Wall clock time and date at job start Tue Mar 31 2020 23:28:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45199 * 109.47276 * 2 1 4 4 C 1.34229 * 117.00086 * 179.97438 * 3 2 1 5 5 O 1.20821 * 120.00234 * 359.97438 * 4 3 2 6 6 C 1.50700 * 120.00008 * 179.97438 * 4 3 2 7 7 H 1.08999 * 109.47223 * 299.99922 * 6 4 3 8 8 C 1.53005 * 109.47068 * 59.99665 * 6 4 3 9 9 N 1.46496 * 109.47142 * 179.97438 * 6 4 3 10 10 C 1.46250 * 118.79789 * 120.00271 * 9 6 4 11 11 C 1.52174 * 109.96469 * 162.76316 * 10 9 6 12 12 C 1.53889 * 110.67420 * 170.21435 * 11 10 9 13 13 C 1.54150 * 104.96727 * 139.78619 * 12 11 10 14 14 N 1.47963 * 107.03512 * 1.63476 * 13 12 11 15 15 C 1.46900 * 111.00526 * 214.29686 * 14 13 12 16 16 C 1.50690 * 109.47530 * 175.78277 * 15 14 13 17 17 H 1.08006 * 120.00038 * 355.14328 * 16 15 14 18 18 C 1.37883 * 120.00392 * 175.14388 * 16 15 14 19 19 N 1.31514 * 119.99495 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00330 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47322 * 270.00188 * 20 18 16 22 22 H 1.48498 * 109.47049 * 149.99874 * 20 18 16 23 23 H 1.48502 * 109.47094 * 30.00263 * 20 18 16 24 24 C 1.48668 * 105.91422 * 334.87033 * 14 13 12 25 25 O 1.42275 * 110.66023 * 47.14096 * 11 10 9 26 26 C 1.43061 * 113.25741 * 293.88918 * 25 11 10 27 27 C 1.33840 * 118.79855 * 299.99942 * 9 6 4 28 28 O 1.21284 * 118.64931 * 2.58736 * 27 9 6 29 29 H 1.08989 * 109.47343 * 300.00604 * 1 2 3 30 30 H 1.08999 * 109.46810 * 60.00889 * 1 2 3 31 31 H 1.09007 * 109.47010 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47710 * 239.98944 * 2 1 3 33 33 H 1.09008 * 109.46496 * 119.99584 * 2 1 3 34 34 H 1.08994 * 109.47053 * 300.00184 * 8 6 4 35 35 H 1.08999 * 109.46889 * 60.00052 * 8 6 4 36 36 H 1.08996 * 109.46914 * 180.02562 * 8 6 4 37 37 H 1.09003 * 109.38771 * 42.61042 * 10 9 6 38 38 H 1.09003 * 109.38403 * 282.91950 * 10 9 6 39 39 H 1.08998 * 110.34542 * 20.91048 * 12 11 10 40 40 H 1.09005 * 110.42660 * 258.69935 * 12 11 10 41 41 H 1.09002 * 109.92390 * 242.29434 * 13 12 11 42 42 H 1.09003 * 110.09406 * 121.07481 * 13 12 11 43 43 H 1.09003 * 109.46593 * 55.78300 * 15 14 13 44 44 H 1.08994 * 109.47009 * 295.78946 * 15 14 13 45 45 H 0.97003 * 120.00089 * 359.97438 * 19 18 16 46 46 H 1.08995 * 110.67418 * 156.87608 * 24 14 13 47 47 H 1.09000 * 110.66870 * 280.02456 * 24 14 13 48 48 H 1.09000 * 109.39620 * 168.43911 * 26 25 11 49 49 H 1.08998 * 109.39545 * 288.16328 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0808 0.5866 0.0015 6 6 3.9208 2.9374 0.0000 7 1 3.5853 3.4690 -0.8905 8 6 3.4486 3.6851 1.2486 9 7 5.3837 2.8607 0.0014 10 6 6.1218 3.4629 -1.1083 11 6 7.5808 3.6528 -0.7197 12 6 8.4214 4.0549 -1.9444 13 6 9.3992 5.1259 -1.4218 14 7 9.1412 5.2784 0.0272 15 6 9.3399 6.6699 0.4538 16 6 8.9691 6.8074 1.9079 17 1 8.5469 5.9672 2.4394 18 6 9.1688 8.0057 2.5601 19 7 9.6825 9.0289 1.9129 20 14 8.7086 8.1763 4.3625 21 1 7.3008 8.6358 4.4725 22 1 9.6048 9.1671 5.0106 23 1 8.8543 6.8614 5.0371 24 6 7.7323 4.8527 0.2374 25 8 8.0987 2.4706 -0.1210 26 6 7.4920 2.1622 1.1374 27 6 5.9960 2.2421 1.0181 28 8 5.3156 1.7251 1.8788 29 1 -0.3633 0.5139 0.8898 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5140 -0.8898 33 1 1.8933 -0.5138 0.8901 34 1 2.3601 3.7421 1.2479 35 1 3.7840 3.1535 2.1390 36 1 3.8648 4.6924 1.2479 37 1 5.6833 4.4307 -1.3517 38 1 6.0612 2.8106 -1.9795 39 1 7.7822 4.4727 -2.7221 40 1 8.9708 3.1950 -2.3277 41 1 9.2209 6.0724 -1.9323 42 1 10.4281 4.8047 -1.5840 43 1 8.7097 7.3271 -0.1455 44 1 10.3855 6.9459 0.3178 45 1 9.9211 8.9404 0.9769 46 1 7.5739 4.5434 1.2704 47 1 7.0439 5.6523 -0.0360 48 1 7.7776 1.1546 1.4397 49 1 7.8338 2.8745 1.8882 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274030453.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:28:53 Heat of formation + Delta-G solvation = -165.256893 kcal Electronic energy + Delta-G solvation = -31908.493133 eV Core-core repulsion = 27642.531703 eV Total energy + Delta-G solvation = -4265.961430 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.62493 -41.40201 -40.06084 -37.92839 -37.72336 -36.83558 -35.35952 -33.50156 -32.71131 -32.07793 -30.08760 -29.07044 -27.89492 -26.62328 -26.20287 -24.65847 -24.03885 -22.90429 -22.08857 -21.44316 -19.81813 -19.28298 -18.90416 -18.38595 -18.24523 -17.67244 -17.35503 -17.08181 -16.51946 -16.07772 -15.80275 -15.67741 -15.63591 -15.37632 -15.18380 -15.03411 -14.60911 -14.45052 -14.19191 -14.03173 -13.64756 -13.52208 -13.36120 -13.32272 -13.31532 -13.18367 -12.94254 -12.85883 -12.60716 -12.57278 -12.52005 -12.28613 -12.14252 -11.96396 -11.93038 -11.57062 -11.46713 -11.28584 -10.74531 -10.61759 -10.43230 -10.02610 -9.20232 -8.70814 -6.41059 1.06490 1.18534 1.44196 1.50331 1.58585 1.76822 1.87496 2.50548 2.52011 3.00509 3.12582 3.28308 3.43482 3.54037 3.59680 3.74961 3.81733 3.88668 3.96018 4.05203 4.11980 4.18709 4.26722 4.29315 4.32879 4.39038 4.48648 4.54565 4.65255 4.65656 4.70164 4.78910 4.80098 4.86155 4.88024 4.89700 5.02415 5.06381 5.11798 5.16340 5.23274 5.40381 5.65805 5.81587 5.94009 6.12381 6.24449 6.36993 6.60214 6.63401 6.88589 7.38311 8.69436 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.014077 B = 0.003273 C = 0.002903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1988.543557 B = 8552.802185 C = 9641.642935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.055 3.945 3 O -0.355 6.355 4 C 0.456 3.544 5 O -0.525 6.525 6 C 0.153 3.847 7 H 0.170 0.830 8 C -0.160 4.160 9 N -0.593 5.593 10 C 0.099 3.901 11 C 0.096 3.904 12 C -0.097 4.097 13 C 0.028 3.972 14 N -0.523 5.523 15 C 0.188 3.812 16 C -0.600 4.600 17 H 0.048 0.952 18 C -0.032 4.032 19 N -0.935 5.935 20 Si 1.115 2.885 21 H -0.270 1.270 22 H -0.281 1.281 23 H -0.276 1.276 24 C 0.036 3.964 25 O -0.353 6.353 26 C 0.053 3.947 27 C 0.499 3.501 28 O -0.562 6.562 29 H 0.067 0.933 30 H 0.075 0.925 31 H 0.098 0.902 32 H 0.069 0.931 33 H 0.055 0.945 34 H 0.101 0.899 35 H 0.051 0.949 36 H 0.081 0.919 37 H 0.120 0.880 38 H 0.103 0.897 39 H 0.120 0.880 40 H 0.101 0.899 41 H 0.041 0.959 42 H 0.075 0.925 43 H -0.033 1.033 44 H -0.001 1.001 45 H 0.256 0.744 46 H 0.060 0.940 47 H 0.048 0.952 48 H 0.138 0.862 49 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.247 -14.261 -10.682 24.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.018 4.018 3 O -0.272 6.272 4 C 0.298 3.702 5 O -0.413 6.413 6 C 0.048 3.952 7 H 0.187 0.813 8 C -0.218 4.218 9 N -0.326 5.326 10 C -0.023 4.023 11 C 0.056 3.944 12 C -0.134 4.134 13 C -0.100 4.100 14 N -0.247 5.247 15 C 0.061 3.939 16 C -0.638 4.638 17 H 0.067 0.933 18 C -0.230 4.230 19 N -0.573 5.573 20 Si 0.937 3.063 21 H -0.195 1.195 22 H -0.207 1.207 23 H -0.201 1.201 24 C -0.093 4.093 25 O -0.272 6.272 26 C -0.026 4.026 27 C 0.288 3.712 28 O -0.441 6.441 29 H 0.086 0.914 30 H 0.094 0.906 31 H 0.117 0.883 32 H 0.087 0.913 33 H 0.073 0.927 34 H 0.119 0.881 35 H 0.070 0.930 36 H 0.100 0.900 37 H 0.138 0.862 38 H 0.121 0.879 39 H 0.138 0.862 40 H 0.119 0.881 41 H 0.059 0.941 42 H 0.093 0.907 43 H -0.015 1.015 44 H 0.018 0.982 45 H 0.065 0.935 46 H 0.078 0.922 47 H 0.067 0.933 48 H 0.155 0.845 49 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -16.885 -14.218 -8.771 23.753 hybrid contribution 0.024 -0.427 -1.316 1.384 sum -16.861 -14.645 -10.087 24.506 Atomic orbital electron populations 1.21811 0.89881 1.04387 1.03939 1.23246 0.97311 0.79292 1.01986 1.86468 1.23283 1.33565 1.83857 1.24273 0.81086 0.93202 0.71667 1.90655 1.61168 1.43967 1.45528 1.20875 0.79756 0.89597 1.04956 0.81292 1.22119 1.03646 1.00367 0.95684 1.47456 1.05596 1.56293 1.23288 1.22326 0.89809 1.01207 0.88923 1.22272 0.92931 0.84562 0.94658 1.22325 0.97281 0.99072 0.94767 1.23006 1.00741 0.98186 0.88026 1.64656 1.21662 1.22579 1.15829 1.19679 0.94010 0.84851 0.95359 1.22268 1.45213 0.99745 0.96616 0.93329 1.27238 0.93837 0.92068 1.09843 1.70895 1.41587 1.33052 1.11734 0.82941 0.77153 0.76269 0.69940 1.19538 1.20681 1.20075 1.23462 0.90318 0.95997 0.99490 1.88024 1.62821 1.42575 1.33747 1.22749 0.86825 1.04705 0.88322 1.21076 0.92163 0.76726 0.81283 1.90657 1.65905 1.46454 1.41133 0.91388 0.90593 0.88328 0.91283 0.92690 0.88069 0.92990 0.90000 0.86202 0.87900 0.86194 0.88088 0.94055 0.90657 1.01547 0.98248 0.93469 0.92203 0.93333 0.84453 0.89639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 10.29 71.98 0.74 -0.77 16 2 C 0.06 0.99 6.19 71.98 0.45 1.44 16 3 O -0.36 -7.66 10.12 -51.41 -0.52 -8.18 16 4 C 0.46 11.80 6.53 71.24 0.47 12.26 16 5 O -0.53 -17.57 14.19 28.88 0.41 -17.16 16 6 C 0.15 3.20 3.17 44.25 0.14 3.34 16 7 H 0.17 1.98 7.87 -2.39 -0.02 1.96 16 8 C -0.16 -3.43 9.03 71.98 0.65 -2.78 16 9 N -0.59 -14.90 2.60 -806.13 -2.09 -16.99 16 10 C 0.10 1.96 5.14 86.15 0.44 2.40 16 11 C 0.10 2.57 0.92 -10.35 -0.01 2.56 16 12 C -0.10 -2.16 6.26 31.28 0.20 -1.97 16 13 C 0.03 0.90 6.71 86.49 0.58 1.48 16 14 N -0.52 -21.86 5.35 -888.19 -4.75 -26.61 16 15 C 0.19 9.66 3.95 85.55 0.34 10.00 16 16 C -0.60 -33.81 8.68 25.60 0.22 -33.59 16 17 H 0.05 2.75 6.73 -2.91 -0.02 2.73 16 18 C -0.03 -1.81 5.46 84.66 0.46 -1.35 16 19 N -0.94 -56.90 13.65 21.45 0.29 -56.61 16 20 Si 1.12 50.51 29.90 68.60 2.05 52.56 16 21 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 22 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 23 H -0.28 -11.85 7.11 99.48 0.71 -11.15 16 24 C 0.04 1.27 4.45 86.38 0.38 1.66 16 25 O -0.35 -10.81 10.39 -148.98 -1.55 -12.36 16 26 C 0.05 1.65 6.35 71.11 0.45 2.10 16 27 C 0.50 15.97 6.14 87.67 0.54 16.50 16 28 O -0.56 -21.20 13.03 17.65 0.23 -20.97 16 29 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.10 0.67 8.14 -2.38 -0.02 0.65 16 32 H 0.07 1.21 8.13 -2.39 -0.02 1.19 16 33 H 0.05 1.14 8.13 -2.38 -0.02 1.12 16 34 H 0.10 1.67 8.11 -2.39 -0.02 1.65 16 35 H 0.05 1.49 6.10 -2.39 -0.01 1.48 16 36 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.12 1.71 7.84 -2.39 -0.02 1.69 16 38 H 0.10 1.60 8.13 -2.39 -0.02 1.58 16 39 H 0.12 1.79 7.83 -2.39 -0.02 1.77 16 40 H 0.10 2.05 8.07 -2.38 -0.02 2.03 16 41 H 0.04 1.30 7.67 -2.39 -0.02 1.28 16 42 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 43 H -0.03 -1.75 7.97 -2.39 -0.02 -1.77 16 44 H 0.00 -0.03 7.82 -2.39 -0.02 -0.05 16 45 H 0.26 15.69 7.19 -92.71 -0.67 15.02 16 46 H 0.06 2.42 5.02 -2.39 -0.01 2.41 16 47 H 0.05 1.74 7.70 -2.39 -0.02 1.73 16 48 H 0.14 3.88 8.14 -2.39 -0.02 3.86 16 49 H 0.09 2.89 6.58 -2.39 -0.02 2.88 16 Total: -1.00 -79.40 385.55 1.17 -78.23 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: 1.05 Total: 14.83 kcal Atomic # 6 Polarization: 7.23 SS G_CDS: 6.05 Total: 13.28 kcal Atomic # 7 Polarization: -93.66 SS G_CDS: -6.55 Total: -100.21 kcal Atomic # 8 Polarization: -57.25 SS G_CDS: -1.43 Total: -58.68 kcal Atomic # 14 Polarization: 50.51 SS G_CDS: 2.05 Total: 52.56 kcal Total: -79.40 1.17 -78.23 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274030453.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.028 kcal (2) G-P(sol) polarization free energy of solvation -79.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds