Wall clock time and date at job start Wed Apr 1 2020 00:20:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34230 * 116.99835 * 2 1 4 4 O 1.20820 * 120.00281 * 0.02562 * 3 2 1 5 5 C 1.50709 * 119.99586 * 180.02562 * 3 2 1 6 6 N 1.46900 * 109.46735 * 184.78792 * 5 3 2 7 7 C 1.44338 * 111.00270 * 301.01177 * 6 5 3 8 8 C 1.53803 * 112.20378 * 215.87399 * 7 6 5 9 9 O 1.44189 * 112.87012 * 318.41682 * 8 7 6 10 10 C 1.40364 * 117.20349 * 317.89172 * 9 8 7 11 11 C 1.54307 * 108.81243 * 92.88000 * 10 9 8 12 12 C 1.54534 * 108.41029 * 158.42675 * 11 10 9 13 13 C 1.51319 * 104.22415 * 269.95007 * 12 11 10 14 14 O 1.21284 * 124.94022 * 164.06404 * 13 12 11 15 15 N 1.34396 * 110.11552 * 344.20546 * 13 12 11 16 16 C 1.46499 * 124.35439 * 179.54461 * 15 13 12 17 17 C 1.52999 * 109.46905 * 269.69714 * 16 15 13 18 18 C 1.50699 * 109.46855 * 179.97438 * 17 16 15 19 19 H 1.08000 * 119.99982 * 359.97438 * 18 17 16 20 20 C 1.37876 * 119.99790 * 180.27431 * 18 17 16 21 21 N 1.31511 * 120.00440 * 359.72300 * 20 18 17 22 22 Si 1.86804 * 119.99990 * 179.72097 * 20 18 17 23 23 H 1.48501 * 109.47014 * 89.99831 * 22 20 18 24 24 H 1.48503 * 109.47212 * 210.00088 * 22 20 18 25 25 H 1.48502 * 109.47083 * 330.00217 * 22 20 18 26 26 C 1.46836 * 111.30055 * 359.26997 * 15 13 12 27 27 C 1.46523 * 111.84853 * 283.15477 * 11 10 9 28 28 H 1.08998 * 109.47030 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47089 * 299.99860 * 1 2 3 30 30 H 1.09003 * 109.46654 * 60.00084 * 1 2 3 31 31 H 1.08990 * 109.47051 * 64.78990 * 5 3 2 32 32 H 1.08999 * 109.47298 * 304.78466 * 5 3 2 33 33 H 1.08999 * 108.93260 * 336.57778 * 7 6 5 34 34 H 1.08999 * 108.93712 * 95.16879 * 7 6 5 35 35 H 1.09004 * 108.80614 * 79.29403 * 8 7 6 36 36 H 1.09001 * 108.80605 * 197.54560 * 8 7 6 37 37 H 1.09003 * 109.57810 * 333.08661 * 10 9 8 38 38 H 1.08993 * 109.58444 * 212.68428 * 10 9 8 39 39 H 1.08998 * 110.48538 * 28.81335 * 12 11 10 40 40 H 1.08997 * 110.48858 * 151.33298 * 12 11 10 41 41 H 1.08995 * 109.47553 * 149.68939 * 16 15 13 42 42 H 1.09003 * 109.46445 * 29.69398 * 16 15 13 43 43 H 1.08997 * 109.47247 * 59.99936 * 17 16 15 44 44 H 1.08998 * 109.46623 * 299.99078 * 17 16 15 45 45 H 0.96996 * 120.00307 * 179.97438 * 21 20 18 46 46 H 1.08998 * 110.24496 * 136.06855 * 26 15 13 47 47 H 1.08996 * 110.24898 * 257.98827 * 26 15 13 48 48 H 1.09002 * 108.91574 * 181.44317 * 27 11 10 49 49 H 1.09000 * 108.91536 * 300.06814 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 -0.0006 6 7 3.9832 2.6787 0.1151 7 6 3.4587 3.4656 -0.9753 8 6 4.4429 4.5561 -1.4310 9 8 5.0947 5.2189 -0.3287 10 6 4.3020 5.5467 0.7823 11 6 4.3834 4.3971 1.8083 12 6 3.9954 4.9536 3.1967 13 6 5.3073 5.4177 3.7911 14 8 5.4141 6.1588 4.7452 15 7 6.3369 4.8917 3.1059 16 6 7.7475 5.1441 3.4103 17 6 8.2292 6.3633 2.6214 18 6 9.6801 6.6233 2.9349 19 1 10.2059 5.9833 3.6280 20 6 10.3346 7.6820 2.3418 21 7 9.6943 8.4617 1.4982 22 14 12.1309 8.0091 2.7365 23 1 12.9909 7.2648 1.7817 24 1 12.4063 9.4637 2.6206 25 1 12.4235 7.5586 4.1209 26 6 5.8664 4.0263 2.0170 27 6 3.5600 3.2521 1.4107 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 3.9517 0.8569 -0.9305 32 1 3.9603 0.7082 0.8431 33 1 3.2466 2.8064 -1.8171 34 1 2.5301 3.9384 -0.6557 35 1 5.2028 4.1006 -2.0660 36 1 3.8990 5.2985 -2.0152 37 1 3.2676 5.6814 0.4659 38 1 4.6703 6.4672 1.2350 39 1 3.3038 5.7896 3.0929 40 1 3.5551 4.1696 3.8126 41 1 8.3409 4.2733 3.1317 42 1 7.8604 5.3343 4.4777 43 1 7.6359 7.2341 2.9001 44 1 8.1163 6.1731 1.5541 45 1 10.1546 9.2067 1.0812 46 1 6.4354 4.2209 1.1079 47 1 5.9581 2.9782 2.3018 48 1 3.6321 2.4815 2.1783 49 1 2.5218 3.5743 1.3307 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273931584.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:20:59 Heat of formation + Delta-G solvation = -141.352202 kcal Electronic energy + Delta-G solvation = -31617.780247 eV Core-core repulsion = 27352.855403 eV Total energy + Delta-G solvation = -4264.924845 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.49766 -40.56144 -38.80923 -37.27773 -36.05863 -35.82606 -34.28627 -32.60162 -30.55532 -30.05110 -28.63272 -27.75653 -26.63496 -26.25043 -25.23149 -23.92174 -21.93058 -21.26389 -20.88070 -19.81982 -18.82785 -18.14913 -17.46181 -16.98449 -16.61590 -16.40957 -16.04951 -15.94471 -15.73637 -15.17467 -14.79230 -14.53089 -14.45751 -14.22744 -14.16667 -13.90799 -13.61418 -13.10441 -13.06581 -12.77238 -12.54067 -12.40415 -12.35092 -12.11018 -11.93770 -11.76889 -11.47155 -11.27947 -11.26313 -11.19338 -11.12034 -10.98304 -10.86933 -10.61078 -10.38657 -9.86027 -9.76070 -9.38676 -9.29938 -9.02202 -8.78390 -8.27364 -7.86261 -5.92276 -3.95355 1.70260 2.27110 3.08555 3.22445 3.37524 3.43316 3.47166 3.73568 3.94580 4.31692 4.42417 4.47587 4.53484 4.56936 4.64554 4.70367 4.74265 4.76021 4.85580 4.97015 5.06485 5.08047 5.27241 5.29661 5.35577 5.43313 5.43584 5.50502 5.63405 5.70146 5.76540 5.82315 5.93171 5.97375 6.17374 6.18849 6.32667 6.41922 6.57875 6.60190 6.95090 7.14062 7.27055 7.48099 7.67672 7.79141 8.00503 8.09337 8.44578 8.79163 9.11611 9.67816 11.18972 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.019169 B = 0.002731 C = 0.002595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.343991 B =10251.610566 C =10788.303606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.362 6.362 3 C 0.425 3.575 4 O -0.507 6.507 5 C 0.064 3.936 6 N -0.496 5.496 7 C 0.016 3.984 8 C 0.069 3.931 9 O -0.361 6.361 10 C 0.082 3.918 11 C -0.099 4.099 12 C -0.143 4.143 13 C 0.511 3.489 14 O -0.540 6.540 15 N -0.607 5.607 16 C 0.129 3.871 17 C 0.013 3.987 18 C -0.520 4.520 19 H 0.056 0.944 20 C 0.059 3.941 21 N -0.891 5.891 22 Si 0.893 3.107 23 H -0.281 1.281 24 H -0.287 1.287 25 H -0.274 1.274 26 C 0.127 3.873 27 C 0.066 3.934 28 H 0.100 0.900 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.124 0.876 32 H 0.122 0.878 33 H 0.074 0.926 34 H 0.065 0.935 35 H 0.091 0.909 36 H 0.053 0.947 37 H 0.049 0.951 38 H 0.093 0.907 39 H 0.098 0.902 40 H 0.098 0.902 41 H 0.064 0.936 42 H 0.068 0.932 43 H 0.019 0.981 44 H 0.022 0.978 45 H 0.260 0.740 46 H 0.099 0.901 47 H 0.062 0.938 48 H 0.075 0.925 49 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.068 -19.169 -7.493 28.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.277 6.277 3 C 0.266 3.734 4 O -0.395 6.395 5 C -0.066 4.066 6 N -0.217 5.217 7 C -0.113 4.113 8 C -0.008 4.008 9 O -0.279 6.279 10 C 0.005 3.995 11 C -0.101 4.101 12 C -0.184 4.184 13 C 0.297 3.703 14 O -0.418 6.418 15 N -0.339 5.339 16 C 0.009 3.991 17 C -0.025 4.025 18 C -0.559 4.559 19 H 0.074 0.926 20 C -0.143 4.143 21 N -0.530 5.530 22 Si 0.721 3.279 23 H -0.207 1.207 24 H -0.213 1.213 25 H -0.199 1.199 26 C 0.004 3.996 27 C -0.061 4.061 28 H 0.119 0.881 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.142 0.858 32 H 0.140 0.860 33 H 0.092 0.908 34 H 0.083 0.917 35 H 0.109 0.891 36 H 0.071 0.929 37 H 0.068 0.932 38 H 0.111 0.889 39 H 0.117 0.883 40 H 0.116 0.884 41 H 0.083 0.917 42 H 0.086 0.914 43 H 0.037 0.963 44 H 0.040 0.960 45 H 0.070 0.930 46 H 0.117 0.883 47 H 0.080 0.920 48 H 0.093 0.907 49 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -19.408 -18.261 -7.136 27.587 hybrid contribution -0.519 0.122 0.056 0.536 sum -19.927 -18.139 -7.080 27.861 Atomic orbital electron populations 1.23256 0.76500 1.03692 1.02496 1.86561 1.23465 1.33947 1.83757 1.25758 0.93900 0.81547 0.72154 1.90670 1.67429 1.36036 1.45328 1.22392 0.84746 0.92352 1.07085 1.61759 1.56975 0.99894 1.03113 1.22663 0.97712 0.96768 0.94127 1.23048 0.96300 0.92736 0.88758 1.87579 1.36934 1.76983 1.26381 1.22421 0.95009 0.96059 0.86046 1.20994 0.96770 0.96742 0.95562 1.22364 0.97769 1.02801 0.95449 1.20570 0.86455 0.80248 0.83015 1.90707 1.86473 1.36538 1.28037 1.48586 1.07400 1.46573 1.31369 1.21770 0.76462 1.00216 1.00682 1.19387 0.95747 0.91859 0.95494 1.21096 0.95707 1.12931 1.26189 0.92607 1.24993 0.98146 0.95999 0.95141 1.69981 1.36416 1.17369 1.29232 0.86583 0.85277 0.77329 0.78723 1.20680 1.21275 1.19871 1.21913 0.92744 0.93191 0.91737 1.21137 0.98029 0.96569 0.90366 0.88135 0.91915 0.91985 0.85839 0.86000 0.90801 0.91688 0.89100 0.92924 0.93232 0.88948 0.88329 0.88388 0.91731 0.91370 0.96284 0.95986 0.93042 0.88255 0.92028 0.90686 0.91731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 10.56 101.05 1.07 1.25 16 2 O -0.36 -2.64 10.57 -39.26 -0.41 -3.05 16 3 C 0.43 3.35 7.28 36.01 0.26 3.62 16 4 O -0.51 -5.23 12.08 -18.75 -0.23 -5.46 16 5 C 0.06 0.40 5.67 -4.97 -0.03 0.37 16 6 N -0.50 -4.39 4.42 -240.71 -1.06 -5.45 16 7 C 0.02 0.14 3.84 -4.78 -0.02 0.13 16 8 C 0.07 0.73 7.02 37.58 0.26 0.99 16 9 O -0.36 -5.29 8.72 -33.78 -0.29 -5.59 16 10 C 0.08 1.12 5.15 37.84 0.19 1.31 16 11 C -0.10 -1.22 0.63 -155.43 -0.10 -1.32 16 12 C -0.14 -1.89 5.78 -26.77 -0.15 -2.05 16 13 C 0.51 9.75 7.88 -10.85 -0.09 9.66 16 14 O -0.54 -12.72 17.59 5.55 0.10 -12.63 16 15 N -0.61 -11.47 2.93 -172.47 -0.51 -11.97 16 16 C 0.13 2.84 5.88 -4.04 -0.02 2.82 16 17 C 0.01 0.35 5.30 -27.88 -0.15 0.21 16 18 C -0.52 -15.16 9.11 -34.44 -0.31 -15.47 16 19 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 20 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 21 N -0.89 -27.64 13.29 55.43 0.74 -26.90 16 22 Si 0.89 22.21 29.54 -169.99 -5.02 17.19 16 23 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 24 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 25 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 26 C 0.13 1.89 6.10 -3.18 -0.02 1.87 16 27 C 0.07 0.64 3.03 -6.38 -0.02 0.62 16 28 H 0.10 0.29 8.14 -51.93 -0.42 -0.14 16 29 H 0.06 0.35 8.13 -51.93 -0.42 -0.07 16 30 H 0.06 0.33 8.13 -51.93 -0.42 -0.09 16 31 H 0.12 0.54 8.06 -51.93 -0.42 0.12 16 32 H 0.12 0.57 7.95 -51.93 -0.41 0.16 16 33 H 0.07 0.56 7.45 -51.93 -0.39 0.17 16 34 H 0.06 0.67 5.49 -51.93 -0.29 0.39 16 35 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.05 0.58 7.17 -51.93 -0.37 0.20 16 38 H 0.09 1.49 7.84 -51.93 -0.41 1.09 16 39 H 0.10 1.22 7.85 -51.93 -0.41 0.81 16 40 H 0.10 1.08 7.94 -51.93 -0.41 0.66 16 41 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 42 H 0.07 1.58 7.92 -51.93 -0.41 1.17 16 43 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.02 0.63 8.14 -51.93 -0.42 0.20 16 45 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 46 H 0.10 1.68 6.65 -51.93 -0.35 1.34 16 47 H 0.06 0.80 7.96 -51.93 -0.41 0.38 16 48 H 0.07 0.64 7.70 -51.93 -0.40 0.24 16 49 H 0.06 0.67 5.97 -51.93 -0.31 0.36 16 LS Contribution 386.27 15.07 5.82 5.82 Total: -1.00 -36.77 386.27 -8.00 -44.77 By element: Atomic # 1 Polarization: 5.52 SS G_CDS: -7.91 Total: -2.39 kcal Atomic # 6 Polarization: 4.87 SS G_CDS: 0.78 Total: 5.65 kcal Atomic # 7 Polarization: -43.49 SS G_CDS: -0.83 Total: -44.33 kcal Atomic # 8 Polarization: -25.89 SS G_CDS: -0.84 Total: -26.72 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -36.77 -8.00 -44.77 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273931584.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.585 kcal (2) G-P(sol) polarization free energy of solvation -36.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds