Wall clock time and date at job start Tue Mar 31 2020 23:30:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45200 * 109.47261 * 2 1 4 4 C 1.34226 * 117.00405 * 179.97438 * 3 2 1 5 5 O 1.20837 * 119.99773 * 0.02562 * 4 3 2 6 6 C 1.50695 * 120.00404 * 180.02562 * 4 3 2 7 7 N 1.46900 * 109.47433 * 180.02562 * 6 4 3 8 8 C 1.48611 * 110.99708 * 69.87540 * 7 6 4 9 9 C 1.54496 * 104.71649 * 158.83314 * 8 7 6 10 10 C 1.53779 * 104.88598 * 336.18009 * 9 8 7 11 11 C 1.48967 * 111.13604 * 185.28123 * 7 6 4 12 12 C 1.52412 * 110.32798 * 240.98733 * 10 9 8 13 13 N 1.46204 * 109.94929 * 285.73608 * 12 10 9 14 14 C 1.46507 * 118.77493 * 162.45527 * 13 12 10 15 15 C 1.52995 * 109.47229 * 270.02432 * 14 13 12 16 16 C 1.50698 * 109.47008 * 180.02562 * 15 14 13 17 17 H 1.07998 * 120.00308 * 0.02562 * 16 15 14 18 18 C 1.37881 * 119.99929 * 179.97438 * 16 15 14 19 19 N 1.31517 * 120.00031 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99895 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.47038 * 60.00444 * 20 18 16 22 22 H 1.48503 * 109.47181 * 179.97438 * 20 18 16 23 23 H 1.48492 * 109.47474 * 300.00247 * 20 18 16 24 24 C 1.33843 * 122.45026 * 342.48465 * 13 12 10 25 25 O 1.21278 * 118.69525 * 182.42088 * 24 13 12 26 26 C 1.50303 * 122.60649 * 2.39607 * 24 13 12 27 27 O 1.42573 * 110.25992 * 119.12200 * 10 9 8 28 28 H 1.08995 * 109.46879 * 59.99775 * 1 2 3 29 29 H 1.08993 * 109.46913 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46712 * 300.00101 * 1 2 3 31 31 H 1.09003 * 109.47278 * 240.00402 * 2 1 3 32 32 H 1.09002 * 109.47479 * 120.00388 * 2 1 3 33 33 H 1.08998 * 109.47112 * 60.00427 * 6 4 3 34 34 H 1.09004 * 109.47313 * 300.00326 * 6 4 3 35 35 H 1.09002 * 110.40912 * 39.99026 * 8 7 6 36 36 H 1.09002 * 110.40761 * 277.67411 * 8 7 6 37 37 H 1.09004 * 110.36227 * 95.03069 * 9 8 7 38 38 H 1.08994 * 110.35915 * 217.32785 * 9 8 7 39 39 H 1.09000 * 110.41002 * 82.64589 * 11 7 6 40 40 H 1.09000 * 110.41229 * 320.18130 * 11 7 6 41 41 H 1.09004 * 109.39260 * 45.88329 * 12 10 9 42 42 H 1.08999 * 109.39610 * 165.59091 * 12 10 9 43 43 H 1.08999 * 109.46978 * 30.02469 * 14 13 12 44 44 H 1.08997 * 109.46409 * 150.02505 * 14 13 12 45 45 H 1.09005 * 109.47459 * 300.00238 * 15 14 13 46 46 H 1.08997 * 109.47502 * 59.99884 * 15 14 13 47 47 H 0.96998 * 119.99854 * 180.02562 * 19 18 16 48 48 H 1.09008 * 109.39874 * 223.42115 * 26 24 13 49 49 H 1.08998 * 109.32982 * 103.64322 * 26 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5449 0.0005 5 8 4.0809 0.5866 0.0005 6 6 3.9208 2.9374 0.0012 7 7 5.3878 2.8606 0.0010 8 6 5.8945 2.3566 -1.3019 9 6 7.3630 2.8328 -1.3627 10 6 7.4226 4.0502 -0.4250 11 6 5.9965 4.2141 0.1295 12 6 7.8344 5.2961 -1.2003 13 7 9.2623 5.2418 -1.5097 14 6 9.7900 6.1158 -2.5604 15 6 9.7216 5.3930 -3.9071 16 6 10.2650 6.2918 -4.9878 17 1 10.6236 7.2797 -4.7389 18 6 10.3052 5.8527 -6.2942 19 7 9.8689 4.6496 -6.5972 20 14 10.9781 6.9671 -7.6338 21 1 12.3897 7.3124 -7.3278 22 1 10.9130 6.2651 -8.9408 23 1 10.1673 8.2095 -7.6978 24 6 10.1053 4.4230 -0.8691 25 8 11.2844 4.4654 -1.1498 26 6 9.6487 3.4534 0.1847 27 8 8.3401 3.8091 0.6394 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 3.5846 3.4692 0.8912 34 1 3.5851 3.4699 -0.8888 35 1 5.3216 2.7854 -2.1241 36 1 5.8463 1.2681 -1.3332 37 1 8.0312 2.0480 -1.0080 38 1 7.6253 3.1243 -2.3796 39 1 6.0277 4.5191 1.1755 40 1 5.4389 4.9395 -0.4628 41 1 7.2649 5.3496 -2.1282 42 1 7.6278 6.1814 -0.5990 43 1 9.1951 7.0280 -2.6070 44 1 10.8262 6.3688 -2.3360 45 1 10.3165 4.4808 -3.8606 46 1 8.6855 5.1399 -4.1315 47 1 9.8976 4.3405 -7.5162 48 1 10.3430 3.4781 1.0247 49 1 9.6250 2.4481 -0.2360 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272890078.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:30:01 Heat of formation + Delta-G solvation = -145.093744 kcal Electronic energy + Delta-G solvation = -30640.180818 eV Core-core repulsion = 26375.093728 eV Total energy + Delta-G solvation = -4265.087090 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.15245 -40.60133 -38.81693 -37.20459 -36.39050 -35.44562 -33.14185 -32.49704 -31.82441 -30.16196 -29.85982 -27.82317 -27.26338 -25.23590 -24.52372 -23.57036 -22.06546 -21.79643 -20.97286 -20.47956 -18.24767 -17.95286 -17.71443 -17.00839 -16.78033 -16.62760 -16.19731 -15.89820 -15.53100 -15.20113 -14.99723 -14.57010 -14.30687 -14.20170 -14.05143 -13.67819 -13.47068 -13.19344 -13.02988 -12.91881 -12.72919 -12.53476 -12.35552 -12.29852 -12.04247 -11.92762 -11.85479 -11.47468 -11.40660 -11.18079 -11.01747 -10.90674 -10.85531 -10.75805 -10.59696 -10.17402 -9.93871 -9.90028 -9.33603 -8.96334 -8.85376 -8.39272 -8.13080 -6.04814 -4.07914 1.97367 2.20029 2.90614 3.21830 3.31250 3.35765 3.38810 3.55249 3.62097 4.27247 4.32021 4.42520 4.48110 4.53578 4.54308 4.61158 4.74401 4.85007 4.86727 4.88878 4.99607 5.18601 5.26525 5.27660 5.30240 5.31477 5.37067 5.38011 5.52094 5.55887 5.56798 5.58280 5.74216 5.86919 6.02162 6.05867 6.14369 6.39085 6.48665 6.49843 6.71612 6.81346 6.95486 7.53712 7.54361 7.66297 7.89571 7.94439 8.31321 8.51407 8.98098 9.56090 11.06593 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.012788 B = 0.002555 C = 0.002245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2189.034949 B =10958.222571 C =12468.009016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.063 3.937 3 O -0.363 6.363 4 C 0.462 3.538 5 O -0.487 6.487 6 C 0.051 3.949 7 N -0.493 5.493 8 C 0.033 3.967 9 C -0.154 4.154 10 C 0.102 3.898 11 C 0.053 3.947 12 C 0.097 3.903 13 N -0.597 5.597 14 C 0.111 3.889 15 C 0.016 3.984 16 C -0.521 4.521 17 H 0.056 0.944 18 C 0.059 3.941 19 N -0.894 5.894 20 Si 0.895 3.105 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.276 1.276 24 C 0.482 3.518 25 O -0.540 6.540 26 C 0.048 3.952 27 O -0.354 6.354 28 H 0.067 0.933 29 H 0.079 0.921 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.120 0.880 34 H 0.082 0.918 35 H 0.049 0.951 36 H 0.097 0.903 37 H 0.086 0.914 38 H 0.091 0.909 39 H 0.103 0.897 40 H 0.070 0.930 41 H 0.089 0.911 42 H 0.072 0.928 43 H 0.064 0.936 44 H 0.077 0.923 45 H 0.021 0.979 46 H 0.014 0.986 47 H 0.262 0.738 48 H 0.127 0.873 49 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.199 -5.339 16.096 25.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.011 4.011 3 O -0.281 6.281 4 C 0.303 3.697 5 O -0.372 6.372 6 C -0.078 4.078 7 N -0.218 5.218 8 C -0.094 4.094 9 C -0.192 4.192 10 C 0.061 3.939 11 C -0.074 4.074 12 C -0.027 4.027 13 N -0.330 5.330 14 C -0.009 4.009 15 C -0.022 4.022 16 C -0.560 4.560 17 H 0.075 0.925 18 C -0.143 4.143 19 N -0.533 5.533 20 Si 0.723 3.277 21 H -0.201 1.201 22 H -0.213 1.213 23 H -0.202 1.202 24 C 0.268 3.732 25 O -0.418 6.418 26 C -0.031 4.031 27 O -0.272 6.272 28 H 0.086 0.914 29 H 0.098 0.902 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.138 0.862 34 H 0.100 0.900 35 H 0.068 0.932 36 H 0.115 0.885 37 H 0.104 0.896 38 H 0.110 0.890 39 H 0.122 0.878 40 H 0.088 0.912 41 H 0.107 0.893 42 H 0.090 0.910 43 H 0.082 0.918 44 H 0.096 0.904 45 H 0.039 0.961 46 H 0.032 0.968 47 H 0.071 0.929 48 H 0.145 0.855 49 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -18.334 -6.107 16.447 25.376 hybrid contribution 0.096 0.802 -1.823 1.994 sum -18.238 -5.305 14.624 23.971 Atomic orbital electron populations 1.21810 0.92576 1.03032 1.03546 1.23021 0.95315 0.80021 1.02718 1.86472 1.24547 1.32637 1.84393 1.23466 0.80522 0.92635 0.73073 1.90689 1.60139 1.42743 1.43611 1.21758 0.89883 0.91084 1.05072 1.65334 1.03499 1.20222 1.32764 1.23263 0.94673 1.02439 0.89044 1.23031 0.97290 0.97800 1.01059 1.22027 0.90101 0.94063 0.87674 1.23009 0.91276 0.89861 1.03266 1.21986 0.82909 0.97510 1.00275 1.47682 1.07272 1.40575 1.37471 1.21956 0.99343 0.91973 0.87639 1.19339 0.97140 0.96404 0.89274 1.21043 1.41856 1.00949 0.92155 0.92537 1.24998 0.95343 0.95142 0.98784 1.69955 1.46771 1.17406 1.19121 0.86610 0.79694 0.80572 0.80850 1.20121 1.21271 1.20201 1.20759 0.86695 0.82334 0.83370 1.90747 1.16557 1.68448 1.66007 1.22844 0.84777 0.97588 0.97899 1.88070 1.19198 1.89493 1.30452 0.91434 0.90198 0.91454 0.91187 0.91159 0.86250 0.90010 0.93223 0.88515 0.89563 0.89044 0.87848 0.91237 0.89259 0.90970 0.91777 0.90447 0.96092 0.96794 0.92886 0.85499 0.89331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.74 10.29 37.16 0.38 -0.35 16 2 C 0.06 0.47 6.19 37.16 0.23 0.69 16 3 O -0.36 -3.30 10.22 -39.25 -0.40 -3.70 16 4 C 0.46 4.76 7.76 36.00 0.28 5.04 16 5 O -0.49 -6.57 14.60 -18.76 -0.27 -6.85 16 6 C 0.05 0.41 5.42 -4.98 -0.03 0.38 16 7 N -0.49 -5.18 5.07 -231.25 -1.17 -6.35 16 8 C 0.03 0.39 5.80 -2.09 -0.01 0.37 16 9 C -0.15 -2.01 5.65 -25.54 -0.14 -2.15 16 10 C 0.10 1.25 1.03 -90.06 -0.09 1.15 16 11 C 0.05 0.50 5.77 -2.22 -0.01 0.49 16 12 C 0.10 1.31 5.01 -4.50 -0.02 1.29 16 13 N -0.60 -10.66 2.80 -174.72 -0.49 -11.15 16 14 C 0.11 2.35 5.26 -4.04 -0.02 2.33 16 15 C 0.02 0.42 5.29 -27.89 -0.15 0.27 16 16 C -0.52 -14.70 9.11 -34.44 -0.31 -15.01 16 17 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 18 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 19 N -0.89 -26.80 13.29 55.43 0.74 -26.07 16 20 Si 0.90 21.66 29.54 -169.99 -5.02 16.64 16 21 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 22 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 24 C 0.48 8.94 7.42 -11.59 -0.09 8.85 16 25 O -0.54 -12.31 16.34 5.56 0.09 -12.22 16 26 C 0.05 0.68 6.42 35.81 0.23 0.91 16 27 O -0.35 -4.77 10.35 -35.23 -0.36 -5.14 16 28 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.07 0.53 8.13 -51.93 -0.42 0.11 16 32 H 0.07 0.52 8.13 -51.93 -0.42 0.10 16 33 H 0.12 0.69 8.13 -51.93 -0.42 0.26 16 34 H 0.08 0.52 7.88 -51.93 -0.41 0.11 16 35 H 0.05 0.53 7.82 -51.93 -0.41 0.12 16 36 H 0.10 1.25 6.92 -51.93 -0.36 0.89 16 37 H 0.09 1.16 6.17 -51.93 -0.32 0.84 16 38 H 0.09 1.36 7.63 -51.93 -0.40 0.97 16 39 H 0.10 0.90 8.07 -51.93 -0.42 0.48 16 40 H 0.07 0.50 7.71 -51.93 -0.40 0.10 16 41 H 0.09 1.19 7.97 -51.93 -0.41 0.78 16 42 H 0.07 0.84 8.12 -51.93 -0.42 0.41 16 43 H 0.06 1.22 8.04 -51.93 -0.42 0.80 16 44 H 0.08 1.77 7.22 -51.93 -0.38 1.40 16 45 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 47 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 48 H 0.13 1.56 8.14 -51.92 -0.42 1.14 16 49 H 0.09 1.18 6.50 -51.93 -0.34 0.84 16 LS Contribution 394.78 15.07 5.95 5.95 Total: -1.00 -35.64 394.78 -8.82 -44.47 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: -8.02 Total: -1.45 kcal Atomic # 6 Polarization: 5.72 SS G_CDS: 0.14 Total: 5.86 kcal Atomic # 7 Polarization: -42.64 SS G_CDS: -0.93 Total: -43.57 kcal Atomic # 8 Polarization: -26.96 SS G_CDS: -0.95 Total: -27.90 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -35.64 -8.82 -44.47 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272890078.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.628 kcal (2) G-P(sol) polarization free energy of solvation -35.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds