Wall clock time and date at job start Wed Apr 1 2020 00:21:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34234 * 116.99677 * 2 1 4 4 O 1.20826 * 120.00057 * 0.02562 * 3 2 1 5 5 C 1.50690 * 119.99780 * 179.97438 * 3 2 1 6 6 N 1.46908 * 109.46900 * 180.02562 * 5 3 2 7 7 C 1.48477 * 110.99958 * 66.04883 * 6 5 3 8 8 C 1.54182 * 111.97206 * 192.46941 * 7 6 5 9 9 O 1.39985 * 113.26455 * 318.69656 * 8 7 6 10 10 C 1.44605 * 112.93965 * 94.39952 * 9 8 7 11 11 C 1.46302 * 111.22323 * 280.77394 * 10 9 8 12 12 C 1.54594 * 112.56647 * 182.43064 * 11 10 9 13 13 C 1.51284 * 104.28693 * 145.15385 * 12 11 10 14 14 O 1.21277 * 124.94419 * 164.16486 * 13 12 11 15 15 N 1.34425 * 110.12049 * 344.28070 * 13 12 11 16 16 C 1.46499 * 124.34297 * 179.40078 * 15 13 12 17 17 C 1.53003 * 109.46983 * 269.70027 * 16 15 13 18 18 C 1.50703 * 109.47038 * 180.02562 * 17 16 15 19 19 H 1.08006 * 120.00159 * 359.97438 * 18 17 16 20 20 C 1.37877 * 120.00120 * 180.02562 * 18 17 16 21 21 N 1.31514 * 120.00089 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99938 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.47297 * 269.99556 * 22 20 18 24 24 H 1.48503 * 109.47261 * 149.99737 * 22 20 18 25 25 H 1.48500 * 109.47454 * 29.99730 * 22 20 18 26 26 C 1.46753 * 111.31033 * 359.13862 * 15 13 12 27 27 C 1.44080 * 111.00136 * 297.93157 * 6 5 3 28 28 H 1.08998 * 109.47675 * 299.99624 * 1 2 3 29 29 H 1.08993 * 109.47215 * 60.00274 * 1 2 3 30 30 H 1.09000 * 109.46914 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47685 * 60.00367 * 5 3 2 32 32 H 1.08997 * 109.47382 * 299.99715 * 5 3 2 33 33 H 1.09001 * 108.98482 * 71.82712 * 7 6 5 34 34 H 1.09000 * 108.91557 * 313.06887 * 7 6 5 35 35 H 1.09000 * 108.72475 * 197.71794 * 8 7 6 36 36 H 1.09000 * 108.71927 * 79.67452 * 8 7 6 37 37 H 1.09004 * 109.12800 * 160.32921 * 10 9 8 38 38 H 1.08996 * 109.08527 * 41.19638 * 10 9 8 39 39 H 1.09000 * 110.47748 * 264.05554 * 12 11 10 40 40 H 1.08997 * 110.47787 * 26.55127 * 12 11 10 41 41 H 1.08996 * 109.47171 * 149.70362 * 16 15 13 42 42 H 1.08996 * 109.47177 * 29.70311 * 16 15 13 43 43 H 1.09003 * 109.46825 * 60.00577 * 17 16 15 44 44 H 1.08996 * 109.47396 * 300.00150 * 17 16 15 45 45 H 0.96998 * 119.99255 * 0.02562 * 21 20 18 46 46 H 1.08995 * 110.24863 * 136.19438 * 26 15 13 47 47 H 1.09000 * 110.24029 * 258.10569 * 26 15 13 48 48 H 1.08994 * 109.72645 * 99.89041 * 27 6 5 49 49 H 1.09004 * 109.72359 * 339.21670 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5662 1.2750 0.0006 6 7 3.9827 2.6838 0.0011 7 6 3.5934 3.3533 1.2679 8 6 3.7360 4.8858 1.1780 9 8 4.8968 5.2949 0.5109 10 6 4.6780 5.5511 -0.8954 11 6 4.6425 4.3052 -1.6615 12 6 4.4699 4.5464 -3.1787 13 6 5.2848 3.4485 -3.8264 14 8 5.1995 3.1138 -4.9889 15 7 6.1154 2.8962 -2.9252 16 6 7.0372 1.7955 -3.2166 17 6 6.3377 0.4608 -2.9514 18 6 7.2861 -0.6715 -3.2506 19 1 8.2875 -0.4603 -3.5958 20 6 6.8752 -1.9771 -3.0847 21 7 5.6557 -2.2344 -2.6648 22 14 8.0511 -3.3806 -3.4548 23 1 7.9131 -3.7796 -4.8786 24 1 7.7296 -4.5388 -2.5828 25 1 9.4454 -2.9392 -3.1974 26 6 5.9847 3.5415 -1.6137 27 6 3.5253 3.3579 -1.1873 28 1 -0.3634 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 3.9564 0.7808 -0.8891 32 1 3.9556 0.7811 0.8908 33 1 4.2286 2.9848 2.0734 34 1 2.5560 3.1064 1.4937 35 1 3.7499 5.2958 2.1878 36 1 2.8700 5.2875 0.6519 37 1 5.4840 6.1800 -1.2735 38 1 3.7294 6.0736 -1.0191 39 1 3.4204 4.4633 -3.4610 40 1 4.8624 5.5246 -3.4564 41 1 7.9159 1.8785 -2.5771 42 1 7.3425 1.8444 -4.2618 43 1 5.4590 0.3778 -3.5911 44 1 6.0323 0.4119 -1.9063 45 1 5.0453 -1.5055 -2.4723 46 1 5.9633 2.7904 -0.8241 47 1 6.8093 4.2356 -1.4511 48 1 2.6269 3.9324 -0.9617 49 1 3.3088 2.6257 -1.9653 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273931585.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:21:03 Heat of formation + Delta-G solvation = -143.199000 kcal Electronic energy + Delta-G solvation = -32630.961188 eV Core-core repulsion = 28365.956261 eV Total energy + Delta-G solvation = -4265.004928 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.37996 -40.41678 -38.86431 -37.13403 -36.18946 -35.54499 -34.54773 -32.83978 -30.43657 -29.76003 -28.49994 -27.59984 -27.00468 -25.86068 -25.00844 -23.84427 -21.76890 -21.60183 -20.70460 -19.82862 -18.93618 -17.85359 -17.13895 -16.94208 -16.77131 -16.47024 -16.28729 -16.03442 -15.62047 -15.32469 -14.81503 -14.41600 -14.28799 -14.04008 -13.71615 -13.61632 -13.41709 -13.29284 -13.01395 -12.94271 -12.73580 -12.49874 -12.15817 -12.11565 -11.97201 -11.74915 -11.59363 -11.24052 -11.13251 -10.93145 -10.87980 -10.83715 -10.77704 -10.64386 -10.26490 -10.07438 -10.04693 -9.84599 -9.31341 -8.64226 -8.44400 -8.30490 -7.96712 -6.35377 -4.04202 2.06368 2.67101 3.01629 3.37263 3.46007 3.49138 3.63471 3.64926 3.73821 4.44297 4.51363 4.57082 4.58078 4.72330 4.76708 4.80254 4.92214 4.98137 5.04590 5.10750 5.17013 5.29364 5.38304 5.39887 5.42627 5.43492 5.48486 5.50235 5.61090 5.66567 5.70700 5.75988 5.83856 6.04062 6.05570 6.28091 6.31090 6.42611 6.66053 6.71789 6.90032 6.98770 7.06984 7.34968 7.48806 7.62685 7.78791 8.18798 8.46353 8.68039 8.88503 9.67463 11.05476 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.008973 B = 0.004736 C = 0.003611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3119.790138 B = 5910.285531 C = 7752.795823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.353 6.353 3 C 0.434 3.566 4 O -0.518 6.518 5 C 0.062 3.938 6 N -0.509 5.509 7 C 0.020 3.980 8 C 0.064 3.936 9 O -0.357 6.357 10 C 0.082 3.918 11 C -0.101 4.101 12 C -0.145 4.145 13 C 0.510 3.490 14 O -0.540 6.540 15 N -0.608 5.608 16 C 0.135 3.865 17 C 0.002 3.998 18 C -0.600 4.600 19 H 0.050 0.950 20 C 0.018 3.982 21 N -0.910 5.910 22 Si 1.071 2.929 23 H -0.288 1.288 24 H -0.285 1.285 25 H -0.289 1.289 26 C 0.120 3.880 27 C 0.071 3.929 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.101 0.899 31 H 0.130 0.870 32 H 0.122 0.878 33 H 0.081 0.919 34 H 0.060 0.940 35 H 0.088 0.912 36 H 0.048 0.952 37 H 0.096 0.904 38 H 0.058 0.942 39 H 0.097 0.903 40 H 0.101 0.899 41 H 0.067 0.933 42 H 0.069 0.931 43 H 0.008 0.992 44 H 0.011 0.989 45 H 0.267 0.733 46 H 0.108 0.892 47 H 0.061 0.939 48 H 0.061 0.939 49 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.983 14.289 10.587 19.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.268 6.268 3 C 0.276 3.724 4 O -0.407 6.407 5 C -0.068 4.068 6 N -0.231 5.231 7 C -0.107 4.107 8 C -0.014 4.014 9 O -0.274 6.274 10 C 0.005 3.995 11 C -0.103 4.103 12 C -0.186 4.186 13 C 0.296 3.704 14 O -0.418 6.418 15 N -0.341 5.341 16 C 0.015 3.985 17 C -0.036 4.036 18 C -0.639 4.639 19 H 0.068 0.932 20 C -0.186 4.186 21 N -0.546 5.546 22 Si 0.900 3.100 23 H -0.215 1.215 24 H -0.210 1.210 25 H -0.215 1.215 26 C -0.003 4.003 27 C -0.057 4.057 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.119 0.881 31 H 0.148 0.852 32 H 0.140 0.860 33 H 0.099 0.901 34 H 0.079 0.921 35 H 0.106 0.894 36 H 0.066 0.934 37 H 0.114 0.886 38 H 0.076 0.924 39 H 0.116 0.884 40 H 0.119 0.881 41 H 0.085 0.915 42 H 0.088 0.912 43 H 0.026 0.974 44 H 0.029 0.971 45 H 0.078 0.922 46 H 0.126 0.874 47 H 0.080 0.920 48 H 0.079 0.921 49 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -7.383 12.721 10.048 17.813 hybrid contribution -1.582 1.534 -0.095 2.206 sum -8.965 14.256 9.953 19.561 Atomic orbital electron populations 1.23237 0.76797 1.03735 1.02090 1.86633 1.23192 1.33615 1.83347 1.25604 0.93844 0.81476 0.71495 1.90606 1.67523 1.36202 1.46399 1.22332 0.84881 0.91631 1.07959 1.60978 1.59027 1.00541 1.02577 1.23384 1.00496 0.95325 0.91481 1.22281 0.88282 0.92875 0.97968 1.87841 1.32865 1.86522 1.20173 1.21508 1.02150 0.94444 0.81383 1.21088 0.97611 0.97001 0.94594 1.22395 1.02281 0.99935 0.93945 1.20629 0.80913 0.83020 0.85826 1.90710 1.68517 1.65926 1.16626 1.48596 1.39822 1.34859 1.10814 1.21601 0.90797 0.85399 1.00687 1.19509 0.96565 0.91354 0.96127 1.21943 1.00026 0.92440 1.49518 0.93206 1.25799 0.98872 0.99748 0.94186 1.70765 1.05787 1.36033 1.42043 0.83512 0.74519 0.75368 0.76630 1.21515 1.21027 1.21465 1.22134 0.94224 0.97467 0.86461 1.21882 0.95024 0.97166 0.91657 0.92229 0.92049 0.88084 0.85194 0.86016 0.90060 0.92145 0.89424 0.93371 0.88595 0.92363 0.88431 0.88071 0.91497 0.91241 0.97367 0.97086 0.92212 0.87362 0.92049 0.92067 0.90823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.37 10.56 101.05 1.07 1.44 16 2 O -0.35 -4.96 10.57 -39.27 -0.41 -5.38 16 3 C 0.43 6.03 7.16 36.00 0.26 6.29 16 4 O -0.52 -7.55 12.37 -18.75 -0.23 -7.78 16 5 C 0.06 0.82 5.70 -4.98 -0.03 0.80 16 6 N -0.51 -6.38 2.48 -235.63 -0.59 -6.96 16 7 C 0.02 0.21 5.55 -2.33 -0.01 0.20 16 8 C 0.06 0.60 6.05 37.78 0.23 0.83 16 9 O -0.36 -3.87 10.34 -32.89 -0.34 -4.21 16 10 C 0.08 0.78 4.90 33.97 0.17 0.95 16 11 C -0.10 -1.20 0.63 -155.57 -0.10 -1.30 16 12 C -0.14 -1.85 5.76 -26.76 -0.15 -2.01 16 13 C 0.51 9.44 7.88 -10.86 -0.09 9.35 16 14 O -0.54 -12.48 17.58 5.56 0.10 -12.38 16 15 N -0.61 -10.99 2.93 -172.42 -0.51 -11.50 16 16 C 0.14 2.89 5.88 -4.04 -0.02 2.87 16 17 C 0.00 0.06 4.61 -27.88 -0.13 -0.07 16 18 C -0.60 -16.96 9.11 -34.44 -0.31 -17.27 16 19 H 0.05 1.39 7.74 -52.48 -0.41 0.98 16 20 C 0.02 0.51 5.46 -17.82 -0.10 0.42 16 21 N -0.91 -27.39 13.65 55.43 0.76 -26.64 16 22 Si 1.07 25.32 29.90 -169.99 -5.08 20.24 16 23 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 24 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 25 H -0.29 -6.46 7.11 56.52 0.40 -6.05 16 26 C 0.12 1.73 6.08 -3.12 -0.02 1.71 16 27 C 0.07 0.92 2.93 -4.83 -0.01 0.91 16 28 H 0.06 0.56 8.13 -51.93 -0.42 0.14 16 29 H 0.06 0.65 8.13 -51.93 -0.42 0.23 16 30 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 31 H 0.13 2.08 7.79 -51.93 -0.40 1.67 16 32 H 0.12 1.43 8.12 -51.93 -0.42 1.01 16 33 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.06 0.68 5.78 -51.93 -0.30 0.38 16 35 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.05 0.44 6.58 -51.93 -0.34 0.10 16 37 H 0.10 0.80 8.12 -51.93 -0.42 0.38 16 38 H 0.06 0.48 7.48 -51.93 -0.39 0.09 16 39 H 0.10 1.19 7.86 -51.93 -0.41 0.78 16 40 H 0.10 1.05 7.95 -51.93 -0.41 0.63 16 41 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 42 H 0.07 1.59 7.92 -51.93 -0.41 1.18 16 43 H 0.01 0.23 8.01 -51.93 -0.42 -0.19 16 44 H 0.01 0.28 7.79 -51.93 -0.40 -0.13 16 45 H 0.27 7.98 7.22 -40.82 -0.29 7.69 16 46 H 0.11 1.69 6.37 -51.93 -0.33 1.36 16 47 H 0.06 0.81 7.94 -51.93 -0.41 0.40 16 48 H 0.06 0.78 6.01 -51.93 -0.31 0.47 16 49 H 0.07 1.14 7.13 -51.93 -0.37 0.77 16 LS Contribution 384.05 15.07 5.79 5.79 Total: -1.00 -34.81 384.05 -7.56 -42.38 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: -7.79 Total: 1.33 kcal Atomic # 6 Polarization: 4.37 SS G_CDS: 0.74 Total: 5.12 kcal Atomic # 7 Polarization: -44.76 SS G_CDS: -0.33 Total: -45.09 kcal Atomic # 8 Polarization: -28.86 SS G_CDS: -0.89 Total: -29.75 kcal Atomic # 14 Polarization: 25.32 SS G_CDS: -5.08 Total: 20.24 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -34.81 -7.56 -42.38 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273931585.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.823 kcal (2) G-P(sol) polarization free energy of solvation -34.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds