Wall clock time and date at job start Tue Mar 31 2020 23:28:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 O 1.45200 * 109.47093 * 2 1 4 4 C 1.34226 * 116.99978 * 180.02562 * 3 2 1 5 5 O 1.20821 * 120.00047 * 359.97438 * 4 3 2 6 6 C 1.50700 * 119.99967 * 179.97438 * 4 3 2 7 7 H 1.09000 * 109.46932 * 59.99547 * 6 4 3 8 8 C 1.53001 * 109.47240 * 299.99866 * 6 4 3 9 9 N 1.46502 * 109.47188 * 179.97438 * 6 4 3 10 10 C 1.46241 * 118.80423 * 240.00354 * 9 6 4 11 11 C 1.52170 * 109.95591 * 162.72539 * 10 9 6 12 12 C 1.53889 * 110.68825 * 170.27606 * 11 10 9 13 13 C 1.54147 * 104.96555 * 139.76781 * 12 11 10 14 14 N 1.47962 * 107.03853 * 1.64241 * 13 12 11 15 15 C 1.46899 * 110.99893 * 214.29499 * 14 13 12 16 16 C 1.50702 * 109.47174 * 175.77191 * 15 14 13 17 17 H 1.08003 * 119.99984 * 355.08061 * 16 15 14 18 18 C 1.37873 * 120.00288 * 175.07501 * 16 15 14 19 19 N 1.31520 * 120.00141 * 180.02562 * 18 16 15 20 20 Si 1.86796 * 120.00060 * 0.02562 * 18 16 15 21 21 H 1.48506 * 109.47029 * 269.99876 * 20 18 16 22 22 H 1.48500 * 109.47183 * 149.99769 * 20 18 16 23 23 H 1.48498 * 109.46988 * 29.99819 * 20 18 16 24 24 C 1.48657 * 105.91233 * 334.86495 * 14 13 12 25 25 O 1.42275 * 110.65717 * 47.18819 * 11 10 9 26 26 C 1.43078 * 113.24958 * 293.87919 * 25 11 10 27 27 C 1.33844 * 118.79439 * 60.02575 * 9 6 4 28 28 O 1.21273 * 118.65206 * 2.60515 * 27 9 6 29 29 H 1.08995 * 109.47370 * 60.00087 * 1 2 3 30 30 H 1.08997 * 109.46610 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46388 * 299.99775 * 1 2 3 32 32 H 1.08993 * 109.46756 * 239.99950 * 2 1 3 33 33 H 1.08995 * 109.47370 * 119.99913 * 2 1 3 34 34 H 1.09002 * 109.46829 * 60.00176 * 8 6 4 35 35 H 1.09001 * 109.47208 * 179.97438 * 8 6 4 36 36 H 1.08994 * 109.47142 * 300.00097 * 8 6 4 37 37 H 1.09006 * 109.38925 * 42.57361 * 10 9 6 38 38 H 1.09011 * 109.38934 * 282.87494 * 10 9 6 39 39 H 1.09000 * 110.34117 * 20.89274 * 12 11 10 40 40 H 1.08996 * 110.43088 * 258.68461 * 12 11 10 41 41 H 1.09001 * 109.92144 * 242.29381 * 13 12 11 42 42 H 1.09003 * 110.09209 * 121.08426 * 13 12 11 43 43 H 1.08999 * 109.47134 * 55.77357 * 15 14 13 44 44 H 1.08999 * 109.47577 * 295.77240 * 15 14 13 45 45 H 0.96994 * 119.99954 * 180.02562 * 19 18 16 46 46 H 1.09009 * 110.67009 * 156.86828 * 24 14 13 47 47 H 1.08999 * 110.67967 * 280.01861 * 24 14 13 48 48 H 1.08998 * 109.40993 * 288.13773 * 26 25 11 49 49 H 1.09003 * 109.30452 * 168.37430 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0808 0.5867 -0.0005 6 6 3.9208 2.9374 -0.0012 7 1 3.5851 3.4698 0.8888 8 6 3.4488 3.6840 -1.2505 9 7 5.3838 2.8608 -0.0010 10 6 6.1209 3.4642 1.1085 11 6 7.5414 2.9198 1.1454 12 6 8.4017 3.7126 2.1452 13 6 9.2668 2.6522 2.8544 14 7 8.9328 1.3443 2.2486 15 6 9.0011 0.2688 3.2469 16 6 8.5555 -1.0273 2.6204 17 1 8.1768 -1.0361 1.6089 18 6 8.6313 -2.2020 3.3382 19 7 8.2428 -3.3332 2.7912 20 14 9.2857 -2.1869 5.0877 21 1 10.7560 -2.3945 5.0680 22 1 8.6423 -3.2755 5.8663 23 1 8.9790 -0.8785 5.7196 24 6 7.5543 1.4847 1.7102 25 8 8.1239 2.9488 -0.1523 26 6 7.4878 2.0612 -1.0768 27 6 5.9970 2.2414 -1.0168 28 8 5.3218 1.8071 -1.9258 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3632 0.5138 0.8901 32 1 1.8933 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8899 34 1 2.3603 3.7411 -1.2500 35 1 3.8650 4.6914 -1.2507 36 1 3.7844 3.1516 -2.1404 37 1 5.6187 3.2291 2.0470 38 1 6.1511 4.5459 0.9771 39 1 7.7668 4.2277 2.8662 40 1 9.0342 4.4278 1.6195 41 1 9.0372 2.6374 3.9199 42 1 10.3243 2.8711 2.7057 43 1 8.3485 0.5100 4.0860 44 1 10.0266 0.1671 3.6019 45 1 8.2958 -4.1595 3.2964 46 1 7.3747 0.7578 0.9179 47 1 6.8174 1.3777 2.5062 48 1 7.7386 1.0317 -0.8216 49 1 7.8383 2.2798 -2.0855 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274030454.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:28:58 Heat of formation + Delta-G solvation = -131.387110 kcal Electronic energy + Delta-G solvation = -32249.606543 eV Core-core repulsion = 27985.113817 eV Total energy + Delta-G solvation = -4264.492726 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.43453 -40.17712 -38.76531 -36.64366 -36.36457 -35.65211 -33.07923 -32.38999 -31.56619 -31.05670 -28.83012 -27.82409 -26.86304 -25.39164 -25.19098 -23.34774 -22.36362 -21.56838 -20.33132 -20.22533 -18.54789 -18.04425 -17.35918 -17.06264 -16.70954 -16.44916 -16.09419 -15.60890 -15.43607 -15.10363 -14.52995 -14.40805 -14.24676 -14.15073 -13.72989 -13.62690 -13.20964 -12.96665 -12.88798 -12.75907 -12.67308 -12.59129 -12.46466 -12.19505 -12.02772 -11.88406 -11.73185 -11.64701 -11.42089 -11.16906 -11.08649 -10.77047 -10.61183 -10.53696 -10.42976 -10.36245 -9.91688 -9.81242 -9.24091 -9.19941 -8.89300 -8.58999 -7.55230 -6.05788 -4.04597 2.18435 2.32591 2.70129 2.92575 3.26795 3.34053 3.34935 3.69384 4.20139 4.40012 4.45202 4.60923 4.69303 4.72785 4.81434 4.85178 4.86629 4.89608 5.00101 5.18624 5.19841 5.25510 5.30858 5.36958 5.40596 5.48479 5.50341 5.59435 5.63702 5.64631 5.79008 5.79940 5.84959 5.97042 6.04077 6.13118 6.20320 6.29262 6.46794 6.48391 6.71238 6.88570 7.00660 7.30610 7.44785 7.81008 7.82742 7.86275 8.10362 8.60021 9.00882 9.54440 11.07120 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.009891 B = 0.004281 C = 0.003336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2830.249982 B = 6539.001643 C = 8390.230888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.061 3.939 3 O -0.361 6.361 4 C 0.448 3.552 5 O -0.474 6.474 6 C 0.158 3.842 7 H 0.122 0.878 8 C -0.164 4.164 9 N -0.595 5.595 10 C 0.100 3.900 11 C 0.092 3.908 12 C -0.108 4.108 13 C 0.032 3.968 14 N -0.500 5.500 15 C 0.155 3.845 16 C -0.515 4.515 17 H 0.079 0.921 18 C 0.070 3.930 19 N -0.897 5.897 20 Si 0.876 3.124 21 H -0.275 1.275 22 H -0.286 1.286 23 H -0.269 1.269 24 C 0.035 3.965 25 O -0.345 6.345 26 C 0.050 3.950 27 C 0.506 3.494 28 O -0.532 6.532 29 H 0.065 0.935 30 H 0.079 0.921 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.070 0.930 36 H 0.088 0.912 37 H 0.086 0.914 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.086 0.914 41 H 0.039 0.961 42 H 0.076 0.924 43 H -0.012 1.012 44 H 0.029 0.971 45 H 0.264 0.736 46 H 0.090 0.910 47 H 0.050 0.950 48 H 0.105 0.895 49 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.540 17.772 -3.602 21.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.012 4.012 3 O -0.279 6.279 4 C 0.287 3.713 5 O -0.357 6.357 6 C 0.053 3.947 7 H 0.140 0.860 8 C -0.222 4.222 9 N -0.330 5.330 10 C -0.023 4.023 11 C 0.051 3.949 12 C -0.147 4.147 13 C -0.096 4.096 14 N -0.224 5.224 15 C 0.028 3.972 16 C -0.553 4.553 17 H 0.097 0.903 18 C -0.132 4.132 19 N -0.535 5.535 20 Si 0.703 3.297 21 H -0.200 1.200 22 H -0.212 1.212 23 H -0.194 1.194 24 C -0.093 4.093 25 O -0.263 6.263 26 C -0.029 4.029 27 C 0.295 3.705 28 O -0.408 6.408 29 H 0.084 0.916 30 H 0.098 0.902 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.095 0.905 35 H 0.089 0.911 36 H 0.107 0.893 37 H 0.104 0.896 38 H 0.097 0.903 39 H 0.098 0.902 40 H 0.105 0.895 41 H 0.058 0.942 42 H 0.094 0.906 43 H 0.005 0.995 44 H 0.047 0.953 45 H 0.074 0.926 46 H 0.108 0.892 47 H 0.068 0.932 48 H 0.123 0.877 49 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -11.134 16.961 -4.495 20.781 hybrid contribution -0.417 -0.497 1.906 2.014 sum -11.551 16.463 -2.589 20.277 Atomic orbital electron populations 1.21792 0.92684 1.02951 1.03235 1.23025 0.95079 0.80123 1.03017 1.86419 1.24274 1.32575 1.84611 1.23841 0.80974 0.92920 0.73573 1.90774 1.60067 1.42335 1.42545 1.20504 0.80996 0.90463 1.02756 0.85986 1.22176 1.02073 1.00295 0.97613 1.47397 1.04543 1.57498 1.23526 1.22136 0.92359 0.98112 0.89693 1.22211 0.90390 0.97362 0.84936 1.22278 0.98166 0.98122 0.96100 1.22929 1.00006 0.90199 0.96513 1.64766 1.21727 1.02389 1.33481 1.20348 0.96194 0.90868 0.89755 1.21016 1.42581 0.89538 1.02154 0.90323 1.24907 0.95008 0.95399 0.97865 1.69905 1.47746 0.98548 1.37318 0.86850 0.79587 0.77863 0.85367 1.20019 1.21229 1.19388 1.23519 0.91806 0.93895 1.00130 1.88015 1.56887 1.62277 1.19122 1.22838 0.86526 0.97847 0.95711 1.21019 0.92065 0.76223 0.81171 1.90652 1.65508 1.47729 1.36932 0.91594 0.90247 0.91599 0.91122 0.91076 0.90489 0.91111 0.89348 0.89611 0.90255 0.90207 0.89509 0.94226 0.90559 0.99474 0.95311 0.92639 0.89177 0.93184 0.87739 0.85360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 10.29 37.16 0.38 -0.87 16 2 C 0.06 0.74 6.19 37.16 0.23 0.97 16 3 O -0.36 -4.82 10.12 -39.25 -0.40 -5.21 16 4 C 0.45 6.92 6.57 36.01 0.24 7.16 16 5 O -0.47 -9.51 14.36 -25.53 -0.37 -9.87 16 6 C 0.16 1.90 3.17 -69.08 -0.22 1.68 16 7 H 0.12 1.03 7.87 -51.93 -0.41 0.62 16 8 C -0.16 -1.69 9.03 37.16 0.34 -1.36 16 9 N -0.59 -8.15 2.60 -168.57 -0.44 -8.59 16 10 C 0.10 1.16 5.14 -4.61 -0.02 1.14 16 11 C 0.09 1.33 0.92 -89.93 -0.08 1.25 16 12 C -0.11 -1.34 6.26 -25.67 -0.16 -1.50 16 13 C 0.03 0.51 6.71 -2.64 -0.02 0.49 16 14 N -0.50 -10.41 5.35 -232.09 -1.24 -11.65 16 15 C 0.15 3.77 3.66 -4.98 -0.02 3.75 16 16 C -0.51 -14.87 9.24 -34.44 -0.32 -15.19 16 17 H 0.08 2.50 6.97 -52.48 -0.37 2.13 16 18 C 0.07 2.06 5.47 -17.82 -0.10 1.97 16 19 N -0.90 -28.00 13.96 55.43 0.77 -27.23 16 20 Si 0.88 21.66 27.37 -169.99 -4.65 17.01 16 21 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 23 H -0.27 -6.36 6.69 56.52 0.38 -5.98 16 24 C 0.03 0.67 4.44 -2.20 -0.01 0.66 16 25 O -0.34 -5.33 10.39 -35.23 -0.37 -5.69 16 26 C 0.05 0.78 6.35 35.80 0.23 1.00 16 27 C 0.51 8.27 6.05 -11.60 -0.07 8.20 16 28 O -0.53 -9.95 13.14 -14.61 -0.19 -10.14 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.92 8.13 -51.93 -0.42 0.50 16 33 H 0.07 0.92 8.13 -51.93 -0.42 0.49 16 34 H 0.08 0.66 8.11 -51.93 -0.42 0.24 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.09 1.18 5.92 -51.93 -0.31 0.87 16 37 H 0.09 0.89 7.84 -51.93 -0.41 0.49 16 38 H 0.08 0.70 8.13 -51.92 -0.42 0.27 16 39 H 0.08 0.76 7.83 -51.93 -0.41 0.36 16 40 H 0.09 0.97 8.07 -51.93 -0.42 0.55 16 41 H 0.04 0.61 7.67 -51.93 -0.40 0.21 16 42 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 43 H -0.01 -0.30 7.37 -51.93 -0.38 -0.68 16 44 H 0.03 0.70 7.30 -51.93 -0.38 0.32 16 45 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 46 H 0.09 2.02 5.02 -51.92 -0.26 1.75 16 47 H 0.05 1.00 7.70 -51.93 -0.40 0.60 16 48 H 0.10 1.87 6.58 -51.93 -0.34 1.53 16 49 H 0.13 1.68 8.14 -51.93 -0.42 1.26 16 LS Contribution 383.48 15.07 5.78 5.78 Total: -1.00 -36.44 383.48 -8.57 -45.01 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -7.86 Total: 1.23 kcal Atomic # 6 Polarization: 8.97 SS G_CDS: 0.39 Total: 9.36 kcal Atomic # 7 Polarization: -46.56 SS G_CDS: -0.91 Total: -47.47 kcal Atomic # 8 Polarization: -29.60 SS G_CDS: -1.32 Total: -30.92 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.65 Total: 17.01 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -36.44 -8.57 -45.01 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274030454.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.382 kcal (2) G-P(sol) polarization free energy of solvation -36.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds