Wall clock time and date at job start Tue Mar 31 2020 23:18:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.45202 * 109.46919 * 2 1 4 4 C 1.34230 * 116.99836 * 180.02562 * 3 2 1 5 5 O 1.20833 * 119.99930 * 359.97438 * 4 3 2 6 6 C 1.50697 * 120.00262 * 180.27336 * 4 3 2 7 7 C 1.52996 * 109.47491 * 179.72204 * 6 4 3 8 8 N 1.46896 * 109.47256 * 180.02562 * 7 6 4 9 9 C 1.47599 * 110.99785 * 266.10420 * 8 7 6 10 10 C 1.52873 * 87.79138 * 221.75540 * 9 8 7 11 11 C 1.47588 * 111.00262 * 170.00082 * 8 7 6 12 12 C 1.52449 * 114.29866 * 139.67027 * 10 9 8 13 13 N 1.46295 * 109.56761 * 177.66930 * 12 10 9 14 14 C 1.46497 * 118.72713 * 164.05263 * 13 12 10 15 15 C 1.53003 * 109.47324 * 270.04555 * 14 13 12 16 16 C 1.50700 * 109.47224 * 179.97438 * 15 14 13 17 17 H 1.08001 * 119.99708 * 359.97438 * 16 15 14 18 18 C 1.37878 * 119.99839 * 179.97438 * 16 15 14 19 19 N 1.31518 * 119.99295 * 180.02562 * 18 16 15 20 20 Si 1.86797 * 120.00232 * 359.97438 * 18 16 15 21 21 H 1.48500 * 109.46864 * 90.00024 * 20 18 16 22 22 H 1.48493 * 109.47048 * 209.99961 * 20 18 16 23 23 H 1.48504 * 109.47107 * 330.00184 * 20 18 16 24 24 C 1.33716 * 122.54564 * 344.10266 * 13 12 10 25 25 O 1.21281 * 118.35748 * 183.27854 * 24 13 12 26 26 C 1.50156 * 123.28056 * 3.25177 * 24 13 12 27 27 O 1.42563 * 114.29235 * 271.62443 * 10 9 8 28 28 H 1.08999 * 109.47371 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47687 * 300.00275 * 1 2 3 30 30 H 1.09002 * 109.47633 * 60.00402 * 1 2 3 31 31 H 1.08998 * 109.47242 * 239.99429 * 2 1 3 32 32 H 1.09004 * 109.46797 * 119.99245 * 2 1 3 33 33 H 1.09004 * 109.46801 * 299.72165 * 6 4 3 34 34 H 1.09000 * 109.47461 * 59.71633 * 6 4 3 35 35 H 1.09004 * 109.47066 * 299.99799 * 7 6 4 36 36 H 1.08994 * 109.47405 * 59.99969 * 7 6 4 37 37 H 1.08996 * 113.49864 * 336.49222 * 9 8 7 38 38 H 1.09005 * 113.49659 * 107.02631 * 9 8 7 39 39 H 1.09004 * 113.49946 * 252.96849 * 11 8 7 40 40 H 1.09004 * 113.50116 * 23.50478 * 11 8 7 41 41 H 1.09001 * 109.46057 * 297.71447 * 12 10 9 42 42 H 1.08997 * 109.45561 * 57.65971 * 12 10 9 43 43 H 1.08998 * 109.47090 * 30.04005 * 14 13 12 44 44 H 1.08998 * 109.47186 * 150.04222 * 14 13 12 45 45 H 1.08996 * 109.47080 * 299.99582 * 15 14 13 46 46 H 1.08998 * 109.47261 * 59.99712 * 15 14 13 47 47 H 0.97000 * 119.99105 * 180.02562 * 19 18 16 48 48 H 1.08998 * 109.35113 * 222.07846 * 26 24 13 49 49 H 1.09001 * 109.22932 * 102.46156 * 26 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3446 1.5449 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9207 2.9374 0.0057 7 6 5.4485 2.8573 0.0107 8 7 6.0100 4.2147 0.0173 9 6 6.3034 4.6725 -1.3549 10 6 7.6089 5.2583 -0.8169 11 6 7.4652 4.1841 0.2615 12 6 8.8091 5.0657 -1.7370 13 7 9.9843 5.7102 -1.1509 14 6 11.3099 5.3615 -1.6679 15 6 11.8699 4.1766 -0.8784 16 6 13.2333 3.8175 -1.4107 17 1 13.6577 4.3781 -2.2304 18 6 13.9387 2.7734 -0.8512 19 7 15.1288 2.4604 -1.3155 20 14 13.2049 1.8042 0.5671 21 1 12.4212 0.6616 0.0328 22 1 14.2964 1.2932 1.4346 23 1 12.3136 2.6874 1.3614 24 6 9.8955 6.6045 -0.1607 25 8 10.9136 7.1369 0.2277 26 6 8.5982 6.9830 0.4937 27 8 7.4963 6.5940 -0.3316 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8932 -0.5137 0.8901 33 1 3.5878 3.4722 -0.8839 34 1 3.5816 3.4669 0.8960 35 1 5.7814 2.3225 0.9002 36 1 5.7876 2.3279 -0.8797 37 1 6.4520 3.8569 -2.0626 38 1 5.6063 5.4268 -1.7198 39 1 7.7462 4.5273 1.2572 40 1 7.9308 3.2353 -0.0053 41 1 9.0035 4.0004 -1.8621 42 1 8.5972 5.5122 -2.7085 43 1 11.2297 5.0911 -2.7207 44 1 11.9776 6.2166 -1.5623 45 1 11.9502 4.4469 0.1745 46 1 11.2023 3.3215 -0.9840 47 1 15.6249 1.7256 -0.9221 48 1 8.5719 8.0619 0.6463 49 1 8.5224 6.4802 1.4579 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273470291.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:18:37 Heat of formation + Delta-G solvation = -117.419778 kcal Electronic energy + Delta-G solvation = -30052.401977 eV Core-core repulsion = 25788.514920 eV Total energy + Delta-G solvation = -4263.887057 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.62010 -40.81781 -39.46242 -37.26709 -36.77706 -35.60822 -33.35545 -32.97477 -32.06997 -30.68151 -29.41864 -27.69785 -26.35541 -26.19324 -24.65521 -23.83440 -22.57386 -21.33916 -20.90858 -20.22335 -18.55749 -18.13680 -17.53587 -17.24136 -17.08382 -16.84428 -16.27443 -16.08090 -15.95272 -15.30848 -15.20281 -14.66108 -14.48769 -14.26400 -14.17323 -13.74671 -13.61407 -13.32337 -13.26439 -13.06007 -12.95947 -12.79695 -12.65474 -12.55909 -12.29190 -12.06807 -11.90670 -11.67782 -11.58624 -11.31102 -11.06400 -10.97175 -10.91202 -10.81228 -10.57116 -10.21253 -10.07635 -9.87824 -9.42234 -9.31467 -9.09274 -8.58340 -8.31211 -6.08794 -4.07619 1.82460 2.19156 2.74793 3.04762 3.24280 3.26210 3.35205 3.39172 3.59427 4.04819 4.14836 4.27801 4.41234 4.41814 4.45586 4.50771 4.59670 4.60398 4.79417 4.85990 4.92416 5.05970 5.08845 5.14540 5.16844 5.24925 5.25689 5.28967 5.34776 5.39050 5.42008 5.43394 5.48450 5.50185 5.58378 5.87290 5.93531 6.05424 6.30221 6.49133 6.55334 6.59840 6.74628 7.15015 7.30028 7.35643 7.67362 7.74630 8.34909 8.46551 8.94593 9.52907 11.04347 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.011340 B = 0.002555 C = 0.002182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2468.574864 B =10956.799544 C =12828.241719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.061 3.939 3 O -0.360 6.360 4 C 0.462 3.538 5 O -0.508 6.508 6 C -0.103 4.103 7 C 0.026 3.974 8 N -0.461 5.461 9 C 0.018 3.982 10 C 0.071 3.929 11 C -0.022 4.022 12 C 0.102 3.898 13 N -0.600 5.600 14 C 0.120 3.880 15 C -0.020 4.020 16 C -0.520 4.520 17 H 0.074 0.926 18 C 0.069 3.931 19 N -0.900 5.900 20 Si 0.879 3.121 21 H -0.277 1.277 22 H -0.286 1.286 23 H -0.267 1.267 24 C 0.480 3.520 25 O -0.538 6.538 26 C 0.051 3.949 27 O -0.333 6.333 28 H 0.080 0.920 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.107 0.893 34 H 0.115 0.885 35 H 0.085 0.915 36 H 0.060 0.940 37 H 0.091 0.909 38 H 0.103 0.897 39 H 0.095 0.905 40 H 0.088 0.912 41 H 0.090 0.910 42 H 0.079 0.921 43 H 0.071 0.929 44 H 0.084 0.916 45 H 0.020 0.980 46 H 0.009 0.991 47 H 0.264 0.736 48 H 0.130 0.870 49 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.858 0.181 1.188 30.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.013 4.013 3 O -0.277 6.277 4 C 0.305 3.695 5 O -0.396 6.396 6 C -0.141 4.141 7 C -0.103 4.103 8 N -0.182 5.182 9 C -0.111 4.111 10 C 0.030 3.970 11 C -0.150 4.150 12 C -0.023 4.023 13 N -0.333 5.333 14 C -0.001 4.001 15 C -0.059 4.059 16 C -0.558 4.558 17 H 0.092 0.908 18 C -0.132 4.132 19 N -0.538 5.538 20 Si 0.707 3.293 21 H -0.203 1.203 22 H -0.212 1.212 23 H -0.191 1.191 24 C 0.267 3.733 25 O -0.416 6.416 26 C -0.028 4.028 27 O -0.251 6.251 28 H 0.098 0.902 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.125 0.875 34 H 0.133 0.867 35 H 0.104 0.896 36 H 0.079 0.921 37 H 0.109 0.891 38 H 0.121 0.879 39 H 0.113 0.887 40 H 0.107 0.893 41 H 0.108 0.892 42 H 0.097 0.903 43 H 0.089 0.911 44 H 0.102 0.898 45 H 0.039 0.961 46 H 0.027 0.973 47 H 0.074 0.926 48 H 0.148 0.852 49 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -30.611 0.498 1.822 30.669 hybrid contribution 0.416 -1.677 0.327 1.758 sum -30.195 -1.179 2.149 30.295 Atomic orbital electron populations 1.21811 0.92499 1.03082 1.03599 1.23048 0.95454 0.80067 1.02731 1.86506 1.24584 1.32570 1.84013 1.23788 0.80595 0.92882 0.72228 1.90706 1.60366 1.43362 1.45171 1.21202 0.95761 0.90442 1.06730 1.22523 0.93006 0.91150 1.03585 1.68890 1.12734 1.20107 1.16516 1.23971 0.94841 0.99958 0.92305 1.22380 0.95492 0.84193 0.94961 1.24449 0.89461 0.99454 1.01673 1.21901 0.83886 0.99712 0.96759 1.47720 1.08443 1.41230 1.35891 1.21749 0.80685 1.00107 0.97540 1.19834 0.96722 0.92734 0.96560 1.20947 0.99840 1.16122 1.18907 0.90782 1.24980 0.94661 0.96933 0.96657 1.69908 1.12186 1.29601 1.42149 0.86784 0.79138 0.80349 0.83063 1.20319 1.21223 1.19127 1.20714 0.91907 0.79868 0.80850 1.90766 1.36198 1.52765 1.61827 1.22813 0.82525 1.03210 0.94271 1.88059 1.43094 1.26675 1.67302 0.90159 0.91412 0.91405 0.91145 0.91158 0.87453 0.86717 0.89612 0.92147 0.89076 0.87860 0.88670 0.89348 0.89160 0.90318 0.91066 0.89757 0.96132 0.97282 0.92641 0.85196 0.89446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.65 10.29 37.15 0.38 -0.27 16 2 C 0.06 0.41 6.19 37.15 0.23 0.64 16 3 O -0.36 -3.02 10.22 -39.26 -0.40 -3.42 16 4 C 0.46 4.24 7.96 36.00 0.29 4.53 16 5 O -0.51 -6.24 15.73 -18.76 -0.30 -6.53 16 6 C -0.10 -0.72 6.14 -27.89 -0.17 -0.89 16 7 C 0.03 0.22 4.11 -3.83 -0.02 0.21 16 8 N -0.46 -4.24 6.33 -244.69 -1.55 -5.79 16 9 C 0.02 0.15 7.15 -7.28 -0.05 0.10 16 10 C 0.07 0.77 1.22 -91.02 -0.11 0.66 16 11 C -0.02 -0.23 6.86 -7.28 -0.05 -0.28 16 12 C 0.10 1.24 5.90 -4.44 -0.03 1.22 16 13 N -0.60 -9.98 2.84 -174.73 -0.50 -10.48 16 14 C 0.12 2.41 5.26 -4.04 -0.02 2.38 16 15 C -0.02 -0.49 4.36 -27.88 -0.12 -0.61 16 16 C -0.52 -14.81 9.66 -34.44 -0.33 -15.15 16 17 H 0.07 2.25 7.99 -52.49 -0.42 1.83 16 18 C 0.07 2.03 5.47 -17.82 -0.10 1.94 16 19 N -0.90 -27.80 13.96 55.43 0.77 -27.03 16 20 Si 0.88 21.98 27.47 -169.99 -4.67 17.31 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 23 H -0.27 -6.53 6.54 56.52 0.37 -6.16 16 24 C 0.48 8.25 7.58 -11.72 -0.09 8.16 16 25 O -0.54 -11.57 16.28 5.56 0.09 -11.48 16 26 C 0.05 0.64 6.69 35.74 0.24 0.88 16 27 O -0.33 -4.03 10.68 -35.23 -0.38 -4.40 16 28 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.07 0.47 8.13 -51.93 -0.42 0.05 16 32 H 0.07 0.48 8.13 -51.93 -0.42 0.06 16 33 H 0.11 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.11 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.09 0.82 8.04 -51.93 -0.42 0.40 16 36 H 0.06 0.52 7.26 -51.93 -0.38 0.15 16 37 H 0.09 0.60 7.38 -51.93 -0.38 0.22 16 38 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 39 H 0.09 1.07 7.10 -51.93 -0.37 0.70 16 40 H 0.09 0.94 7.67 -51.93 -0.40 0.55 16 41 H 0.09 1.06 7.86 -51.93 -0.41 0.65 16 42 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 43 H 0.07 1.31 8.04 -51.93 -0.42 0.89 16 44 H 0.08 1.87 7.19 -51.93 -0.37 1.50 16 45 H 0.02 0.53 7.20 -51.93 -0.37 0.16 16 46 H 0.01 0.21 7.57 -51.93 -0.39 -0.19 16 47 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 48 H 0.13 1.42 8.14 -51.93 -0.42 1.00 16 49 H 0.09 1.01 7.24 -51.93 -0.38 0.63 16 LS Contribution 399.32 15.07 6.02 6.02 Total: -1.00 -35.91 399.32 -8.95 -44.87 By element: Atomic # 1 Polarization: 5.51 SS G_CDS: -8.10 Total: -2.59 kcal Atomic # 6 Polarization: 3.47 SS G_CDS: 0.05 Total: 3.52 kcal Atomic # 7 Polarization: -42.02 SS G_CDS: -1.27 Total: -43.30 kcal Atomic # 8 Polarization: -24.86 SS G_CDS: -0.98 Total: -25.84 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.67 Total: 17.31 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -35.91 -8.95 -44.87 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273470291.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.552 kcal (2) G-P(sol) polarization free energy of solvation -35.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds