Wall clock time and date at job start Wed Apr 1 2020 00:11:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42897 * 113.99789 * 2 1 4 4 H 1.08999 * 110.89079 * 26.11685 * 3 2 1 5 5 C 1.55132 * 111.19183 * 262.18657 * 3 2 1 6 6 N 1.47427 * 104.72055 * 279.19491 * 5 3 2 7 7 C 1.34773 * 125.64984 * 155.81551 * 6 5 3 8 8 O 1.21352 * 120.00273 * 179.69186 * 7 6 5 9 9 C 1.49450 * 120.00206 * 359.68890 * 7 6 5 10 10 O 1.21352 * 119.99486 * 353.31532 * 9 7 6 11 11 N 1.34778 * 120.00439 * 173.31029 * 9 7 6 12 12 C 1.46925 * 120.62470 * 351.43308 * 11 9 7 13 13 C 1.53199 * 108.77433 * 233.62954 * 12 11 9 14 14 C 1.53045 * 109.31349 * 305.36742 * 13 12 11 15 15 C 1.53051 * 109.53454 * 61.36255 * 14 13 12 16 16 H 1.08998 * 109.49241 * 58.62093 * 15 14 13 17 17 C 1.50701 * 109.49237 * 178.68175 * 15 14 13 18 18 H 1.07993 * 120.00463 * 0.02562 * 17 15 14 19 19 C 1.37880 * 119.99517 * 179.72354 * 17 15 14 20 20 N 1.31521 * 120.00051 * 0.28154 * 19 17 15 21 21 Si 1.86796 * 120.00026 * 180.27739 * 19 17 15 22 22 H 1.48497 * 109.47136 * 90.00265 * 21 19 17 23 23 H 1.48500 * 109.47184 * 210.00394 * 21 19 17 24 24 H 1.48499 * 109.47000 * 330.00290 * 21 19 17 25 25 C 1.46919 * 120.63291 * 171.45930 * 11 9 7 26 26 C 1.47027 * 108.70137 * 335.55039 * 6 5 3 27 27 C 1.54320 * 107.27201 * 1.29026 * 26 6 5 28 28 H 1.09005 * 110.71888 * 263.83002 * 27 26 6 29 29 O 1.42901 * 110.72221 * 140.73368 * 27 26 6 30 30 C 1.42901 * 113.99661 * 91.45161 * 29 27 26 31 31 H 1.09005 * 109.47648 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.47667 * 300.00011 * 1 2 3 33 33 H 1.09002 * 109.47347 * 60.00417 * 1 2 3 34 34 H 1.08997 * 110.50085 * 160.35449 * 5 3 2 35 35 H 1.09003 * 110.34044 * 37.95028 * 5 3 2 36 36 H 1.08997 * 109.58496 * 113.84854 * 12 11 9 37 37 H 1.08994 * 109.70858 * 353.48524 * 12 11 9 38 38 H 1.09002 * 109.49615 * 185.41981 * 13 12 11 39 39 H 1.09003 * 109.49887 * 65.31726 * 13 12 11 40 40 H 1.09001 * 109.46328 * 301.34843 * 14 13 12 41 41 H 1.08997 * 109.46198 * 181.38267 * 14 13 12 42 42 H 0.96994 * 119.99955 * 179.97438 * 20 19 17 43 43 H 1.09002 * 109.58359 * 6.57906 * 25 11 9 44 44 H 1.09000 * 109.58582 * 246.15571 * 25 11 9 45 45 H 1.09003 * 109.87938 * 120.70967 * 26 6 5 46 46 H 1.09002 * 109.88245 * 241.86843 * 26 6 5 47 47 H 1.08996 * 109.47338 * 60.00610 * 30 29 27 48 48 H 1.09001 * 109.46531 * 180.02562 * 30 29 27 49 49 H 1.08998 * 109.46998 * 299.99797 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3329 2.0324 0.4483 5 6 2.4179 1.7378 -1.4330 6 7 3.7141 1.0764 -1.6693 7 6 4.2325 0.7724 -2.8756 8 8 5.3156 0.2305 -2.9515 9 6 3.4735 1.1028 -4.1199 10 8 2.3411 1.5325 -4.0437 11 7 4.0465 0.9235 -5.3266 12 6 5.4720 0.5848 -5.4352 13 6 6.1482 1.5919 -6.3710 14 6 5.4046 1.6184 -7.7084 15 6 3.9586 2.0654 -7.4812 16 1 3.9513 3.0528 -7.0198 17 6 3.2363 2.1223 -8.8027 18 1 3.7560 1.8650 -9.7137 19 6 1.9101 2.4968 -8.8478 20 7 1.2770 2.8097 -7.7383 21 14 1.0126 2.5599 -10.4848 22 1 0.3917 1.2394 -10.7601 23 1 -0.0440 3.6020 -10.4302 24 1 1.9766 2.8886 -11.5655 25 6 3.2578 1.0637 -6.5581 26 6 4.3505 0.8091 -0.3711 27 6 3.3823 1.3033 0.7242 28 1 3.6485 2.3092 1.0491 29 8 3.3712 0.4022 1.8333 30 6 4.3159 0.7268 2.8552 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 2.5290 2.8207 -1.4879 35 1 1.6791 1.3940 -2.1571 36 1 5.5786 -0.4207 -5.8422 37 1 5.9371 0.6317 -4.4506 38 1 7.1841 1.2959 -6.5366 39 1 6.1202 2.5836 -5.9195 40 1 5.4115 0.6208 -8.1476 41 1 5.8984 2.3161 -8.3847 42 1 0.3442 3.0735 -7.7701 43 1 2.2601 1.4284 -6.3135 44 1 3.1838 0.0972 -7.0566 45 1 4.5246 -0.2608 -0.2569 46 1 5.2946 1.3497 -0.3028 47 1 4.1007 1.7210 3.2466 48 1 4.2452 -0.0042 3.6607 49 1 5.3227 0.7106 2.4377 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261620380.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:11:23 Heat of formation + Delta-G solvation = -147.827615 kcal Electronic energy + Delta-G solvation = -31445.660551 eV Core-core repulsion = 27180.454911 eV Total energy + Delta-G solvation = -4265.205640 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.12038 -40.67829 -39.41384 -38.56626 -38.15160 -36.96775 -35.21011 -33.49493 -31.82829 -31.60365 -29.81592 -28.00478 -27.40446 -27.27268 -26.76175 -24.98096 -23.63621 -23.08064 -22.09578 -21.21823 -20.17039 -18.72144 -18.56035 -18.33284 -17.73236 -17.35712 -16.96031 -16.83247 -16.54415 -16.35464 -16.08677 -16.00367 -15.58242 -15.38540 -15.17019 -14.84904 -14.66082 -14.50508 -14.27408 -14.16865 -13.93237 -13.73143 -13.50201 -13.45378 -13.04306 -12.87715 -12.75994 -12.59056 -12.41024 -12.29590 -12.15690 -12.09092 -11.95868 -11.72909 -11.54510 -11.13239 -10.98649 -10.80506 -10.66588 -10.54565 -10.09463 -9.85350 -9.54060 -8.11077 -6.27609 0.32033 1.16797 1.42262 1.42659 1.53207 2.09035 2.31150 2.43085 2.66239 2.78832 3.08945 3.17647 3.33280 3.44553 4.00156 4.04538 4.10653 4.15751 4.28161 4.31995 4.40253 4.52091 4.53313 4.56606 4.58327 4.59961 4.62948 4.69319 4.70290 4.73944 4.80319 4.87800 4.89609 4.93887 5.02919 5.05608 5.21789 5.22934 5.29506 5.47878 5.57268 5.84033 5.92538 5.95635 6.09018 6.26440 6.30741 6.35795 6.61983 6.83209 6.96553 7.41908 8.92670 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.016446 B = 0.003009 C = 0.002630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1702.160429 B = 9303.213474 C =10643.201151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.386 6.386 3 C 0.078 3.922 4 H 0.124 0.876 5 C 0.068 3.932 6 N -0.579 5.579 7 C 0.527 3.473 8 O -0.528 6.528 9 C 0.490 3.510 10 O -0.545 6.545 11 N -0.576 5.576 12 C 0.071 3.929 13 C -0.124 4.124 14 C -0.107 4.107 15 C 0.040 3.960 16 H -0.009 1.009 17 C -0.536 4.536 18 H 0.062 0.938 19 C 0.012 3.988 20 N -0.912 5.912 21 Si 0.958 3.042 22 H -0.275 1.275 23 H -0.286 1.286 24 H -0.265 1.265 25 C 0.123 3.877 26 C 0.084 3.916 27 C 0.088 3.912 28 H 0.129 0.871 29 O -0.380 6.380 30 C 0.018 3.982 31 H 0.090 0.910 32 H 0.064 0.936 33 H 0.039 0.961 34 H 0.101 0.899 35 H 0.088 0.912 36 H 0.071 0.929 37 H 0.135 0.865 38 H 0.100 0.900 39 H 0.049 0.951 40 H 0.056 0.944 41 H 0.055 0.945 42 H 0.261 0.739 43 H 0.087 0.913 44 H 0.043 0.957 45 H 0.069 0.931 46 H 0.092 0.908 47 H 0.062 0.938 48 H 0.096 0.904 49 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.923 -1.946 21.547 22.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.304 6.304 3 C 0.019 3.981 4 H 0.142 0.858 5 C -0.055 4.055 6 N -0.312 5.312 7 C 0.311 3.689 8 O -0.407 6.407 9 C 0.273 3.727 10 O -0.424 6.424 11 N -0.308 5.308 12 C -0.050 4.050 13 C -0.162 4.162 14 C -0.145 4.145 15 C 0.021 3.979 16 H 0.010 0.990 17 C -0.574 4.574 18 H 0.080 0.920 19 C -0.187 4.187 20 N -0.550 5.550 21 Si 0.784 3.216 22 H -0.201 1.201 23 H -0.211 1.211 24 H -0.190 1.190 25 C 0.001 3.999 26 C -0.038 4.038 27 C 0.029 3.971 28 H 0.146 0.854 29 O -0.297 6.297 30 C -0.078 4.078 31 H 0.108 0.892 32 H 0.083 0.917 33 H 0.058 0.942 34 H 0.119 0.881 35 H 0.106 0.894 36 H 0.089 0.911 37 H 0.152 0.848 38 H 0.119 0.881 39 H 0.068 0.932 40 H 0.075 0.925 41 H 0.074 0.926 42 H 0.070 0.930 43 H 0.106 0.894 44 H 0.061 0.939 45 H 0.087 0.913 46 H 0.110 0.890 47 H 0.081 0.919 48 H 0.114 0.886 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 4.748 -2.311 21.562 22.199 hybrid contribution -0.863 0.408 -1.268 1.587 sum 3.885 -1.903 20.294 20.750 Atomic orbital electron populations 1.22982 0.79638 1.03656 1.00821 1.87974 1.21172 1.26744 1.94532 1.23659 0.95029 0.86879 0.92504 0.85813 1.23454 0.84933 0.98586 0.98499 1.48048 1.21481 1.57031 1.04631 1.19740 0.85369 0.79871 0.83929 1.90446 1.21369 1.43489 1.85396 1.20288 0.86926 0.80186 0.85320 1.90679 1.20003 1.45164 1.86534 1.48444 1.12120 1.64953 1.05294 1.22880 0.78811 0.98584 1.04712 1.21919 1.00097 0.98789 0.95389 1.21560 0.95623 1.00699 0.96571 1.18890 0.92464 0.92779 0.93757 0.99049 1.21473 0.96327 1.46141 0.93489 0.91996 1.25866 0.98608 0.94538 0.99736 1.70057 1.10978 1.45815 1.28197 0.85552 0.78231 0.77774 0.80087 1.20110 1.21128 1.18950 1.21960 0.97357 0.98373 0.82173 1.22704 0.97492 1.02333 0.81240 1.23400 0.92805 0.94989 0.85881 0.85391 1.88068 1.59768 1.52142 1.29763 1.23102 0.91980 1.02268 0.90476 0.89157 0.91716 0.94202 0.88066 0.89374 0.91096 0.84801 0.88136 0.93169 0.92502 0.92588 0.92958 0.89445 0.93907 0.91306 0.88985 0.91926 0.88589 0.93196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 10.84 113.37 1.23 1.70 16 2 O -0.39 -9.61 10.08 -132.72 -1.34 -10.95 16 3 C 0.08 1.55 3.42 32.06 0.11 1.66 16 4 H 0.12 1.63 7.83 -2.39 -0.02 1.61 16 5 C 0.07 1.76 5.94 86.93 0.52 2.28 16 6 N -0.58 -17.05 3.32 -812.90 -2.70 -19.75 16 7 C 0.53 19.05 7.77 87.27 0.68 19.73 16 8 O -0.53 -19.27 13.51 -3.25 -0.04 -19.32 16 9 C 0.49 21.09 7.69 87.27 0.67 21.76 16 10 O -0.54 -26.00 13.19 -3.25 -0.04 -26.05 16 11 N -0.58 -25.19 2.97 -820.51 -2.44 -27.63 16 12 C 0.07 2.55 5.98 86.36 0.52 3.07 16 13 C -0.12 -4.22 6.08 30.68 0.19 -4.04 16 14 C -0.11 -4.35 5.11 30.63 0.16 -4.20 16 15 C 0.04 2.07 2.25 -11.46 -0.03 2.04 16 16 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 17 C -0.54 -29.52 8.57 25.60 0.22 -29.31 16 18 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 19 C 0.01 0.68 5.30 84.65 0.45 1.13 16 20 N -0.91 -54.14 11.39 21.45 0.24 -53.90 16 21 Si 0.96 43.85 29.54 68.60 2.03 45.88 16 22 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 23 H -0.29 -12.93 7.11 99.48 0.71 -12.23 16 24 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 25 C 0.12 6.23 5.41 86.36 0.47 6.70 16 26 C 0.08 1.89 6.64 86.73 0.58 2.47 16 27 C 0.09 1.48 3.27 31.78 0.10 1.59 16 28 H 0.13 1.24 7.88 -2.38 -0.02 1.22 16 29 O -0.38 -6.95 10.00 -132.72 -1.33 -8.28 16 30 C 0.02 0.18 10.88 113.37 1.23 1.42 16 31 H 0.09 1.58 8.14 -2.38 -0.02 1.56 16 32 H 0.06 0.90 8.12 -2.38 -0.02 0.88 16 33 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 35 H 0.09 2.92 5.98 -2.39 -0.01 2.90 16 36 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 37 H 0.14 4.67 4.32 -47.71 -0.21 4.47 16 38 H 0.10 2.68 8.14 -2.39 -0.02 2.66 16 39 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 40 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 41 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 42 H 0.26 14.87 8.31 -92.71 -0.77 14.10 16 43 H 0.09 5.13 5.12 -2.39 -0.01 5.12 16 44 H 0.04 2.16 8.14 -2.39 -0.02 2.14 16 45 H 0.07 1.79 8.06 -2.39 -0.02 1.77 16 46 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 47 H 0.06 0.42 8.11 -2.39 -0.02 0.40 16 48 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 49 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 Total: -1.00 -72.88 387.77 2.21 -70.67 By element: Atomic # 1 Polarization: 20.60 SS G_CDS: 0.75 Total: 21.35 kcal Atomic # 6 Polarization: 20.90 SS G_CDS: 7.09 Total: 27.99 kcal Atomic # 7 Polarization: -96.38 SS G_CDS: -4.90 Total: -101.28 kcal Atomic # 8 Polarization: -61.85 SS G_CDS: -2.75 Total: -64.60 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Total: -72.88 2.21 -70.67 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261620380.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.160 kcal (2) G-P(sol) polarization free energy of solvation -72.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds