Wall clock time and date at job start Tue Mar 31 2020 23:59:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42904 * 114.00086 * 2 1 4 4 C 1.52997 * 109.47349 * 179.97438 * 3 2 1 5 5 C 1.53003 * 109.47165 * 180.02562 * 4 3 2 6 6 C 1.50699 * 109.46921 * 180.02562 * 5 4 3 7 7 O 1.21281 * 120.00194 * 359.97438 * 6 5 4 8 8 N 1.34781 * 119.99516 * 180.02562 * 6 5 4 9 9 C 1.47663 * 134.45465 * 179.97438 * 8 6 5 10 10 C 1.53504 * 85.98199 * 155.69617 * 9 8 6 11 11 C 1.47667 * 134.46212 * 0.02562 * 8 6 5 12 12 C 1.52775 * 113.51507 * 269.06188 * 10 9 8 13 13 O 1.43385 * 108.24369 * 273.83821 * 12 10 9 14 14 C 1.42825 * 113.34170 * 294.36606 * 13 12 10 15 15 C 1.50280 * 110.49715 * 51.30535 * 14 13 12 16 16 O 1.21282 * 118.96933 * 161.60073 * 15 14 13 17 17 N 1.34274 * 122.05565 * 341.62017 * 15 14 13 18 18 C 1.46503 * 119.37732 * 181.94524 * 17 15 14 19 19 C 1.52998 * 109.47005 * 90.00134 * 18 17 15 20 20 C 1.50697 * 109.47130 * 180.02562 * 19 18 17 21 21 H 1.08003 * 119.99936 * 359.97438 * 20 19 18 22 22 C 1.37872 * 120.00401 * 179.97438 * 20 19 18 23 23 N 1.31518 * 120.00482 * 179.97438 * 22 20 19 24 24 Si 1.86808 * 119.99714 * 359.97438 * 22 20 19 25 25 H 1.48499 * 109.47137 * 89.99966 * 24 22 20 26 26 H 1.48496 * 109.47111 * 210.00061 * 24 22 20 27 27 H 1.48496 * 109.47126 * 330.00044 * 24 22 20 28 28 H 1.09000 * 109.47553 * 299.99879 * 1 2 3 29 29 H 1.08997 * 109.46912 * 60.00323 * 1 2 3 30 30 H 1.09004 * 109.46750 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46978 * 59.99695 * 3 2 1 32 32 H 1.08999 * 109.47049 * 300.00078 * 3 2 1 33 33 H 1.08999 * 109.46969 * 60.00131 * 4 3 2 34 34 H 1.08999 * 109.47469 * 300.00263 * 4 3 2 35 35 H 1.08999 * 109.47140 * 60.00150 * 5 4 3 36 36 H 1.08998 * 109.46636 * 299.99787 * 5 4 3 37 37 H 1.09004 * 113.79402 * 41.43656 * 9 8 6 38 38 H 1.08996 * 113.79359 * 269.96069 * 9 8 6 39 39 H 1.08993 * 113.78437 * 90.03898 * 11 8 6 40 40 H 1.08998 * 113.79058 * 318.57950 * 11 8 6 41 41 H 1.08996 * 109.72519 * 154.14324 * 12 10 9 42 42 H 1.08996 * 109.70006 * 33.51672 * 12 10 9 43 43 H 1.09004 * 109.26498 * 171.56726 * 14 13 12 44 44 H 1.09002 * 109.27186 * 291.03856 * 14 13 12 45 45 H 1.09000 * 109.46616 * 210.00120 * 18 17 15 46 46 H 1.08999 * 109.47298 * 330.00132 * 18 17 15 47 47 H 1.09002 * 109.46916 * 299.99530 * 19 18 17 48 48 H 1.09004 * 109.47246 * 59.99411 * 19 18 17 49 49 H 0.96994 * 120.00015 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.1577 2.5825 0.0013 6 6 5.6600 2.4635 0.0013 7 8 6.1816 1.3685 0.0013 8 7 6.4239 3.5739 0.0023 9 6 7.8784 3.8285 0.0031 10 6 7.5320 5.1850 -0.6264 11 6 6.1418 5.0234 0.0041 12 6 7.5168 5.1620 -2.1539 13 8 8.8527 5.3950 -2.6197 14 6 9.3413 6.7003 -2.3075 15 6 9.1560 6.9958 -0.8457 16 8 9.8001 7.8910 -0.3412 17 7 8.2998 6.2995 -0.0808 18 6 8.1339 6.6653 1.3281 19 6 7.0151 7.7009 1.4577 20 6 6.8448 8.0777 2.9068 21 1 7.4716 7.6236 3.6601 22 6 5.8889 9.0020 3.2711 23 7 5.7399 9.3305 4.5359 24 14 4.8053 9.7880 1.9681 25 1 3.5824 8.9667 1.7800 26 1 4.4213 11.1551 2.4024 27 1 5.5506 9.8668 0.6862 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6885 1.8464 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 3.8574 0.6437 -0.8891 34 1 3.8567 0.6439 0.8908 35 1 3.8357 3.1231 0.8913 36 1 3.8364 3.1235 -0.8887 37 1 8.4408 3.1682 -0.6571 38 1 8.3110 3.9044 1.0007 39 1 6.0588 5.4538 1.0020 40 1 5.3234 5.3129 -0.6552 41 1 6.8558 5.9443 -2.5270 42 1 7.1701 4.1896 -2.5033 43 1 10.4016 6.7559 -2.5542 44 1 8.7964 7.4386 -2.8958 45 1 7.8762 5.7778 1.9059 46 1 9.0651 7.0873 1.7060 47 1 7.2728 8.5884 0.8798 48 1 6.0838 7.2789 1.0796 49 1 5.0672 9.9805 4.7921 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270800370.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:59:25 Heat of formation + Delta-G solvation = -142.996418 kcal Electronic energy + Delta-G solvation = -30796.981524 eV Core-core repulsion = 26531.985380 eV Total energy + Delta-G solvation = -4264.996143 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.62345 -40.78107 -39.39444 -38.77964 -38.41203 -36.39632 -34.88451 -34.61919 -32.49133 -31.24148 -29.49360 -28.73775 -27.72655 -27.51683 -26.21857 -25.82039 -23.41731 -22.73214 -22.38056 -20.11539 -19.66240 -19.20689 -18.86348 -18.17040 -17.64939 -17.47674 -17.28523 -16.98555 -16.67152 -16.36586 -16.32918 -16.08784 -15.81143 -15.53159 -15.42638 -14.96876 -14.86421 -14.72386 -14.35761 -14.11886 -14.10542 -13.70071 -13.60016 -13.03881 -13.02880 -12.94315 -12.84140 -12.66309 -12.58347 -12.44319 -12.17727 -11.96902 -11.93219 -11.89198 -11.74516 -11.59173 -11.42368 -11.01683 -10.76234 -10.59443 -10.50690 -9.90162 -9.74657 -8.29319 -6.35194 1.33860 1.38853 1.41000 1.41700 1.50593 1.51750 1.99914 2.36178 2.60039 2.81266 3.06102 3.14605 3.22348 3.36085 3.51944 3.66671 3.98719 4.09371 4.11369 4.20608 4.21182 4.32870 4.40276 4.44553 4.45471 4.48401 4.49731 4.52181 4.54282 4.58135 4.59399 4.64250 4.66535 4.74024 4.77625 4.79297 4.87805 5.00082 5.11863 5.24962 5.32160 5.43625 5.61051 5.74028 6.23200 6.26205 6.30846 6.56561 6.71835 6.98721 7.04162 7.29623 8.87240 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.008092 B = 0.003596 C = 0.002719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3459.310123 B = 7783.690471 C =10296.427822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.423 6.423 3 C 0.061 3.939 4 C -0.099 4.099 5 C -0.126 4.126 6 C 0.538 3.462 7 O -0.582 6.582 8 N -0.637 5.637 9 C 0.100 3.900 10 C 0.100 3.900 11 C 0.094 3.906 12 C 0.078 3.922 13 O -0.369 6.369 14 C 0.059 3.941 15 C 0.477 3.523 16 O -0.580 6.580 17 N -0.587 5.587 18 C 0.133 3.867 19 C -0.010 4.010 20 C -0.532 4.532 21 H 0.031 0.969 22 C 0.008 3.992 23 N -0.949 5.949 24 Si 0.949 3.051 25 H -0.248 1.248 26 H -0.291 1.291 27 H -0.253 1.253 28 H 0.048 0.952 29 H 0.054 0.946 30 H 0.093 0.907 31 H 0.060 0.940 32 H 0.071 0.929 33 H 0.066 0.934 34 H 0.053 0.947 35 H 0.111 0.889 36 H 0.131 0.869 37 H 0.096 0.904 38 H 0.078 0.922 39 H 0.096 0.904 40 H 0.132 0.868 41 H 0.099 0.901 42 H 0.136 0.864 43 H 0.145 0.855 44 H 0.117 0.883 45 H 0.079 0.921 46 H 0.054 0.946 47 H 0.005 0.995 48 H 0.043 0.957 49 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.251 -12.746 -19.022 24.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.342 6.342 3 C -0.015 4.015 4 C -0.137 4.137 5 C -0.165 4.165 6 C 0.330 3.670 7 O -0.462 6.462 8 N -0.373 5.373 9 C -0.024 4.024 10 C 0.013 3.987 11 C -0.029 4.029 12 C 0.001 3.999 13 O -0.286 6.286 14 C -0.020 4.020 15 C 0.266 3.734 16 O -0.460 6.460 17 N -0.319 5.319 18 C 0.011 3.989 19 C -0.048 4.048 20 C -0.570 4.570 21 H 0.050 0.950 22 C -0.189 4.189 23 N -0.589 5.589 24 Si 0.771 3.229 25 H -0.172 1.172 26 H -0.217 1.217 27 H -0.177 1.177 28 H 0.067 0.933 29 H 0.072 0.928 30 H 0.111 0.889 31 H 0.078 0.922 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.072 0.928 35 H 0.129 0.871 36 H 0.148 0.852 37 H 0.114 0.886 38 H 0.096 0.904 39 H 0.114 0.886 40 H 0.150 0.850 41 H 0.117 0.883 42 H 0.154 0.846 43 H 0.163 0.837 44 H 0.134 0.866 45 H 0.097 0.903 46 H 0.072 0.928 47 H 0.023 0.977 48 H 0.061 0.939 49 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.638 -13.259 -18.755 24.205 hybrid contribution -0.328 0.997 1.048 1.483 sum -7.966 -12.263 -17.706 22.964 Atomic orbital electron populations 1.22916 0.79425 1.03702 1.00992 1.87838 1.21554 1.29185 1.95667 1.22596 0.92752 0.84420 1.01760 1.21139 0.93510 0.95964 1.03112 1.21540 0.88526 0.99255 1.07170 1.20858 0.90257 0.81641 0.74207 1.90713 1.76051 1.27281 1.52135 1.49850 1.08019 1.06211 1.73224 1.23552 0.83220 0.94248 1.01394 1.22982 0.92748 0.85487 0.97479 1.23967 0.97470 0.78120 1.03307 1.22938 0.84717 1.05846 0.86417 1.88183 1.30705 1.31690 1.78031 1.22864 1.04597 0.86689 0.87896 1.22007 0.78517 0.81304 0.91561 1.90758 1.47644 1.32969 1.74654 1.47754 1.41288 1.31665 1.11152 1.21290 0.99348 0.98449 0.79836 1.19794 0.95244 0.94855 0.94904 1.21246 1.18610 1.24360 0.92786 0.95042 1.25981 0.98797 0.96632 0.97504 1.70069 1.35820 1.34508 1.18552 0.85688 0.79580 0.77917 0.79670 1.17175 1.21730 1.17677 0.93308 0.92756 0.88887 0.92200 0.91060 0.91554 0.92792 0.87098 0.85152 0.88566 0.90399 0.88601 0.85027 0.88287 0.84625 0.83744 0.86568 0.90254 0.92780 0.97651 0.93882 0.92457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 113.37 1.25 1.56 16 2 O -0.42 -8.24 10.70 -148.98 -1.59 -9.83 16 3 C 0.06 0.92 5.94 71.98 0.43 1.35 16 4 C -0.10 -1.83 4.87 30.59 0.15 -1.68 16 5 C -0.13 -1.91 5.45 29.85 0.16 -1.74 16 6 C 0.54 12.47 8.06 87.66 0.71 13.18 16 7 O -0.58 -18.60 16.71 -3.03 -0.05 -18.65 16 8 N -0.64 -13.43 3.49 -843.18 -2.94 -16.37 16 9 C 0.10 2.26 7.86 86.32 0.68 2.94 16 10 C 0.10 2.07 1.50 5.39 0.01 2.08 16 11 C 0.09 1.80 6.80 86.32 0.59 2.38 16 12 C 0.08 1.12 5.99 71.91 0.43 1.56 16 13 O -0.37 -6.58 10.84 -148.98 -1.61 -8.19 16 14 C 0.06 1.11 6.94 71.10 0.49 1.61 16 15 C 0.48 14.32 7.64 87.60 0.67 14.99 16 16 O -0.58 -23.36 16.45 -3.04 -0.05 -23.41 16 17 N -0.59 -16.99 2.66 -787.11 -2.09 -19.08 16 18 C 0.13 4.94 4.43 86.38 0.38 5.33 16 19 C -0.01 -0.42 4.00 29.85 0.12 -0.30 16 20 C -0.53 -29.18 9.66 25.60 0.25 -28.93 16 21 H 0.03 1.93 7.99 -2.91 -0.02 1.90 16 22 C 0.01 0.45 5.47 84.65 0.46 0.92 16 23 N -0.95 -57.83 13.96 21.45 0.30 -57.53 16 24 Si 0.95 41.28 27.47 68.60 1.88 43.17 16 25 H -0.25 -9.62 7.11 99.48 0.71 -8.91 16 26 H -0.29 -12.86 7.11 99.48 0.71 -12.16 16 27 H -0.25 -10.40 6.54 99.48 0.65 -9.75 16 28 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.09 0.95 8.14 -2.38 -0.02 0.93 16 31 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.07 1.38 8.10 -2.39 -0.02 1.36 16 34 H 0.05 1.25 8.10 -2.39 -0.02 1.23 16 35 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.13 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.10 2.10 8.09 -2.38 -0.02 2.08 16 38 H 0.08 2.00 7.22 -2.39 -0.02 1.99 16 39 H 0.10 2.39 5.01 -2.39 -0.01 2.37 16 40 H 0.13 1.51 8.09 -2.39 -0.02 1.49 16 41 H 0.10 1.00 8.13 -2.39 -0.02 0.98 16 42 H 0.14 1.55 7.97 -2.39 -0.02 1.53 16 43 H 0.15 2.36 8.14 -2.38 -0.02 2.34 16 44 H 0.12 1.65 8.14 -2.39 -0.02 1.63 16 45 H 0.08 2.79 6.31 -2.39 -0.02 2.77 16 46 H 0.05 2.36 7.30 -2.39 -0.02 2.34 16 47 H 0.01 0.24 7.20 -2.39 -0.02 0.22 16 48 H 0.04 1.61 5.45 -2.38 -0.01 1.59 16 49 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 Total: -1.00 -80.78 395.18 1.51 -79.28 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: 0.89 Total: 15.38 kcal Atomic # 6 Polarization: 8.47 SS G_CDS: 6.77 Total: 15.24 kcal Atomic # 7 Polarization: -88.25 SS G_CDS: -4.73 Total: -92.98 kcal Atomic # 8 Polarization: -56.78 SS G_CDS: -3.31 Total: -60.09 kcal Atomic # 14 Polarization: 41.28 SS G_CDS: 1.88 Total: 43.17 kcal Total: -80.78 1.51 -79.28 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270800370.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.718 kcal (2) G-P(sol) polarization free energy of solvation -80.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds