Wall clock time and date at job start Tue Mar 31 2020 23:29:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45201 * 109.47304 * 2 1 4 4 C 1.34224 * 116.99932 * 180.02562 * 3 2 1 5 5 O 1.20830 * 120.00160 * 0.02562 * 4 3 2 6 6 C 1.50695 * 120.00251 * 179.97438 * 4 3 2 7 7 H 1.09001 * 109.46874 * 59.99527 * 6 4 3 8 8 C 1.53003 * 109.47292 * 300.00185 * 6 4 3 9 9 N 1.46501 * 109.47833 * 180.02562 * 6 4 3 10 10 C 1.46290 * 118.72894 * 240.00453 * 9 6 4 11 11 C 1.52454 * 109.55955 * 164.01546 * 10 9 6 12 12 C 1.52889 * 114.26316 * 272.38657 * 11 10 9 13 13 N 1.47594 * 87.78308 * 220.28477 * 12 11 10 14 14 C 1.46896 * 110.99966 * 138.23453 * 13 12 11 15 15 C 1.52996 * 109.47256 * 170.00148 * 14 13 12 16 16 C 1.50702 * 109.47159 * 180.02562 * 15 14 13 17 17 H 1.08002 * 120.00299 * 0.02562 * 16 15 14 18 18 C 1.37884 * 119.99942 * 179.72211 * 16 15 14 19 19 N 1.31514 * 119.99698 * 0.28408 * 18 16 15 20 20 Si 1.86794 * 119.99837 * 180.27476 * 18 16 15 21 21 H 1.48496 * 109.47341 * 0.02562 * 20 18 16 22 22 H 1.48508 * 109.46983 * 120.00379 * 20 18 16 23 23 H 1.48503 * 109.47491 * 240.00192 * 20 18 16 24 24 C 1.47599 * 87.95103 * 26.49806 * 13 12 11 25 25 O 1.42571 * 112.70892 * 44.99687 * 11 10 9 26 26 C 1.43063 * 112.97313 * 296.16735 * 25 11 10 27 27 C 1.33716 * 118.72097 * 59.99692 * 9 6 4 28 28 O 1.21281 * 118.36246 * 3.33093 * 27 9 6 29 29 H 1.09007 * 109.46536 * 300.00394 * 1 2 3 30 30 H 1.08998 * 109.46946 * 59.99861 * 1 2 3 31 31 H 1.09001 * 109.47425 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46938 * 239.99370 * 2 1 3 33 33 H 1.08998 * 109.46946 * 120.00139 * 2 1 3 34 34 H 1.09005 * 109.46874 * 59.99827 * 8 6 4 35 35 H 1.08998 * 109.47756 * 179.97438 * 8 6 4 36 36 H 1.09001 * 109.46891 * 300.00231 * 8 6 4 37 37 H 1.08997 * 109.44918 * 43.99779 * 10 9 6 38 38 H 1.09001 * 109.47231 * 284.04571 * 10 9 6 39 39 H 1.09004 * 113.50172 * 105.56321 * 12 11 10 40 40 H 1.08994 * 113.50064 * 335.01550 * 12 11 10 41 41 H 1.09004 * 109.46774 * 50.00347 * 14 13 12 42 42 H 1.09000 * 109.47723 * 290.00735 * 14 13 12 43 43 H 1.09004 * 109.47066 * 60.00378 * 15 14 13 44 44 H 1.08994 * 109.47405 * 300.00209 * 15 14 13 45 45 H 0.97005 * 119.99651 * 179.97438 * 19 18 16 46 46 H 1.09003 * 113.49644 * 88.22696 * 24 13 12 47 47 H 1.08995 * 113.49808 * 218.76337 * 24 13 12 48 48 H 1.08998 * 109.35067 * 167.37378 * 26 25 11 49 49 H 1.09007 * 109.34082 * 287.06565 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0808 0.5865 -0.0015 6 6 3.9209 2.9372 -0.0012 7 1 3.5852 3.4697 0.8888 8 6 3.4489 3.6839 -1.2504 9 7 5.3839 2.8606 -0.0023 10 6 6.1205 3.4644 1.1081 11 6 7.5513 2.9382 1.1175 12 6 7.7382 1.6406 1.9042 13 7 9.0077 2.1977 2.4105 14 6 9.1760 1.9088 3.8409 15 6 10.5974 2.2760 4.2716 16 6 10.7702 1.9790 5.7390 17 1 9.9486 1.5689 6.3074 18 6 11.9793 2.2250 6.3544 19 7 12.9800 2.7240 5.6621 20 14 12.1959 1.8496 8.1714 21 1 10.9296 1.2988 8.7174 22 1 13.2838 0.8538 8.3449 23 1 12.5467 3.0973 8.8963 24 6 8.4371 3.5436 2.2063 25 8 8.1420 2.9266 -0.1800 26 6 7.4805 2.0397 -1.0869 27 6 5.9941 2.2413 -1.0182 28 8 5.3130 1.8212 -1.9295 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 2.3603 3.7410 -1.2500 35 1 3.8652 4.6913 -1.2507 36 1 3.7844 3.1515 -2.1404 37 1 5.6332 3.2082 2.0488 38 1 6.1330 4.5479 0.9893 39 1 7.8706 0.7634 1.2707 40 1 6.9884 1.4914 2.6811 41 1 9.0050 0.8472 4.0197 42 1 8.4592 2.4942 4.4168 43 1 10.7684 3.3376 4.0929 44 1 11.3142 1.6906 3.6960 45 1 13.8305 2.8973 6.0952 46 1 7.8779 3.9135 3.0658 47 1 9.1577 4.2682 1.8274 48 1 7.8254 2.2376 -2.1017 49 1 7.7157 1.0092 -0.8201 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274039160.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:29:23 Heat of formation + Delta-G solvation = -108.170392 kcal Electronic energy + Delta-G solvation = -30887.002519 eV Core-core repulsion = 26623.516546 eV Total energy + Delta-G solvation = -4263.485973 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.78988 -40.69152 -39.49039 -37.02059 -36.74095 -35.93507 -33.45762 -32.64388 -31.67458 -31.03457 -28.96250 -27.34402 -25.92754 -25.75179 -25.45491 -23.72920 -23.10289 -21.84703 -20.52217 -20.15651 -18.72609 -18.23613 -17.45646 -17.26682 -16.82822 -16.44579 -16.37733 -15.98633 -15.67512 -15.12884 -14.88236 -14.57899 -14.50384 -14.27040 -14.11438 -13.95357 -13.61569 -13.32891 -13.15043 -12.94917 -12.74519 -12.65913 -12.54563 -12.26576 -12.18850 -11.95948 -11.91757 -11.84895 -11.60244 -11.14547 -10.94013 -10.89729 -10.84580 -10.63051 -10.49155 -10.17699 -9.86025 -9.55625 -9.43042 -9.21947 -9.07707 -8.43033 -8.34563 -6.00889 -4.04097 1.88697 2.00424 2.39338 2.65151 3.29543 3.30690 3.37121 3.40442 3.94482 4.16243 4.17945 4.32716 4.44411 4.51365 4.52252 4.54777 4.60497 4.62085 4.90473 4.94680 4.98759 5.10982 5.20409 5.26748 5.28352 5.34842 5.38484 5.39222 5.40126 5.40816 5.55841 5.56782 5.67850 5.78206 5.79931 5.97450 6.03284 6.15134 6.21425 6.70423 6.71781 6.97728 7.04470 7.32494 7.47874 7.71740 7.80973 7.85737 8.05209 8.39649 9.03501 9.59757 11.10298 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.016842 B = 0.002354 C = 0.002168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.124994 B =11891.609896 C =12910.920563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.063 3.937 3 O -0.358 6.358 4 C 0.455 3.545 5 O -0.487 6.487 6 C 0.156 3.844 7 H 0.126 0.874 8 C -0.166 4.166 9 N -0.594 5.594 10 C 0.103 3.897 11 C 0.065 3.935 12 C -0.022 4.022 13 N -0.455 5.455 14 C 0.026 3.974 15 C 0.033 3.967 16 C -0.524 4.524 17 H 0.054 0.946 18 C 0.058 3.942 19 N -0.891 5.891 20 Si 0.892 3.108 21 H -0.274 1.274 22 H -0.284 1.284 23 H -0.284 1.284 24 C 0.028 3.972 25 O -0.326 6.326 26 C 0.052 3.948 27 C 0.504 3.496 28 O -0.533 6.533 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.079 0.921 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.075 0.925 41 H 0.061 0.939 42 H 0.034 0.966 43 H 0.017 0.983 44 H 0.025 0.975 45 H 0.260 0.740 46 H 0.086 0.914 47 H 0.099 0.901 48 H 0.132 0.868 49 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.652 1.875 -13.537 28.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.011 4.011 3 O -0.275 6.275 4 C 0.295 3.705 5 O -0.373 6.373 6 C 0.051 3.949 7 H 0.143 0.857 8 C -0.223 4.223 9 N -0.328 5.328 10 C -0.020 4.020 11 C 0.024 3.976 12 C -0.152 4.152 13 N -0.177 5.177 14 C -0.101 4.101 15 C -0.004 4.004 16 C -0.563 4.563 17 H 0.072 0.928 18 C -0.144 4.144 19 N -0.530 5.530 20 Si 0.720 3.280 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.210 1.210 24 C -0.102 4.102 25 O -0.244 6.244 26 C -0.027 4.027 27 C 0.293 3.707 28 O -0.410 6.410 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.098 0.902 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.096 0.904 35 H 0.091 0.909 36 H 0.107 0.893 37 H 0.107 0.893 38 H 0.105 0.895 39 H 0.104 0.896 40 H 0.093 0.907 41 H 0.080 0.920 42 H 0.052 0.948 43 H 0.035 0.965 44 H 0.043 0.957 45 H 0.070 0.930 46 H 0.104 0.896 47 H 0.118 0.882 48 H 0.150 0.850 49 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -23.764 1.274 -14.321 27.775 hybrid contribution -0.673 -0.450 1.755 1.933 sum -24.437 0.823 -12.566 27.491 Atomic orbital electron populations 1.21805 0.92488 1.03047 1.03503 1.23030 0.95318 0.80048 1.02720 1.86453 1.24136 1.32611 1.84304 1.23856 0.80911 0.92853 0.72844 1.90683 1.60291 1.42615 1.43668 1.20550 0.80879 0.90349 1.03126 0.85667 1.22200 1.02200 1.00503 0.97426 1.47399 1.04640 1.57220 1.23571 1.22152 0.91394 0.98917 0.89546 1.22568 0.90975 0.98751 0.85286 1.24338 0.94247 0.97840 0.98751 1.69140 1.25872 1.03478 1.19255 1.22939 1.01875 1.00180 0.85109 1.18965 0.89025 0.97129 0.95322 1.21225 0.97550 1.42719 0.94775 0.92813 1.25007 0.96011 0.95257 0.98081 1.69990 1.02858 1.44253 1.35883 0.86545 0.78096 0.77988 0.85392 1.19830 1.20977 1.21002 1.23829 0.96319 0.95705 0.94329 1.88163 1.54032 1.63040 1.19130 1.22764 0.86520 0.96867 0.96532 1.20927 0.91982 0.76481 0.81277 1.90663 1.65054 1.48547 1.36743 0.91451 0.91432 0.90183 0.91170 0.91261 0.90394 0.90870 0.89280 0.89292 0.89545 0.89615 0.90738 0.92046 0.94792 0.96486 0.95705 0.93010 0.89611 0.88237 0.84988 0.88771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 10.29 37.16 0.38 -0.45 16 2 C 0.06 0.53 6.19 37.16 0.23 0.76 16 3 O -0.36 -3.62 10.12 -39.24 -0.40 -4.02 16 4 C 0.46 5.38 6.56 36.00 0.24 5.62 16 5 O -0.49 -7.42 14.37 -25.51 -0.37 -7.79 16 6 C 0.16 1.44 3.17 -69.08 -0.22 1.22 16 7 H 0.13 0.75 7.88 -51.93 -0.41 0.34 16 8 C -0.17 -1.36 9.02 37.16 0.34 -1.03 16 9 N -0.59 -6.38 2.62 -168.46 -0.44 -6.82 16 10 C 0.10 0.96 5.80 -4.44 -0.03 0.93 16 11 C 0.07 0.81 1.22 -91.03 -0.11 0.70 16 12 C -0.02 -0.32 6.86 -7.27 -0.05 -0.37 16 13 N -0.46 -8.07 6.33 -244.69 -1.55 -9.62 16 14 C 0.03 0.54 4.75 -3.83 -0.02 0.52 16 15 C 0.03 0.86 5.30 -27.88 -0.15 0.71 16 16 C -0.52 -14.70 9.11 -34.44 -0.31 -15.02 16 17 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 18 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 19 N -0.89 -26.81 13.29 55.43 0.74 -26.08 16 20 Si 0.89 21.51 29.54 -169.99 -5.02 16.48 16 21 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 22 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 24 C 0.03 0.39 7.15 -7.28 -0.05 0.34 16 25 O -0.33 -4.41 10.68 -35.23 -0.38 -4.78 16 26 C 0.05 0.63 6.69 35.75 0.24 0.87 16 27 C 0.50 6.53 6.24 -11.72 -0.07 6.46 16 28 O -0.53 -8.16 13.08 -14.51 -0.19 -8.35 16 29 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.07 0.64 8.13 -51.93 -0.42 0.22 16 33 H 0.07 0.59 8.13 -51.93 -0.42 0.17 16 34 H 0.08 0.52 8.11 -51.93 -0.42 0.10 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.09 0.99 5.87 -51.93 -0.30 0.68 16 37 H 0.09 0.69 7.86 -51.93 -0.41 0.28 16 38 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.09 1.27 7.10 -51.93 -0.37 0.90 16 40 H 0.07 0.98 7.67 -51.93 -0.40 0.58 16 41 H 0.06 1.26 8.08 -51.93 -0.42 0.84 16 42 H 0.03 0.65 7.30 -51.93 -0.38 0.27 16 43 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 46 H 0.09 1.07 7.38 -51.93 -0.38 0.68 16 47 H 0.10 1.47 8.14 -51.93 -0.42 1.04 16 48 H 0.13 1.33 8.14 -51.93 -0.42 0.91 16 49 H 0.09 1.13 7.24 -51.92 -0.38 0.76 16 LS Contribution 395.25 15.07 5.96 5.96 Total: -1.00 -35.35 395.25 -9.39 -44.74 By element: Atomic # 1 Polarization: 5.49 SS G_CDS: -8.06 Total: -2.57 kcal Atomic # 6 Polarization: 2.52 SS G_CDS: 0.32 Total: 2.84 kcal Atomic # 7 Polarization: -41.27 SS G_CDS: -1.25 Total: -42.52 kcal Atomic # 8 Polarization: -23.60 SS G_CDS: -1.33 Total: -24.93 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -35.35 -9.39 -44.74 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274039160.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.427 kcal (2) G-P(sol) polarization free energy of solvation -35.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds