Wall clock time and date at job start Tue Mar 31 2020 23:28:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45204 * 109.47115 * 2 1 4 4 C 1.34220 * 116.99725 * 179.97438 * 3 2 1 5 5 O 1.20826 * 120.00557 * 359.97438 * 4 3 2 6 6 C 1.50708 * 119.99853 * 179.97438 * 4 3 2 7 7 H 1.09002 * 109.46828 * 60.00140 * 6 4 3 8 8 C 1.52997 * 109.47141 * 300.00271 * 6 4 3 9 9 N 1.46894 * 109.46991 * 179.97438 * 6 4 3 10 10 C 1.47577 * 111.00003 * 198.90329 * 9 6 4 11 11 C 1.52988 * 87.80446 * 138.30302 * 10 9 6 12 12 C 1.47581 * 111.00418 * 295.00211 * 9 6 4 13 13 C 1.52663 * 113.97063 * 220.62229 * 11 10 9 14 14 O 1.43398 * 108.25862 * 272.20962 * 13 11 10 15 15 C 1.42819 * 113.35127 * 294.57569 * 14 13 11 16 16 C 1.50282 * 110.53323 * 51.38157 * 15 14 13 17 17 O 1.21279 * 118.99537 * 161.41893 * 16 15 14 18 18 N 1.34305 * 122.00960 * 341.43589 * 16 15 14 19 19 C 1.46506 * 119.40661 * 182.02168 * 18 16 15 20 20 C 1.52998 * 109.46718 * 269.97939 * 19 18 16 21 21 C 1.50704 * 109.46763 * 179.97438 * 20 19 18 22 22 H 1.07996 * 120.00080 * 0.02562 * 21 20 19 23 23 C 1.37882 * 119.99897 * 179.97438 * 21 20 19 24 24 N 1.31505 * 119.99714 * 180.02562 * 23 21 20 25 25 Si 1.86798 * 119.99851 * 0.02562 * 23 21 20 26 26 H 1.48500 * 109.47147 * 90.00101 * 25 23 21 27 27 H 1.48504 * 109.47181 * 209.99840 * 25 23 21 28 28 H 1.48500 * 109.47253 * 329.99612 * 25 23 21 29 29 H 1.09002 * 109.47256 * 300.00025 * 1 2 3 30 30 H 1.09002 * 109.47024 * 59.99789 * 1 2 3 31 31 H 1.08996 * 109.47021 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46815 * 240.00278 * 2 1 3 33 33 H 1.08994 * 109.46737 * 120.00190 * 2 1 3 34 34 H 1.09002 * 109.47153 * 299.99670 * 8 6 4 35 35 H 1.09001 * 109.46832 * 179.97438 * 8 6 4 36 36 H 1.09004 * 109.47261 * 59.99842 * 8 6 4 37 37 H 1.08999 * 113.49896 * 253.03679 * 10 9 6 38 38 H 1.09005 * 113.49319 * 23.57303 * 10 9 6 39 39 H 1.08998 * 113.49445 * 336.43015 * 12 9 6 40 40 H 1.08993 * 113.49666 * 106.89976 * 12 9 6 41 41 H 1.08997 * 109.70862 * 31.90300 * 13 11 10 42 42 H 1.09003 * 109.70174 * 152.52084 * 13 11 10 43 43 H 1.09007 * 109.26009 * 171.64975 * 15 14 13 44 44 H 1.08998 * 109.26686 * 291.10596 * 15 14 13 45 45 H 1.08997 * 109.46524 * 29.97696 * 19 18 16 46 46 H 1.08992 * 109.46981 * 149.97684 * 19 18 16 47 47 H 1.09004 * 109.47121 * 299.99511 * 20 19 18 48 48 H 1.09001 * 109.47592 * 59.99520 * 20 19 18 49 49 H 0.97005 * 119.99795 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0808 0.5866 0.0015 6 6 3.9207 2.9374 0.0000 7 1 3.5844 3.4701 0.8895 8 6 3.4498 3.6837 -1.2499 9 7 5.3877 2.8605 0.0014 10 6 5.9837 4.1348 0.4473 11 6 6.9860 3.3135 1.2606 12 6 5.8843 2.2522 1.2509 13 6 7.2821 3.8889 2.6433 14 8 8.3587 4.8279 2.5179 15 6 9.5933 4.2249 2.1284 16 6 9.4005 3.3705 0.9072 17 8 10.3695 3.0632 0.2458 18 7 8.1879 2.9371 0.5259 19 6 8.0707 2.0700 -0.6492 20 6 7.8790 2.9298 -1.9002 21 6 7.7591 2.0379 -3.1091 22 1 7.8136 0.9652 -2.9963 23 6 7.5786 2.5914 -4.3589 24 7 7.4734 1.8131 -5.4137 25 14 7.4835 4.4467 -4.5539 26 1 8.8462 4.9909 -4.7827 27 1 6.6168 4.7789 -5.7131 28 1 6.9120 5.0454 -3.3210 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 3.7861 3.1510 -2.1394 35 1 3.8661 4.6910 -1.2500 36 1 2.3612 3.7407 -1.2504 37 1 6.4430 4.7057 -0.3597 38 1 5.3140 4.7360 1.0623 39 1 5.1877 2.3414 2.0844 40 1 6.2588 1.2369 1.1211 41 1 6.3966 4.3943 3.0285 42 1 7.5719 3.0860 3.3211 43 1 10.3216 5.0059 1.9096 44 1 9.9649 3.6062 2.9452 45 1 8.9776 1.4744 -0.7531 46 1 7.2132 1.4082 -0.5283 47 1 6.9721 3.5254 -1.7963 48 1 8.7365 3.5917 -2.0211 49 1 7.3461 2.2025 -6.2930 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273913061.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:28:39 Heat of formation + Delta-G solvation = -130.759430 kcal Electronic energy + Delta-G solvation = -32376.242330 eV Core-core repulsion = 28111.776823 eV Total energy + Delta-G solvation = -4264.465508 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.84253 -41.49703 -40.22066 -38.57054 -37.63982 -36.47741 -35.08729 -33.91005 -32.52872 -32.07604 -30.36186 -28.77181 -27.47971 -26.66277 -25.70844 -25.20497 -23.47626 -22.67855 -22.29098 -21.37589 -19.56874 -19.13307 -18.70124 -18.51202 -17.80323 -17.65709 -17.44244 -17.09359 -16.72068 -16.44314 -16.11396 -15.60113 -15.46543 -15.32035 -15.04886 -14.82667 -14.67790 -14.51995 -14.37901 -13.91016 -13.77171 -13.59772 -13.48675 -13.27949 -13.06462 -12.99143 -12.90965 -12.77250 -12.55524 -12.49644 -12.43832 -12.08559 -11.92081 -11.89874 -11.65442 -11.53337 -11.42076 -11.41965 -11.18528 -10.76236 -10.38444 -9.79844 -9.68066 -8.30162 -6.31586 1.15859 1.27211 1.30903 1.41639 1.42769 1.56031 1.80932 2.33111 2.66050 2.84143 3.05635 3.25589 3.38198 3.47720 3.64879 3.85569 3.94562 3.98255 4.03248 4.08637 4.16495 4.26720 4.30825 4.33717 4.40042 4.49656 4.54526 4.58449 4.70521 4.72472 4.76511 4.80620 4.83439 4.87093 4.92460 4.95836 5.10394 5.13730 5.18418 5.30521 5.45889 5.48317 5.51904 5.68246 5.80699 5.93010 6.26298 6.47251 6.72186 6.76095 7.04429 7.30319 8.87531 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.008098 B = 0.005342 C = 0.003690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3456.892205 B = 5239.814214 C = 7586.438232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.054 3.946 3 O -0.357 6.357 4 C 0.462 3.538 5 O -0.524 6.524 6 C 0.063 3.937 7 H 0.132 0.868 8 C -0.137 4.137 9 N -0.480 5.480 10 C 0.001 3.999 11 C 0.099 3.901 12 C 0.011 3.989 13 C 0.071 3.929 14 O -0.368 6.368 15 C 0.064 3.936 16 C 0.470 3.530 17 O -0.590 6.590 18 N -0.575 5.575 19 C 0.148 3.852 20 C 0.004 3.996 21 C -0.516 4.516 22 H 0.023 0.977 23 C 0.008 3.992 24 N -0.953 5.953 25 Si 0.949 3.051 26 H -0.279 1.279 27 H -0.277 1.277 28 H -0.243 1.243 29 H 0.077 0.923 30 H 0.065 0.935 31 H 0.096 0.904 32 H 0.051 0.949 33 H 0.072 0.928 34 H 0.033 0.967 35 H 0.083 0.917 36 H 0.093 0.907 37 H 0.069 0.931 38 H 0.134 0.866 39 H 0.121 0.879 40 H 0.070 0.930 41 H 0.160 0.840 42 H 0.089 0.911 43 H 0.140 0.860 44 H 0.118 0.882 45 H 0.034 0.966 46 H 0.082 0.918 47 H 0.047 0.953 48 H -0.016 1.016 49 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.011 7.320 23.796 29.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.020 4.020 3 O -0.273 6.273 4 C 0.305 3.695 5 O -0.412 6.412 6 C -0.046 4.046 7 H 0.149 0.851 8 C -0.194 4.194 9 N -0.204 5.204 10 C -0.128 4.128 11 C 0.012 3.988 12 C -0.118 4.118 13 C -0.006 4.006 14 O -0.285 6.285 15 C -0.016 4.016 16 C 0.259 3.741 17 O -0.470 6.470 18 N -0.306 5.306 19 C 0.025 3.975 20 C -0.034 4.034 21 C -0.554 4.554 22 H 0.041 0.959 23 C -0.188 4.188 24 N -0.594 5.594 25 Si 0.773 3.227 26 H -0.204 1.204 27 H -0.202 1.202 28 H -0.167 1.167 29 H 0.096 0.904 30 H 0.084 0.916 31 H 0.115 0.885 32 H 0.070 0.930 33 H 0.090 0.910 34 H 0.052 0.948 35 H 0.102 0.898 36 H 0.112 0.888 37 H 0.088 0.912 38 H 0.151 0.849 39 H 0.139 0.861 40 H 0.088 0.912 41 H 0.177 0.823 42 H 0.107 0.893 43 H 0.157 0.843 44 H 0.136 0.864 45 H 0.053 0.947 46 H 0.100 0.900 47 H 0.065 0.935 48 H 0.002 0.998 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -14.258 6.733 22.651 27.599 hybrid contribution 0.225 -0.430 -0.890 1.014 sum -14.033 6.303 21.761 26.649 Atomic orbital electron populations 1.21802 0.89935 1.04299 1.03918 1.23242 0.97319 0.79425 1.02022 1.86469 1.23616 1.33370 1.83856 1.23976 0.80826 0.92865 0.71805 1.90706 1.61081 1.44046 1.45379 1.22063 0.90131 0.89125 1.03302 0.85072 1.21701 1.02600 1.00428 0.94689 1.69287 1.05891 1.11514 1.33708 1.24503 0.96277 0.92912 0.99109 1.22155 0.85073 0.97181 0.94425 1.24098 0.95711 0.99085 0.92900 1.23224 0.92606 0.93973 0.90836 1.88153 1.18098 1.33901 1.88398 1.22772 0.88706 0.98006 0.92077 1.22181 0.82356 0.81208 0.88329 1.90741 1.40293 1.59593 1.56417 1.47474 1.06117 1.48545 1.28421 1.21110 0.99924 0.92376 0.84041 1.19606 0.95794 0.95471 0.92577 1.21235 1.48615 0.93241 0.92329 0.95905 1.25889 0.94308 1.03389 0.95225 1.70074 1.52395 1.37470 0.99452 0.85683 0.78413 0.79906 0.78732 1.20443 1.20200 1.16652 0.90370 0.91562 0.88494 0.93001 0.91008 0.94793 0.89831 0.88780 0.91240 0.84864 0.86145 0.91187 0.82293 0.89331 0.84267 0.86440 0.94731 0.89956 0.93531 0.99780 0.92619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 10.29 71.98 0.74 -1.06 16 2 C 0.05 1.09 6.19 71.98 0.45 1.53 16 3 O -0.36 -8.32 10.12 -51.32 -0.52 -8.84 16 4 C 0.46 12.82 7.02 71.24 0.50 13.32 16 5 O -0.52 -18.89 14.84 21.96 0.33 -18.57 16 6 C 0.06 1.42 2.19 44.17 0.10 1.52 16 7 H 0.13 1.63 7.56 -2.39 -0.02 1.61 16 8 C -0.14 -3.24 9.29 71.98 0.67 -2.57 16 9 N -0.48 -13.64 3.82 -906.60 -3.46 -17.10 16 10 C 0.00 0.02 5.80 83.69 0.49 0.50 16 11 C 0.10 2.31 1.67 3.81 0.01 2.31 16 12 C 0.01 0.26 4.78 83.69 0.40 0.66 16 13 C 0.07 0.95 6.14 71.87 0.44 1.39 16 14 O -0.37 -6.78 10.84 -148.98 -1.62 -8.39 16 15 C 0.06 1.37 6.93 71.10 0.49 1.86 16 16 C 0.47 16.38 7.64 87.60 0.67 17.05 16 17 O -0.59 -27.00 16.49 -3.02 -0.05 -27.05 16 18 N -0.58 -20.12 2.69 -779.84 -2.10 -22.21 16 19 C 0.15 6.85 4.49 86.38 0.39 7.24 16 20 C 0.00 0.19 4.09 29.85 0.12 0.31 16 21 C -0.52 -32.88 9.66 25.60 0.25 -32.63 16 22 H 0.02 1.61 7.99 -2.91 -0.02 1.59 16 23 C 0.01 0.51 5.47 84.66 0.46 0.97 16 24 N -0.95 -63.81 13.96 21.45 0.30 -63.52 16 25 Si 0.95 48.17 27.47 68.60 1.88 50.05 16 26 H -0.28 -14.06 7.11 99.48 0.71 -13.36 16 27 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 28 H -0.24 -11.29 6.54 99.48 0.65 -10.64 16 29 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.05 1.25 8.13 -2.39 -0.02 1.23 16 33 H 0.07 1.38 8.13 -2.39 -0.02 1.36 16 34 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.08 1.75 7.85 -2.39 -0.02 1.73 16 36 H 0.09 1.73 8.11 -2.38 -0.02 1.71 16 37 H 0.07 2.09 6.82 -2.39 -0.02 2.08 16 38 H 0.13 1.56 7.37 -2.38 -0.02 1.55 16 39 H 0.12 1.66 7.80 -2.39 -0.02 1.64 16 40 H 0.07 2.14 6.78 -2.39 -0.02 2.13 16 41 H 0.16 0.80 7.84 -2.39 -0.02 0.78 16 42 H 0.09 0.91 8.13 -2.39 -0.02 0.89 16 43 H 0.14 2.72 8.14 -2.38 -0.02 2.70 16 44 H 0.12 1.83 8.14 -2.39 -0.02 1.81 16 45 H 0.03 1.80 7.36 -2.39 -0.02 1.79 16 46 H 0.08 3.88 5.57 -2.39 -0.01 3.86 16 47 H 0.05 2.33 4.40 -2.39 -0.01 2.32 16 48 H -0.02 -0.92 7.57 -2.39 -0.02 -0.94 16 49 H 0.26 16.48 8.31 -92.70 -0.77 15.71 16 Total: -1.00 -92.54 387.20 1.83 -90.72 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: 0.89 Total: 12.51 kcal Atomic # 6 Polarization: 6.24 SS G_CDS: 6.17 Total: 12.40 kcal Atomic # 7 Polarization: -97.57 SS G_CDS: -5.26 Total: -102.83 kcal Atomic # 8 Polarization: -60.99 SS G_CDS: -1.86 Total: -62.85 kcal Atomic # 14 Polarization: 48.17 SS G_CDS: 1.88 Total: 50.05 kcal Total: -92.54 1.83 -90.72 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273913061.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.041 kcal (2) G-P(sol) polarization free energy of solvation -92.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds