Wall clock time and date at job start Tue Mar 31 2020 23:28:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45199 * 109.47276 * 2 1 4 4 C 1.34229 * 117.00086 * 179.97438 * 3 2 1 5 5 O 1.20821 * 120.00234 * 359.97438 * 4 3 2 6 6 C 1.50700 * 120.00008 * 179.97438 * 4 3 2 7 7 H 1.08999 * 109.47223 * 299.99922 * 6 4 3 8 8 C 1.53005 * 109.47068 * 59.99665 * 6 4 3 9 9 N 1.46496 * 109.47142 * 179.97438 * 6 4 3 10 10 C 1.46250 * 118.79789 * 120.00271 * 9 6 4 11 11 C 1.52174 * 109.96469 * 162.76316 * 10 9 6 12 12 C 1.53889 * 110.67420 * 170.21435 * 11 10 9 13 13 C 1.54150 * 104.96727 * 139.78619 * 12 11 10 14 14 N 1.47963 * 107.03512 * 1.63476 * 13 12 11 15 15 C 1.46900 * 111.00526 * 214.29686 * 14 13 12 16 16 C 1.50690 * 109.47530 * 175.78277 * 15 14 13 17 17 H 1.08006 * 120.00038 * 355.14328 * 16 15 14 18 18 C 1.37883 * 120.00392 * 175.14388 * 16 15 14 19 19 N 1.31514 * 119.99495 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00330 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47322 * 270.00188 * 20 18 16 22 22 H 1.48498 * 109.47049 * 149.99874 * 20 18 16 23 23 H 1.48502 * 109.47094 * 30.00263 * 20 18 16 24 24 C 1.48668 * 105.91422 * 334.87033 * 14 13 12 25 25 O 1.42275 * 110.66023 * 47.14096 * 11 10 9 26 26 C 1.43061 * 113.25741 * 293.88918 * 25 11 10 27 27 C 1.33840 * 118.79855 * 299.99942 * 9 6 4 28 28 O 1.21284 * 118.64931 * 2.58736 * 27 9 6 29 29 H 1.08989 * 109.47343 * 300.00604 * 1 2 3 30 30 H 1.08999 * 109.46810 * 60.00889 * 1 2 3 31 31 H 1.09007 * 109.47010 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47710 * 239.98944 * 2 1 3 33 33 H 1.09008 * 109.46496 * 119.99584 * 2 1 3 34 34 H 1.08994 * 109.47053 * 300.00184 * 8 6 4 35 35 H 1.08999 * 109.46889 * 60.00052 * 8 6 4 36 36 H 1.08996 * 109.46914 * 180.02562 * 8 6 4 37 37 H 1.09003 * 109.38771 * 42.61042 * 10 9 6 38 38 H 1.09003 * 109.38403 * 282.91950 * 10 9 6 39 39 H 1.08998 * 110.34542 * 20.91048 * 12 11 10 40 40 H 1.09005 * 110.42660 * 258.69935 * 12 11 10 41 41 H 1.09002 * 109.92390 * 242.29434 * 13 12 11 42 42 H 1.09003 * 110.09406 * 121.07481 * 13 12 11 43 43 H 1.09003 * 109.46593 * 55.78300 * 15 14 13 44 44 H 1.08994 * 109.47009 * 295.78946 * 15 14 13 45 45 H 0.97003 * 120.00089 * 359.97438 * 19 18 16 46 46 H 1.08995 * 110.67418 * 156.87608 * 24 14 13 47 47 H 1.09000 * 110.66870 * 280.02456 * 24 14 13 48 48 H 1.09000 * 109.39620 * 168.43911 * 26 25 11 49 49 H 1.08998 * 109.39545 * 288.16328 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0808 0.5866 0.0015 6 6 3.9208 2.9374 0.0000 7 1 3.5853 3.4690 -0.8905 8 6 3.4486 3.6851 1.2486 9 7 5.3837 2.8607 0.0014 10 6 6.1218 3.4629 -1.1083 11 6 7.5808 3.6528 -0.7197 12 6 8.4214 4.0549 -1.9444 13 6 9.3992 5.1259 -1.4218 14 7 9.1412 5.2784 0.0272 15 6 9.3399 6.6699 0.4538 16 6 8.9691 6.8074 1.9079 17 1 8.5469 5.9672 2.4394 18 6 9.1688 8.0057 2.5601 19 7 9.6825 9.0289 1.9129 20 14 8.7086 8.1763 4.3625 21 1 7.3008 8.6358 4.4725 22 1 9.6048 9.1671 5.0106 23 1 8.8543 6.8614 5.0371 24 6 7.7323 4.8527 0.2374 25 8 8.0987 2.4706 -0.1210 26 6 7.4920 2.1622 1.1374 27 6 5.9960 2.2421 1.0181 28 8 5.3156 1.7251 1.8788 29 1 -0.3633 0.5139 0.8898 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5140 -0.8898 33 1 1.8933 -0.5138 0.8901 34 1 2.3601 3.7421 1.2479 35 1 3.7840 3.1535 2.1390 36 1 3.8648 4.6924 1.2479 37 1 5.6833 4.4307 -1.3517 38 1 6.0612 2.8106 -1.9795 39 1 7.7822 4.4727 -2.7221 40 1 8.9708 3.1950 -2.3277 41 1 9.2209 6.0724 -1.9323 42 1 10.4281 4.8047 -1.5840 43 1 8.7097 7.3271 -0.1455 44 1 10.3855 6.9459 0.3178 45 1 9.9211 8.9404 0.9769 46 1 7.5739 4.5434 1.2704 47 1 7.0439 5.6523 -0.0360 48 1 7.7776 1.1546 1.4397 49 1 7.8338 2.8745 1.8882 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274030453.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:28:54 Heat of formation + Delta-G solvation = -140.702980 kcal Electronic energy + Delta-G solvation = -31907.428395 eV Core-core repulsion = 27642.531703 eV Total energy + Delta-G solvation = -4264.896692 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.51009 -40.32157 -38.81477 -36.77911 -36.41164 -35.74132 -33.42734 -32.50105 -31.60956 -30.95229 -28.79273 -27.71590 -26.32848 -25.27729 -25.16923 -23.48614 -22.68605 -21.77122 -20.61452 -20.32188 -18.69393 -18.06709 -17.47029 -17.17182 -16.82503 -16.63849 -16.07816 -16.03151 -15.25756 -14.87150 -14.58437 -14.45873 -14.39873 -14.00018 -13.72618 -13.68198 -13.37111 -13.19387 -13.08296 -12.88072 -12.75116 -12.51160 -12.40618 -12.17224 -12.02038 -11.83958 -11.74523 -11.57739 -11.45055 -11.27739 -11.01384 -10.83027 -10.74362 -10.73417 -10.43474 -10.39208 -10.12795 -10.00615 -9.23231 -8.94999 -8.68291 -8.46521 -7.54737 -6.44214 -4.14036 2.07111 2.17695 2.57886 2.86227 3.39994 3.44685 3.60137 3.66199 4.16524 4.39232 4.46606 4.50163 4.62735 4.64958 4.70030 4.72381 4.75788 4.84602 4.97512 4.99493 5.16235 5.26756 5.32218 5.34197 5.35354 5.41475 5.45772 5.46800 5.52994 5.61631 5.65270 5.74803 5.81223 5.96055 6.01802 6.09919 6.18973 6.27063 6.27835 6.35632 6.79981 6.92792 6.98967 7.26838 7.53885 7.63723 7.82041 8.04282 8.19046 8.46640 8.78911 9.56869 10.95437 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.014077 B = 0.003273 C = 0.002903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1988.543557 B = 8552.802185 C = 9641.642935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.063 3.937 3 O -0.359 6.359 4 C 0.456 3.544 5 O -0.486 6.486 6 C 0.158 3.842 7 H 0.124 0.876 8 C -0.167 4.167 9 N -0.594 5.594 10 C 0.099 3.901 11 C 0.093 3.907 12 C -0.109 4.109 13 C 0.034 3.966 14 N -0.502 5.502 15 C 0.174 3.826 16 C -0.593 4.593 17 H 0.055 0.945 18 C 0.017 3.983 19 N -0.912 5.912 20 Si 1.071 2.929 21 H -0.288 1.288 22 H -0.283 1.283 23 H -0.287 1.287 24 C 0.034 3.966 25 O -0.344 6.344 26 C 0.051 3.949 27 C 0.504 3.496 28 O -0.530 6.530 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.078 0.922 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.078 0.922 35 H 0.085 0.915 36 H 0.077 0.923 37 H 0.090 0.910 38 H 0.075 0.925 39 H 0.080 0.920 40 H 0.086 0.914 41 H 0.040 0.960 42 H 0.075 0.925 43 H -0.019 1.019 44 H 0.026 0.974 45 H 0.267 0.733 46 H 0.084 0.916 47 H 0.051 0.949 48 H 0.129 0.871 49 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.095 -13.785 -9.054 22.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.011 4.011 3 O -0.276 6.276 4 C 0.296 3.704 5 O -0.371 6.371 6 C 0.052 3.948 7 H 0.142 0.858 8 C -0.224 4.224 9 N -0.329 5.329 10 C -0.024 4.024 11 C 0.052 3.948 12 C -0.147 4.147 13 C -0.095 4.095 14 N -0.226 5.226 15 C 0.048 3.952 16 C -0.631 4.631 17 H 0.073 0.927 18 C -0.187 4.187 19 N -0.548 5.548 20 Si 0.900 3.100 21 H -0.215 1.215 22 H -0.209 1.209 23 H -0.213 1.213 24 C -0.095 4.095 25 O -0.262 6.262 26 C -0.028 4.028 27 C 0.293 3.707 28 O -0.407 6.407 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.097 0.903 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.097 0.903 35 H 0.104 0.896 36 H 0.096 0.904 37 H 0.108 0.892 38 H 0.093 0.907 39 H 0.098 0.902 40 H 0.104 0.896 41 H 0.058 0.942 42 H 0.093 0.907 43 H -0.002 1.002 44 H 0.044 0.956 45 H 0.078 0.922 46 H 0.102 0.898 47 H 0.069 0.931 48 H 0.146 0.854 49 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -14.709 -13.744 -7.094 21.344 hybrid contribution -0.655 -0.532 -1.789 1.978 sum -15.364 -14.275 -8.883 22.776 Atomic orbital electron populations 1.21800 0.92583 1.02924 1.03522 1.22996 0.95241 0.80285 1.02573 1.86465 1.24332 1.32379 1.84444 1.23882 0.80751 0.92908 0.72849 1.90670 1.60243 1.42626 1.43521 1.20528 0.81026 0.90190 1.03034 0.85824 1.22184 1.02241 1.00866 0.97154 1.47398 1.04499 1.57344 1.23660 1.22148 0.92088 0.99061 0.89075 1.22209 0.90469 0.86716 0.95370 1.22285 0.97738 0.99806 0.94896 1.22903 0.99355 0.96611 0.90603 1.64821 1.19508 1.25771 1.12506 1.20026 0.96154 0.82386 0.96618 1.21963 1.45881 1.00036 0.95213 0.92702 1.25829 0.94468 0.92220 1.06183 1.70776 1.39718 1.32191 1.12111 0.83501 0.76468 0.75709 0.74371 1.21487 1.20889 1.21290 1.23511 0.91998 0.94414 0.99545 1.88035 1.62251 1.42176 1.33716 1.22809 0.86674 1.04605 0.88693 1.21034 0.92149 0.76636 0.80881 1.90673 1.65353 1.44879 1.39782 0.91386 0.91513 0.90292 0.91461 0.91211 0.90294 0.89648 0.90439 0.89227 0.90664 0.90188 0.89568 0.94207 0.90699 1.00195 0.95566 0.92240 0.89780 0.93090 0.85364 0.88087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 10.29 37.16 0.38 -0.58 16 2 C 0.06 0.60 6.19 37.16 0.23 0.83 16 3 O -0.36 -4.18 10.12 -39.26 -0.40 -4.57 16 4 C 0.46 6.23 6.53 36.01 0.24 6.47 16 5 O -0.49 -8.24 14.19 -25.96 -0.37 -8.61 16 6 C 0.16 1.86 3.17 -69.08 -0.22 1.64 16 7 H 0.12 1.02 7.87 -51.93 -0.41 0.61 16 8 C -0.17 -1.92 9.03 37.16 0.34 -1.58 16 9 N -0.59 -8.07 2.60 -168.56 -0.44 -8.51 16 10 C 0.10 1.17 5.14 -4.60 -0.02 1.14 16 11 C 0.09 1.35 0.92 -89.93 -0.08 1.26 16 12 C -0.11 -1.41 6.26 -25.67 -0.16 -1.57 16 13 C 0.03 0.56 6.71 -2.64 -0.02 0.54 16 14 N -0.50 -10.43 5.35 -232.09 -1.24 -11.67 16 15 C 0.17 4.35 3.95 -4.98 -0.02 4.33 16 16 C -0.59 -16.33 8.68 -34.44 -0.30 -16.63 16 17 H 0.05 1.51 6.73 -52.48 -0.35 1.16 16 18 C 0.02 0.48 5.46 -17.82 -0.10 0.39 16 19 N -0.91 -27.22 13.65 55.43 0.76 -26.46 16 20 Si 1.07 25.06 29.90 -169.99 -5.08 19.98 16 21 H -0.29 -6.47 7.11 56.52 0.40 -6.06 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 24 C 0.03 0.61 4.45 -2.20 -0.01 0.60 16 25 O -0.34 -5.46 10.39 -35.23 -0.37 -5.82 16 26 C 0.05 0.79 6.35 35.81 0.23 1.01 16 27 C 0.50 8.12 6.14 -11.60 -0.07 8.05 16 28 O -0.53 -9.78 13.03 -16.09 -0.21 -9.99 16 29 H 0.07 0.43 8.14 -51.94 -0.42 0.01 16 30 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.08 0.37 8.14 -51.92 -0.42 -0.06 16 32 H 0.07 0.62 8.13 -51.93 -0.42 0.20 16 33 H 0.07 0.72 8.13 -51.92 -0.42 0.30 16 34 H 0.08 0.74 8.11 -51.93 -0.42 0.32 16 35 H 0.08 1.22 6.10 -51.93 -0.32 0.91 16 36 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.09 0.87 7.84 -51.93 -0.41 0.46 16 38 H 0.08 0.78 8.13 -51.93 -0.42 0.36 16 39 H 0.08 0.81 7.83 -51.93 -0.41 0.41 16 40 H 0.09 1.04 8.07 -51.93 -0.42 0.63 16 41 H 0.04 0.65 7.67 -51.93 -0.40 0.25 16 42 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 43 H -0.02 -0.50 7.97 -51.93 -0.41 -0.92 16 44 H 0.03 0.70 7.82 -51.93 -0.41 0.30 16 45 H 0.27 7.92 7.19 -40.82 -0.29 7.63 16 46 H 0.08 1.66 5.02 -51.93 -0.26 1.40 16 47 H 0.05 0.94 7.70 -51.93 -0.40 0.54 16 48 H 0.13 1.77 8.14 -51.93 -0.42 1.35 16 49 H 0.10 1.62 6.58 -51.93 -0.34 1.28 16 LS Contribution 385.55 15.07 5.81 5.81 Total: -1.00 -34.97 385.55 -8.97 -43.95 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: -7.85 Total: 0.00 kcal Atomic # 6 Polarization: 5.49 SS G_CDS: 0.41 Total: 5.90 kcal Atomic # 7 Polarization: -45.72 SS G_CDS: -0.92 Total: -46.64 kcal Atomic # 8 Polarization: -27.65 SS G_CDS: -1.34 Total: -29.00 kcal Atomic # 14 Polarization: 25.06 SS G_CDS: -5.08 Total: 19.98 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -34.97 -8.97 -43.95 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274030453.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.757 kcal (2) G-P(sol) polarization free energy of solvation -34.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds