Wall clock time and date at job start Wed Apr 1 2020 00:21:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34234 * 116.99677 * 2 1 4 4 O 1.20826 * 120.00057 * 0.02562 * 3 2 1 5 5 C 1.50690 * 119.99780 * 179.97438 * 3 2 1 6 6 N 1.46908 * 109.46900 * 180.02562 * 5 3 2 7 7 C 1.48477 * 110.99958 * 66.04883 * 6 5 3 8 8 C 1.54182 * 111.97206 * 192.46941 * 7 6 5 9 9 O 1.39985 * 113.26455 * 318.69656 * 8 7 6 10 10 C 1.44605 * 112.93965 * 94.39952 * 9 8 7 11 11 C 1.46302 * 111.22323 * 280.77394 * 10 9 8 12 12 C 1.54594 * 112.56647 * 182.43064 * 11 10 9 13 13 C 1.51284 * 104.28693 * 145.15385 * 12 11 10 14 14 O 1.21277 * 124.94419 * 164.16486 * 13 12 11 15 15 N 1.34425 * 110.12049 * 344.28070 * 13 12 11 16 16 C 1.46499 * 124.34297 * 179.40078 * 15 13 12 17 17 C 1.53003 * 109.46983 * 269.70027 * 16 15 13 18 18 C 1.50703 * 109.47038 * 180.02562 * 17 16 15 19 19 H 1.08006 * 120.00159 * 359.97438 * 18 17 16 20 20 C 1.37877 * 120.00120 * 180.02562 * 18 17 16 21 21 N 1.31514 * 120.00089 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99938 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.47297 * 269.99556 * 22 20 18 24 24 H 1.48503 * 109.47261 * 149.99737 * 22 20 18 25 25 H 1.48500 * 109.47454 * 29.99730 * 22 20 18 26 26 C 1.46753 * 111.31033 * 359.13862 * 15 13 12 27 27 C 1.44080 * 111.00136 * 297.93157 * 6 5 3 28 28 H 1.08998 * 109.47675 * 299.99624 * 1 2 3 29 29 H 1.08993 * 109.47215 * 60.00274 * 1 2 3 30 30 H 1.09000 * 109.46914 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47685 * 60.00367 * 5 3 2 32 32 H 1.08997 * 109.47382 * 299.99715 * 5 3 2 33 33 H 1.09001 * 108.98482 * 71.82712 * 7 6 5 34 34 H 1.09000 * 108.91557 * 313.06887 * 7 6 5 35 35 H 1.09000 * 108.72475 * 197.71794 * 8 7 6 36 36 H 1.09000 * 108.71927 * 79.67452 * 8 7 6 37 37 H 1.09004 * 109.12800 * 160.32921 * 10 9 8 38 38 H 1.08996 * 109.08527 * 41.19638 * 10 9 8 39 39 H 1.09000 * 110.47748 * 264.05554 * 12 11 10 40 40 H 1.08997 * 110.47787 * 26.55127 * 12 11 10 41 41 H 1.08996 * 109.47171 * 149.70362 * 16 15 13 42 42 H 1.08996 * 109.47177 * 29.70311 * 16 15 13 43 43 H 1.09003 * 109.46825 * 60.00577 * 17 16 15 44 44 H 1.08996 * 109.47396 * 300.00150 * 17 16 15 45 45 H 0.96998 * 119.99255 * 0.02562 * 21 20 18 46 46 H 1.08995 * 110.24863 * 136.19438 * 26 15 13 47 47 H 1.09000 * 110.24029 * 258.10569 * 26 15 13 48 48 H 1.08994 * 109.72645 * 99.89041 * 27 6 5 49 49 H 1.09004 * 109.72359 * 339.21670 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5662 1.2750 0.0006 6 7 3.9827 2.6838 0.0011 7 6 3.5934 3.3533 1.2679 8 6 3.7360 4.8858 1.1780 9 8 4.8968 5.2949 0.5109 10 6 4.6780 5.5511 -0.8954 11 6 4.6425 4.3052 -1.6615 12 6 4.4699 4.5464 -3.1787 13 6 5.2848 3.4485 -3.8264 14 8 5.1995 3.1138 -4.9889 15 7 6.1154 2.8962 -2.9252 16 6 7.0372 1.7955 -3.2166 17 6 6.3377 0.4608 -2.9514 18 6 7.2861 -0.6715 -3.2506 19 1 8.2875 -0.4603 -3.5958 20 6 6.8752 -1.9771 -3.0847 21 7 5.6557 -2.2344 -2.6648 22 14 8.0511 -3.3806 -3.4548 23 1 7.9131 -3.7796 -4.8786 24 1 7.7296 -4.5388 -2.5828 25 1 9.4454 -2.9392 -3.1974 26 6 5.9847 3.5415 -1.6137 27 6 3.5253 3.3579 -1.1873 28 1 -0.3634 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 3.9564 0.7808 -0.8891 32 1 3.9556 0.7811 0.8908 33 1 4.2286 2.9848 2.0734 34 1 2.5560 3.1064 1.4937 35 1 3.7499 5.2958 2.1878 36 1 2.8700 5.2875 0.6519 37 1 5.4840 6.1800 -1.2735 38 1 3.7294 6.0736 -1.0191 39 1 3.4204 4.4633 -3.4610 40 1 4.8624 5.5246 -3.4564 41 1 7.9159 1.8785 -2.5771 42 1 7.3425 1.8444 -4.2618 43 1 5.4590 0.3778 -3.5911 44 1 6.0323 0.4119 -1.9063 45 1 5.0453 -1.5055 -2.4723 46 1 5.9633 2.7904 -0.8241 47 1 6.8093 4.2356 -1.4511 48 1 2.6269 3.9324 -0.9617 49 1 3.3088 2.6257 -1.9653 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273931585.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:21:02 Heat of formation + Delta-G solvation = -166.822570 kcal Electronic energy + Delta-G solvation = -32631.985583 eV Core-core repulsion = 28365.956261 eV Total energy + Delta-G solvation = -4266.029323 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.48585 -41.59206 -40.02044 -38.13479 -37.54786 -36.68341 -36.28489 -34.59704 -31.65930 -31.15985 -29.69337 -28.64843 -27.95356 -27.23250 -26.21972 -25.45503 -23.53100 -22.70486 -21.72404 -20.91740 -20.37335 -19.05671 -18.88843 -18.12927 -17.92720 -17.68530 -17.34080 -17.10791 -16.82770 -16.53434 -16.03943 -15.65921 -15.49936 -15.28797 -15.12723 -14.99651 -14.79099 -14.57308 -14.36535 -14.25141 -14.05918 -13.79820 -13.53241 -13.48626 -13.06633 -12.92283 -12.80808 -12.70854 -12.41042 -12.20585 -12.07131 -12.03354 -11.93199 -11.90456 -11.87020 -11.77962 -11.51744 -11.02208 -10.73622 -10.54687 -10.51327 -9.60397 -9.40917 -8.67864 -6.38480 0.93492 1.53211 1.55613 1.62704 1.65935 1.80543 2.14214 2.46202 2.58881 2.91188 3.17486 3.33793 3.48278 3.58653 3.70285 3.71593 3.89332 4.06501 4.13946 4.16118 4.21044 4.21966 4.23975 4.37779 4.41145 4.44996 4.50053 4.57266 4.62482 4.63060 4.68135 4.73359 4.77159 4.79800 4.81650 4.95007 5.05994 5.12481 5.16898 5.24043 5.30951 5.60439 5.64682 5.94307 5.99350 6.17713 6.29281 6.32446 6.52958 6.56006 7.17222 7.43230 8.72806 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.008973 B = 0.004736 C = 0.003611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3119.790138 B = 5910.285531 C = 7752.795823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.373 6.373 3 C 0.436 3.564 4 O -0.524 6.524 5 C 0.066 3.934 6 N -0.512 5.512 7 C 0.020 3.980 8 C 0.064 3.936 9 O -0.366 6.366 10 C 0.080 3.920 11 C -0.083 4.083 12 C -0.129 4.129 13 C 0.495 3.505 14 O -0.596 6.596 15 N -0.611 5.611 16 C 0.147 3.853 17 C 0.016 3.984 18 C -0.619 4.619 19 H 0.053 0.947 20 C -0.033 4.033 21 N -0.931 5.931 22 Si 1.120 2.880 23 H -0.279 1.279 24 H -0.280 1.280 25 H -0.265 1.265 26 C 0.118 3.882 27 C 0.076 3.924 28 H 0.072 0.928 29 H 0.057 0.943 30 H 0.124 0.876 31 H 0.094 0.906 32 H 0.136 0.864 33 H 0.089 0.911 34 H 0.054 0.946 35 H 0.110 0.890 36 H 0.055 0.945 37 H 0.119 0.881 38 H 0.082 0.918 39 H 0.106 0.894 40 H 0.140 0.860 41 H 0.086 0.914 42 H 0.049 0.951 43 H -0.035 1.035 44 H 0.006 0.994 45 H 0.254 0.746 46 H 0.095 0.905 47 H 0.085 0.915 48 H 0.068 0.932 49 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.495 16.236 12.118 21.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.288 6.288 3 C 0.278 3.722 4 O -0.414 6.414 5 C -0.064 4.064 6 N -0.235 5.235 7 C -0.106 4.106 8 C -0.014 4.014 9 O -0.284 6.284 10 C 0.004 3.996 11 C -0.085 4.085 12 C -0.169 4.169 13 C 0.284 3.716 14 O -0.479 6.479 15 N -0.342 5.342 16 C 0.026 3.974 17 C -0.022 4.022 18 C -0.657 4.657 19 H 0.071 0.929 20 C -0.231 4.231 21 N -0.568 5.568 22 Si 0.941 3.059 23 H -0.205 1.205 24 H -0.205 1.205 25 H -0.190 1.190 26 C -0.004 4.004 27 C -0.052 4.052 28 H 0.090 0.910 29 H 0.076 0.924 30 H 0.142 0.858 31 H 0.112 0.888 32 H 0.153 0.847 33 H 0.107 0.893 34 H 0.072 0.928 35 H 0.128 0.872 36 H 0.073 0.927 37 H 0.137 0.863 38 H 0.101 0.899 39 H 0.125 0.875 40 H 0.158 0.842 41 H 0.104 0.896 42 H 0.067 0.933 43 H -0.017 1.017 44 H 0.024 0.976 45 H 0.064 0.936 46 H 0.113 0.887 47 H 0.103 0.897 48 H 0.086 0.914 49 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -6.906 14.713 11.623 19.982 hybrid contribution -1.799 0.890 -0.555 2.083 sum -8.705 15.604 11.069 21.018 Atomic orbital electron populations 1.23510 0.74906 1.05475 1.02520 1.86613 1.25228 1.33712 1.83225 1.25591 0.93881 0.81440 0.71254 1.90580 1.67719 1.36300 1.46839 1.22187 0.84890 0.92503 1.06819 1.61029 1.59022 1.00015 1.03408 1.23481 1.00237 0.96524 0.90363 1.22385 0.88198 0.91523 0.99296 1.87844 1.33579 1.86382 1.20578 1.21643 1.04479 0.92925 0.80570 1.21092 0.95284 0.97700 0.94404 1.22377 1.01716 0.99123 0.93689 1.21683 0.80825 0.83883 0.85203 1.90668 1.70063 1.67946 1.19177 1.48643 1.39081 1.33867 1.12586 1.21189 0.91604 0.84766 0.99886 1.19307 0.94804 0.93433 0.94613 1.22360 1.00560 0.93552 1.49269 0.92883 1.27375 0.99570 1.02971 0.93234 1.70889 1.06638 1.35551 1.43699 0.82908 0.73576 0.72523 0.76904 1.20549 1.20506 1.18983 1.22350 0.96667 0.97539 0.83859 1.21798 0.95930 0.96551 0.90956 0.90966 0.92414 0.85824 0.88758 0.84661 0.89292 0.92765 0.87197 0.92703 0.86335 0.89939 0.87547 0.84229 0.89599 0.93260 1.01654 0.97593 0.93616 0.88716 0.89724 0.91374 0.94402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 10.56 113.37 1.20 1.80 16 2 O -0.37 -10.81 10.57 -51.46 -0.54 -11.35 16 3 C 0.44 12.52 7.16 71.23 0.51 13.03 16 4 O -0.52 -15.28 12.37 21.96 0.27 -15.01 16 5 C 0.07 1.86 5.70 85.55 0.49 2.35 16 6 N -0.51 -12.73 2.48 -899.40 -2.23 -14.97 16 7 C 0.02 0.40 5.55 86.40 0.48 0.88 16 8 C 0.06 1.00 6.05 72.38 0.44 1.44 16 9 O -0.37 -6.57 10.34 -140.59 -1.45 -8.02 16 10 C 0.08 1.20 4.90 69.92 0.34 1.54 16 11 C -0.08 -1.80 0.63 -52.87 -0.03 -1.83 16 12 C -0.13 -3.05 5.76 30.58 0.18 -2.87 16 13 C 0.49 18.61 7.88 87.90 0.69 19.30 16 14 O -0.60 -28.79 17.58 -3.02 -0.05 -28.84 16 15 N -0.61 -22.38 2.93 -817.99 -2.40 -24.78 16 16 C 0.15 6.51 5.88 86.38 0.51 7.02 16 17 C 0.02 0.88 4.61 29.85 0.14 1.01 16 18 C -0.62 -35.92 9.11 25.60 0.23 -35.68 16 19 H 0.05 2.98 7.74 -2.91 -0.02 2.96 16 20 C -0.03 -1.95 5.46 84.65 0.46 -1.49 16 21 N -0.93 -57.90 13.65 21.45 0.29 -57.61 16 22 Si 1.12 50.89 29.90 68.60 2.05 52.94 16 23 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 24 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 25 H -0.27 -10.98 7.11 99.48 0.71 -10.28 16 26 C 0.12 3.23 6.08 86.84 0.53 3.76 16 27 C 0.08 1.95 2.93 87.16 0.26 2.20 16 28 H 0.07 1.31 8.13 -2.39 -0.02 1.29 16 29 H 0.06 1.23 8.13 -2.39 -0.02 1.21 16 30 H 0.12 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.09 3.36 7.79 -2.39 -0.02 3.34 16 32 H 0.14 3.32 8.12 -2.39 -0.02 3.30 16 33 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.05 1.15 5.78 -2.39 -0.01 1.13 16 35 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.05 0.80 6.58 -2.39 -0.02 0.78 16 37 H 0.12 1.34 8.12 -2.38 -0.02 1.32 16 38 H 0.08 0.93 7.48 -2.39 -0.02 0.91 16 39 H 0.11 2.42 7.86 -2.39 -0.02 2.40 16 40 H 0.14 2.31 7.95 -2.39 -0.02 2.29 16 41 H 0.09 3.43 8.14 -2.39 -0.02 3.41 16 42 H 0.05 2.36 7.92 -2.39 -0.02 2.34 16 43 H -0.03 -2.15 8.01 -2.39 -0.02 -2.17 16 44 H 0.01 0.32 7.79 -2.39 -0.02 0.30 16 45 H 0.25 16.08 7.22 -92.71 -0.67 15.41 16 46 H 0.09 2.93 6.37 -2.39 -0.02 2.91 16 47 H 0.08 1.99 7.94 -2.39 -0.02 1.97 16 48 H 0.07 1.64 6.01 -2.39 -0.01 1.63 16 49 H 0.04 1.23 7.13 -2.39 -0.02 1.21 16 Total: -1.00 -79.41 384.05 3.39 -76.01 By element: Atomic # 1 Polarization: 18.11 SS G_CDS: 1.05 Total: 19.16 kcal Atomic # 6 Polarization: 6.04 SS G_CDS: 6.41 Total: 12.46 kcal Atomic # 7 Polarization: -93.01 SS G_CDS: -4.34 Total: -97.35 kcal Atomic # 8 Polarization: -61.44 SS G_CDS: -1.78 Total: -63.22 kcal Atomic # 14 Polarization: 50.89 SS G_CDS: 2.05 Total: 52.94 kcal Total: -79.41 3.39 -76.01 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273931585.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.809 kcal (2) G-P(sol) polarization free energy of solvation -79.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds