Wall clock time and date at job start Tue Mar 31 2020 23:18:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.45202 * 109.46919 * 2 1 4 4 C 1.34230 * 116.99836 * 180.02562 * 3 2 1 5 5 O 1.20833 * 119.99930 * 359.97438 * 4 3 2 6 6 C 1.50697 * 120.00262 * 180.27336 * 4 3 2 7 7 C 1.52996 * 109.47491 * 179.72204 * 6 4 3 8 8 N 1.46896 * 109.47256 * 180.02562 * 7 6 4 9 9 C 1.47599 * 110.99785 * 266.10420 * 8 7 6 10 10 C 1.52873 * 87.79138 * 221.75540 * 9 8 7 11 11 C 1.47588 * 111.00262 * 170.00082 * 8 7 6 12 12 C 1.52449 * 114.29866 * 139.67027 * 10 9 8 13 13 N 1.46295 * 109.56761 * 177.66930 * 12 10 9 14 14 C 1.46497 * 118.72713 * 164.05263 * 13 12 10 15 15 C 1.53003 * 109.47324 * 270.04555 * 14 13 12 16 16 C 1.50700 * 109.47224 * 179.97438 * 15 14 13 17 17 H 1.08001 * 119.99708 * 359.97438 * 16 15 14 18 18 C 1.37878 * 119.99839 * 179.97438 * 16 15 14 19 19 N 1.31518 * 119.99295 * 180.02562 * 18 16 15 20 20 Si 1.86797 * 120.00232 * 359.97438 * 18 16 15 21 21 H 1.48500 * 109.46864 * 90.00024 * 20 18 16 22 22 H 1.48493 * 109.47048 * 209.99961 * 20 18 16 23 23 H 1.48504 * 109.47107 * 330.00184 * 20 18 16 24 24 C 1.33716 * 122.54564 * 344.10266 * 13 12 10 25 25 O 1.21281 * 118.35748 * 183.27854 * 24 13 12 26 26 C 1.50156 * 123.28056 * 3.25177 * 24 13 12 27 27 O 1.42563 * 114.29235 * 271.62443 * 10 9 8 28 28 H 1.08999 * 109.47371 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47687 * 300.00275 * 1 2 3 30 30 H 1.09002 * 109.47633 * 60.00402 * 1 2 3 31 31 H 1.08998 * 109.47242 * 239.99429 * 2 1 3 32 32 H 1.09004 * 109.46797 * 119.99245 * 2 1 3 33 33 H 1.09004 * 109.46801 * 299.72165 * 6 4 3 34 34 H 1.09000 * 109.47461 * 59.71633 * 6 4 3 35 35 H 1.09004 * 109.47066 * 299.99799 * 7 6 4 36 36 H 1.08994 * 109.47405 * 59.99969 * 7 6 4 37 37 H 1.08996 * 113.49864 * 336.49222 * 9 8 7 38 38 H 1.09005 * 113.49659 * 107.02631 * 9 8 7 39 39 H 1.09004 * 113.49946 * 252.96849 * 11 8 7 40 40 H 1.09004 * 113.50116 * 23.50478 * 11 8 7 41 41 H 1.09001 * 109.46057 * 297.71447 * 12 10 9 42 42 H 1.08997 * 109.45561 * 57.65971 * 12 10 9 43 43 H 1.08998 * 109.47090 * 30.04005 * 14 13 12 44 44 H 1.08998 * 109.47186 * 150.04222 * 14 13 12 45 45 H 1.08996 * 109.47080 * 299.99582 * 15 14 13 46 46 H 1.08998 * 109.47261 * 59.99712 * 15 14 13 47 47 H 0.97000 * 119.99105 * 180.02562 * 19 18 16 48 48 H 1.08998 * 109.35113 * 222.07846 * 26 24 13 49 49 H 1.09001 * 109.22932 * 102.46156 * 26 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3446 1.5449 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9207 2.9374 0.0057 7 6 5.4485 2.8573 0.0107 8 7 6.0100 4.2147 0.0173 9 6 6.3034 4.6725 -1.3549 10 6 7.6089 5.2583 -0.8169 11 6 7.4652 4.1841 0.2615 12 6 8.8091 5.0657 -1.7370 13 7 9.9843 5.7102 -1.1509 14 6 11.3099 5.3615 -1.6679 15 6 11.8699 4.1766 -0.8784 16 6 13.2333 3.8175 -1.4107 17 1 13.6577 4.3781 -2.2304 18 6 13.9387 2.7734 -0.8512 19 7 15.1288 2.4604 -1.3155 20 14 13.2049 1.8042 0.5671 21 1 12.4212 0.6616 0.0328 22 1 14.2964 1.2932 1.4346 23 1 12.3136 2.6874 1.3614 24 6 9.8955 6.6045 -0.1607 25 8 10.9136 7.1369 0.2277 26 6 8.5982 6.9830 0.4937 27 8 7.4963 6.5940 -0.3316 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8932 -0.5137 0.8901 33 1 3.5878 3.4722 -0.8839 34 1 3.5816 3.4669 0.8960 35 1 5.7814 2.3225 0.9002 36 1 5.7876 2.3279 -0.8797 37 1 6.4520 3.8569 -2.0626 38 1 5.6063 5.4268 -1.7198 39 1 7.7462 4.5273 1.2572 40 1 7.9308 3.2353 -0.0053 41 1 9.0035 4.0004 -1.8621 42 1 8.5972 5.5122 -2.7085 43 1 11.2297 5.0911 -2.7207 44 1 11.9776 6.2166 -1.5623 45 1 11.9502 4.4469 0.1745 46 1 11.2023 3.3215 -0.9840 47 1 15.6249 1.7256 -0.9221 48 1 8.5719 8.0619 0.6463 49 1 8.5224 6.4802 1.4579 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273470291.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:18:36 Heat of formation + Delta-G solvation = -144.481706 kcal Electronic energy + Delta-G solvation = -30053.575470 eV Core-core repulsion = 25788.514920 eV Total energy + Delta-G solvation = -4265.060550 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.52444 -41.53898 -40.62310 -38.08708 -37.63201 -37.06481 -35.10354 -33.97517 -32.64594 -32.39898 -30.36223 -28.98173 -27.11134 -27.08347 -26.29191 -24.45825 -23.43465 -22.79173 -21.64493 -21.37307 -19.69088 -19.07973 -18.83926 -18.59327 -17.88102 -17.63849 -17.44530 -17.07083 -16.90980 -16.47048 -16.07606 -15.97598 -15.71603 -15.21634 -15.11752 -14.97835 -14.77957 -14.58328 -14.39367 -14.21553 -13.91707 -13.66160 -13.61924 -13.46281 -13.26530 -12.93756 -12.87707 -12.68774 -12.61645 -12.48988 -12.40321 -12.04727 -11.93664 -11.86104 -11.72627 -11.56688 -11.55422 -11.53297 -11.18146 -10.82269 -10.45134 -10.02745 -9.71031 -8.35012 -6.39592 1.14371 1.27810 1.32394 1.42841 1.44905 1.61488 1.82567 2.29887 2.35277 2.85767 2.99855 3.22634 3.23293 3.55766 3.69081 3.79119 3.93341 3.99363 4.06887 4.09549 4.14279 4.22802 4.29440 4.33932 4.34920 4.40459 4.49165 4.51997 4.54883 4.60348 4.65049 4.70431 4.78486 4.81433 4.87732 4.88883 4.92000 5.00857 5.14725 5.21345 5.28398 5.41557 5.46969 5.59927 5.77935 5.88297 6.19195 6.39250 6.66828 6.69144 7.02631 7.24854 8.81386 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.011340 B = 0.002555 C = 0.002182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2468.574864 B =10956.799544 C =12828.241719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.053 3.947 3 O -0.361 6.361 4 C 0.464 3.536 5 O -0.545 6.545 6 C -0.095 4.095 7 C 0.029 3.971 8 N -0.461 5.461 9 C 0.030 3.970 10 C 0.066 3.934 11 C -0.026 4.026 12 C 0.095 3.905 13 N -0.600 5.600 14 C 0.131 3.869 15 C -0.009 4.009 16 C -0.531 4.531 17 H 0.038 0.962 18 C 0.009 3.991 19 N -0.945 5.945 20 Si 0.948 3.052 21 H -0.257 1.257 22 H -0.284 1.284 23 H -0.260 1.260 24 C 0.472 3.528 25 O -0.592 6.592 26 C 0.064 3.936 27 O -0.332 6.332 28 H 0.096 0.904 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.130 0.870 34 H 0.126 0.874 35 H 0.071 0.929 36 H 0.060 0.940 37 H 0.111 0.889 38 H 0.118 0.882 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.098 0.902 42 H 0.101 0.899 43 H 0.089 0.911 44 H 0.054 0.946 45 H 0.000 1.000 46 H 0.028 0.972 47 H 0.268 0.732 48 H 0.149 0.851 49 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.527 -0.266 1.448 34.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.021 4.021 3 O -0.278 6.278 4 C 0.309 3.691 5 O -0.436 6.436 6 C -0.133 4.133 7 C -0.100 4.100 8 N -0.183 5.183 9 C -0.099 4.099 10 C 0.025 3.975 11 C -0.156 4.156 12 C -0.027 4.027 13 N -0.331 5.331 14 C 0.008 3.992 15 C -0.048 4.048 16 C -0.570 4.570 17 H 0.057 0.943 18 C -0.189 4.189 19 N -0.585 5.585 20 Si 0.772 3.228 21 H -0.181 1.181 22 H -0.209 1.209 23 H -0.184 1.184 24 C 0.261 3.739 25 O -0.473 6.473 26 C -0.015 4.015 27 O -0.250 6.250 28 H 0.115 0.885 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.148 0.852 34 H 0.144 0.856 35 H 0.089 0.911 36 H 0.078 0.922 37 H 0.129 0.871 38 H 0.136 0.864 39 H 0.105 0.895 40 H 0.105 0.895 41 H 0.117 0.883 42 H 0.119 0.881 43 H 0.107 0.893 44 H 0.073 0.927 45 H 0.019 0.981 46 H 0.046 0.954 47 H 0.077 0.923 48 H 0.166 0.834 49 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -34.353 0.053 2.056 34.414 hybrid contribution 1.568 -1.523 0.173 2.193 sum -32.785 -1.470 2.230 32.893 Atomic orbital electron populations 1.21821 0.90485 1.04279 1.03812 1.23258 0.97064 0.79357 1.02402 1.86513 1.24189 1.33506 1.83613 1.24220 0.80578 0.93301 0.71020 1.90693 1.61120 1.44693 1.47071 1.21203 0.94505 0.89258 1.08300 1.22466 0.94011 0.90605 1.02899 1.68903 1.11630 1.20343 1.17387 1.24060 0.93236 1.00514 0.92084 1.22513 0.96225 0.83711 0.95098 1.24461 0.90591 0.99316 1.01187 1.22248 0.82558 1.00010 0.97931 1.47744 1.08328 1.41234 1.35793 1.21320 0.82387 0.97435 0.98015 1.19666 0.94818 0.94790 0.95476 1.21274 1.01995 1.15630 1.18051 0.94350 1.25934 0.95040 0.98253 0.99642 1.70051 1.13847 1.30630 1.43997 0.85691 0.78584 0.79182 0.79369 1.18128 1.20925 1.18381 1.21635 0.93006 0.79008 0.80275 1.90741 1.38412 1.54714 1.63449 1.22771 0.80137 1.04474 0.94145 1.88076 1.42232 1.27449 1.67201 0.88499 0.91227 0.91094 0.91435 0.91632 0.85231 0.85565 0.91077 0.92213 0.87076 0.86353 0.89525 0.89461 0.88349 0.88145 0.89296 0.92703 0.98122 0.95384 0.92347 0.83361 0.87974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 10.29 71.98 0.74 -0.24 16 2 C 0.05 0.65 6.19 71.98 0.45 1.09 16 3 O -0.36 -5.49 10.22 -51.41 -0.53 -6.01 16 4 C 0.46 7.78 7.96 71.23 0.57 8.34 16 5 O -0.55 -12.94 15.73 21.94 0.35 -12.60 16 6 C -0.10 -1.06 6.14 29.85 0.18 -0.87 16 7 C 0.03 0.42 4.11 86.30 0.35 0.78 16 8 N -0.46 -7.03 6.33 -928.83 -5.88 -12.91 16 9 C 0.03 0.37 7.15 83.68 0.60 0.96 16 10 C 0.07 1.22 1.22 -11.05 -0.01 1.20 16 11 C -0.03 -0.50 6.86 83.69 0.57 0.08 16 12 C 0.10 2.07 5.90 86.24 0.51 2.58 16 13 N -0.60 -19.28 2.84 -825.70 -2.34 -21.62 16 14 C 0.13 5.28 5.26 86.38 0.45 5.74 16 15 C -0.01 -0.44 4.36 29.85 0.13 -0.31 16 16 C -0.53 -31.04 9.66 25.60 0.25 -30.80 16 17 H 0.04 2.44 7.99 -2.91 -0.02 2.42 16 18 C 0.01 0.52 5.47 84.65 0.46 0.99 16 19 N -0.95 -59.73 13.96 21.45 0.30 -59.43 16 20 Si 0.95 45.24 27.47 68.60 1.88 47.13 16 21 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 22 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 23 H -0.26 -12.00 6.54 99.48 0.65 -11.35 16 24 C 0.47 15.92 7.58 87.65 0.66 16.59 16 25 O -0.59 -25.97 16.28 -3.03 -0.05 -26.02 16 26 C 0.06 1.48 6.69 71.07 0.48 1.95 16 27 O -0.33 -7.00 10.68 -148.98 -1.59 -8.59 16 28 H 0.10 0.33 8.14 -2.39 -0.02 0.31 16 29 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.07 0.86 8.13 -2.39 -0.02 0.84 16 32 H 0.07 0.86 8.13 -2.38 -0.02 0.84 16 33 H 0.13 0.90 8.14 -2.38 -0.02 0.88 16 34 H 0.13 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.07 1.26 8.04 -2.38 -0.02 1.24 16 36 H 0.06 0.88 7.26 -2.39 -0.02 0.87 16 37 H 0.11 0.97 7.38 -2.39 -0.02 0.96 16 38 H 0.12 1.19 8.14 -2.38 -0.02 1.17 16 39 H 0.09 1.78 7.10 -2.39 -0.02 1.76 16 40 H 0.09 1.66 7.67 -2.38 -0.02 1.64 16 41 H 0.10 2.01 7.86 -2.39 -0.02 1.99 16 42 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 43 H 0.09 3.23 8.04 -2.39 -0.02 3.21 16 44 H 0.05 2.53 7.19 -2.39 -0.02 2.51 16 45 H 0.00 0.02 7.20 -2.39 -0.02 0.00 16 46 H 0.03 1.23 7.57 -2.39 -0.02 1.22 16 47 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 48 H 0.15 2.91 8.14 -2.39 -0.02 2.89 16 49 H 0.10 2.13 7.24 -2.39 -0.02 2.11 16 Total: -1.00 -80.42 399.32 -0.59 -81.01 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: 0.88 Total: 10.97 kcal Atomic # 6 Polarization: 1.68 SS G_CDS: 6.39 Total: 8.07 kcal Atomic # 7 Polarization: -86.05 SS G_CDS: -7.92 Total: -93.97 kcal Atomic # 8 Polarization: -51.40 SS G_CDS: -1.82 Total: -53.22 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 1.88 Total: 47.13 kcal Total: -80.42 -0.59 -81.01 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273470291.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.473 kcal (2) G-P(sol) polarization free energy of solvation -80.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds