Wall clock time and date at job start Tue Mar 31 2020 23:28:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45202 * 109.46823 * 2 1 4 4 C 1.34227 * 116.99926 * 180.02562 * 3 2 1 5 5 O 1.20827 * 120.00415 * 359.97438 * 4 3 2 6 6 C 1.50703 * 119.99909 * 180.02562 * 4 3 2 7 7 H 1.09000 * 109.46933 * 59.99947 * 6 4 3 8 8 C 1.52995 * 109.47190 * 299.99741 * 6 4 3 9 9 N 1.46902 * 109.47173 * 179.97438 * 6 4 3 10 10 C 1.48062 * 110.99911 * 300.00274 * 9 6 4 11 11 C 1.53395 * 86.02385 * 222.76358 * 10 9 6 12 12 C 1.48058 * 111.00145 * 200.55153 * 9 6 4 13 13 C 1.52557 * 113.82760 * 138.14580 * 11 10 9 14 14 N 1.46272 * 109.55817 * 176.48149 * 13 11 10 15 15 C 1.46502 * 118.71506 * 163.91507 * 14 13 11 16 16 C 1.53002 * 109.46897 * 90.00230 * 15 14 13 17 17 C 1.50703 * 109.47123 * 180.02562 * 16 15 14 18 18 H 1.08003 * 119.99768 * 359.97438 * 17 16 15 19 19 C 1.37872 * 119.99947 * 179.97438 * 17 16 15 20 20 N 1.31516 * 120.00284 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99859 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46936 * 359.97438 * 21 19 17 23 23 H 1.48491 * 109.47234 * 120.00276 * 21 19 17 24 24 H 1.48501 * 109.46971 * 240.00314 * 21 19 17 25 25 C 1.33688 * 122.59126 * 343.91537 * 14 13 11 26 26 O 1.21285 * 118.39158 * 183.26913 * 25 14 13 27 27 C 1.50166 * 123.22327 * 3.27149 * 25 14 13 28 28 O 1.42678 * 113.78546 * 268.79738 * 11 10 9 29 29 H 1.09001 * 109.47316 * 60.00133 * 1 2 3 30 30 H 1.09006 * 109.46888 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47265 * 299.99396 * 1 2 3 32 32 H 1.09001 * 109.47265 * 240.00604 * 2 1 3 33 33 H 1.09003 * 109.47739 * 120.00179 * 2 1 3 34 34 H 1.09000 * 109.47351 * 299.99950 * 8 6 4 35 35 H 1.09000 * 109.47120 * 60.00356 * 8 6 4 36 36 H 1.09001 * 109.47021 * 179.97438 * 8 6 4 37 37 H 1.09001 * 113.78681 * 108.49035 * 10 9 6 38 38 H 1.09000 * 113.88917 * 337.05114 * 10 9 6 39 39 H 1.09001 * 113.78515 * 22.95260 * 12 9 6 40 40 H 1.09007 * 113.78275 * 251.50846 * 12 9 6 41 41 H 1.09002 * 109.45614 * 296.50451 * 13 11 10 42 42 H 1.09000 * 109.45407 * 56.46412 * 13 11 10 43 43 H 1.09000 * 109.46998 * 209.99908 * 15 14 13 44 44 H 1.09001 * 109.47022 * 330.00404 * 15 14 13 45 45 H 1.09006 * 109.46678 * 299.99901 * 16 15 14 46 46 H 1.08997 * 109.47398 * 59.99543 * 16 15 14 47 47 H 0.96993 * 120.00037 * 180.02562 * 20 19 17 48 48 H 1.09002 * 109.34721 * 222.08961 * 27 25 14 49 49 H 1.09002 * 109.22743 * 102.46606 * 27 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3446 1.5449 -0.0005 5 8 4.0807 0.5868 -0.0005 6 6 3.9206 2.9376 0.0000 7 1 3.5850 3.4691 0.8905 8 6 3.4484 3.6852 -1.2485 9 7 5.3876 2.8608 -0.0001 10 6 5.8814 2.1423 1.1966 11 6 6.9509 3.2386 1.2819 12 6 5.9852 4.1253 0.4856 13 6 7.2141 3.7338 2.7007 14 7 8.3021 4.7113 2.6842 15 6 8.4893 5.5759 3.8519 16 6 9.4416 4.8993 4.8400 17 6 9.6338 5.7883 6.0416 18 1 9.1276 6.7409 6.0949 19 6 10.4557 5.3857 7.0727 20 7 11.0725 4.2260 7.0075 21 14 10.6944 6.4881 8.5617 22 1 9.8976 7.7296 8.3913 23 1 10.2441 5.7741 9.7834 24 1 12.1317 6.8372 8.6938 25 6 9.1326 4.8469 1.6454 26 8 10.0457 5.6400 1.7367 27 6 8.9905 4.0656 0.3709 28 8 8.1537 2.9248 0.5816 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8900 32 1 1.8933 -0.5137 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 3.7840 3.1536 -2.1390 35 1 2.3599 3.7423 -1.2480 36 1 3.8646 4.6926 -1.2479 37 1 6.2830 1.1523 0.9804 38 1 5.1820 2.1445 2.0327 39 1 5.3153 4.7168 1.1097 40 1 6.4693 4.7113 -0.2957 41 1 6.3120 4.2013 3.0953 42 1 7.4928 2.8911 3.3334 43 1 8.9123 6.5289 3.5343 44 1 7.5272 5.7480 4.3345 45 1 9.0186 3.9461 5.1576 46 1 10.4037 4.7270 4.3574 47 1 11.6504 3.9426 7.7331 48 1 9.9745 3.7353 0.0382 49 1 8.5461 4.7032 -0.3934 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273913336.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:28:19 Heat of formation + Delta-G solvation = -141.064966 kcal Electronic energy + Delta-G solvation = -30612.730006 eV Core-core repulsion = 26347.817617 eV Total energy + Delta-G solvation = -4264.912389 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.63856 -41.56167 -40.41735 -38.14228 -37.38108 -37.01124 -35.14761 -34.14085 -32.45504 -32.05047 -30.02056 -28.77242 -27.59833 -26.38861 -26.19724 -25.30991 -23.63529 -23.28528 -21.68672 -21.24000 -19.71387 -18.83814 -18.68132 -18.59021 -17.80698 -17.60545 -17.42334 -17.16456 -16.91589 -16.47923 -16.13781 -15.78610 -15.52061 -15.09521 -14.91688 -14.82333 -14.57397 -14.36887 -14.26522 -14.24769 -13.75927 -13.58893 -13.34890 -13.28616 -13.23299 -13.00819 -12.91397 -12.88698 -12.59866 -12.56215 -12.49686 -12.43039 -12.05435 -11.90907 -11.72735 -11.52279 -11.46235 -11.28670 -11.16565 -10.61289 -10.43588 -9.96361 -9.67109 -8.23806 -6.36697 1.12584 1.38188 1.40269 1.45620 1.51972 1.53544 1.84343 2.36298 2.40544 2.65461 3.09796 3.15660 3.27576 3.49054 3.62870 3.86868 3.90515 3.99832 4.03621 4.08728 4.11482 4.19621 4.24612 4.32498 4.35555 4.37505 4.52227 4.55588 4.65710 4.69184 4.72770 4.79532 4.85581 4.87186 4.92121 4.93558 5.06424 5.14948 5.16451 5.28254 5.43075 5.45358 5.55529 5.72098 5.78613 5.84431 6.14738 6.41631 6.71252 6.79473 7.05372 7.33187 8.88752 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.015648 B = 0.002376 C = 0.002187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.944567 B =11784.080979 C =12798.212341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.054 3.946 3 O -0.357 6.357 4 C 0.463 3.537 5 O -0.523 6.523 6 C 0.053 3.947 7 H 0.114 0.886 8 C -0.131 4.131 9 N -0.465 5.465 10 C 0.041 3.959 11 C 0.065 3.935 12 C -0.003 4.003 13 C 0.096 3.904 14 N -0.597 5.597 15 C 0.129 3.871 16 C 0.024 3.976 17 C -0.540 4.540 18 H 0.069 0.931 19 C -0.004 4.004 20 N -0.935 5.935 21 Si 0.972 3.028 22 H -0.256 1.256 23 H -0.274 1.274 24 H -0.283 1.283 25 C 0.472 3.528 26 O -0.591 6.591 27 C 0.063 3.937 28 O -0.348 6.348 29 H 0.070 0.930 30 H 0.096 0.904 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.056 0.944 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.090 0.910 38 H 0.104 0.896 39 H 0.115 0.885 40 H 0.108 0.892 41 H 0.120 0.880 42 H 0.065 0.935 43 H 0.059 0.941 44 H 0.095 0.905 45 H -0.005 1.005 46 H -0.028 1.028 47 H 0.263 0.737 48 H 0.136 0.864 49 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.477 -4.356 -17.494 31.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.019 4.019 3 O -0.274 6.274 4 C 0.306 3.694 5 O -0.411 6.411 6 C -0.056 4.056 7 H 0.132 0.868 8 C -0.188 4.188 9 N -0.189 5.189 10 C -0.088 4.088 11 C 0.024 3.976 12 C -0.131 4.131 13 C -0.027 4.027 14 N -0.328 5.328 15 C 0.007 3.993 16 C -0.014 4.014 17 C -0.579 4.579 18 H 0.087 0.913 19 C -0.202 4.202 20 N -0.575 5.575 21 Si 0.796 3.204 22 H -0.180 1.180 23 H -0.200 1.200 24 H -0.209 1.209 25 C 0.260 3.740 26 O -0.472 6.472 27 C -0.016 4.016 28 O -0.266 6.266 29 H 0.089 0.911 30 H 0.115 0.885 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.075 0.925 35 H 0.105 0.895 36 H 0.105 0.895 37 H 0.108 0.892 38 H 0.122 0.878 39 H 0.133 0.867 40 H 0.126 0.874 41 H 0.138 0.862 42 H 0.083 0.917 43 H 0.078 0.922 44 H 0.114 0.886 45 H 0.014 0.986 46 H -0.010 1.010 47 H 0.072 0.928 48 H 0.153 0.847 49 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -24.584 -4.836 -18.111 30.915 hybrid contribution 0.707 0.198 1.818 1.960 sum -23.877 -4.638 -16.293 29.276 Atomic orbital electron populations 1.21818 0.90371 1.04279 1.03829 1.23256 0.97047 0.79235 1.02365 1.86487 1.23654 1.33567 1.83675 1.23904 0.80888 0.92738 0.71825 1.90700 1.60939 1.43902 1.45592 1.22148 0.90008 0.89499 1.03982 0.86833 1.21687 1.02498 1.00538 0.94123 1.68726 1.05583 1.08646 1.35991 1.23866 0.93518 0.98413 0.92957 1.23086 0.86107 0.98349 0.90107 1.24708 0.96269 0.92992 0.99127 1.22262 0.90984 0.92135 0.97284 1.47714 1.31283 1.37221 1.16631 1.21537 1.00323 0.92905 0.84515 1.19178 0.93326 0.95423 0.93506 1.21583 1.28159 1.04749 1.03361 0.91300 1.26071 0.95119 0.96719 1.02242 1.70137 1.31046 1.22326 1.34018 0.85295 0.77932 0.78971 0.78203 1.17971 1.19950 1.20920 1.21592 0.81403 0.83928 0.87037 1.90735 1.33135 1.40140 1.83209 1.22796 0.98158 0.88093 0.92530 1.88132 1.30689 1.31407 1.76373 0.91067 0.88525 0.91170 0.91618 0.91563 0.92461 0.89477 0.89475 0.89167 0.87833 0.86691 0.87410 0.86239 0.91685 0.92203 0.88633 0.98616 1.01005 0.92780 0.84668 0.86230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 10.29 71.98 0.74 -0.29 16 2 C 0.05 0.70 6.19 71.98 0.45 1.15 16 3 O -0.36 -5.60 10.12 -51.39 -0.52 -6.12 16 4 C 0.46 8.58 6.98 71.24 0.50 9.08 16 5 O -0.52 -13.29 14.52 21.96 0.32 -12.97 16 6 C 0.05 0.72 2.24 44.17 0.10 0.82 16 7 H 0.11 0.99 7.62 -2.39 -0.02 0.97 16 8 C -0.13 -1.32 9.30 71.98 0.67 -0.65 16 9 N -0.46 -8.36 5.78 -899.47 -5.20 -13.56 16 10 C 0.04 0.83 5.54 86.21 0.48 1.31 16 11 C 0.06 1.43 1.16 -10.65 -0.01 1.42 16 12 C 0.00 -0.05 6.71 86.21 0.58 0.53 16 13 C 0.10 2.48 5.88 86.28 0.51 2.99 16 14 N -0.60 -21.05 2.83 -825.55 -2.34 -23.39 16 15 C 0.13 5.43 5.20 86.38 0.45 5.88 16 16 C 0.02 1.30 5.29 29.85 0.16 1.46 16 17 C -0.54 -31.24 9.11 25.60 0.23 -31.00 16 18 H 0.07 3.73 7.74 -2.91 -0.02 3.71 16 19 C 0.00 -0.22 5.46 84.65 0.46 0.24 16 20 N -0.94 -58.85 13.29 21.45 0.28 -58.57 16 21 Si 0.97 44.88 29.54 68.60 2.03 46.90 16 22 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 23 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 24 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 25 C 0.47 17.38 7.57 87.66 0.66 18.04 16 26 O -0.59 -27.64 16.33 -3.04 -0.05 -27.69 16 27 C 0.06 1.68 6.66 71.07 0.47 2.15 16 28 O -0.35 -9.52 10.66 -148.98 -1.59 -11.11 16 29 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 30 H 0.10 0.38 8.14 -2.38 -0.02 0.36 16 31 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.07 0.90 8.13 -2.39 -0.02 0.88 16 33 H 0.07 0.90 8.13 -2.39 -0.02 0.89 16 34 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.09 0.66 8.11 -2.39 -0.02 0.64 16 36 H 0.09 0.65 7.91 -2.39 -0.02 0.64 16 37 H 0.09 2.29 7.82 -2.39 -0.02 2.27 16 38 H 0.10 1.65 7.86 -2.39 -0.02 1.63 16 39 H 0.12 1.14 7.39 -2.39 -0.02 1.13 16 40 H 0.11 1.57 7.01 -2.38 -0.02 1.56 16 41 H 0.12 2.23 7.77 -2.39 -0.02 2.21 16 42 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 43 H 0.06 2.71 7.29 -2.39 -0.02 2.70 16 44 H 0.10 3.39 7.96 -2.39 -0.02 3.37 16 45 H 0.00 -0.26 8.14 -2.38 -0.02 -0.28 16 46 H -0.03 -1.84 8.14 -2.39 -0.02 -1.86 16 47 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 48 H 0.14 3.44 8.14 -2.39 -0.02 3.42 16 49 H 0.12 2.39 7.15 -2.39 -0.02 2.37 16 Total: -1.00 -82.94 399.33 0.31 -82.63 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: 0.93 Total: 10.76 kcal Atomic # 6 Polarization: 6.69 SS G_CDS: 6.44 Total: 13.13 kcal Atomic # 7 Polarization: -88.27 SS G_CDS: -7.26 Total: -95.53 kcal Atomic # 8 Polarization: -56.06 SS G_CDS: -1.84 Total: -57.90 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.90 kcal Total: -82.94 0.31 -82.63 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273913336.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.433 kcal (2) G-P(sol) polarization free energy of solvation -82.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds