Wall clock time and date at job start Tue Mar 31 2020 23:29:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45201 * 109.47304 * 2 1 4 4 C 1.34224 * 116.99932 * 180.02562 * 3 2 1 5 5 O 1.20830 * 120.00160 * 0.02562 * 4 3 2 6 6 C 1.50695 * 120.00251 * 179.97438 * 4 3 2 7 7 H 1.09001 * 109.46874 * 59.99527 * 6 4 3 8 8 C 1.53003 * 109.47292 * 300.00185 * 6 4 3 9 9 N 1.46501 * 109.47833 * 180.02562 * 6 4 3 10 10 C 1.46290 * 118.72894 * 240.00453 * 9 6 4 11 11 C 1.52454 * 109.55955 * 164.01546 * 10 9 6 12 12 C 1.52889 * 114.26316 * 272.38657 * 11 10 9 13 13 N 1.47594 * 87.78308 * 220.28477 * 12 11 10 14 14 C 1.46896 * 110.99966 * 138.23453 * 13 12 11 15 15 C 1.52996 * 109.47256 * 170.00148 * 14 13 12 16 16 C 1.50702 * 109.47159 * 180.02562 * 15 14 13 17 17 H 1.08002 * 120.00299 * 0.02562 * 16 15 14 18 18 C 1.37884 * 119.99942 * 179.72211 * 16 15 14 19 19 N 1.31514 * 119.99698 * 0.28408 * 18 16 15 20 20 Si 1.86794 * 119.99837 * 180.27476 * 18 16 15 21 21 H 1.48496 * 109.47341 * 0.02562 * 20 18 16 22 22 H 1.48508 * 109.46983 * 120.00379 * 20 18 16 23 23 H 1.48503 * 109.47491 * 240.00192 * 20 18 16 24 24 C 1.47599 * 87.95103 * 26.49806 * 13 12 11 25 25 O 1.42571 * 112.70892 * 44.99687 * 11 10 9 26 26 C 1.43063 * 112.97313 * 296.16735 * 25 11 10 27 27 C 1.33716 * 118.72097 * 59.99692 * 9 6 4 28 28 O 1.21281 * 118.36246 * 3.33093 * 27 9 6 29 29 H 1.09007 * 109.46536 * 300.00394 * 1 2 3 30 30 H 1.08998 * 109.46946 * 59.99861 * 1 2 3 31 31 H 1.09001 * 109.47425 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46938 * 239.99370 * 2 1 3 33 33 H 1.08998 * 109.46946 * 120.00139 * 2 1 3 34 34 H 1.09005 * 109.46874 * 59.99827 * 8 6 4 35 35 H 1.08998 * 109.47756 * 179.97438 * 8 6 4 36 36 H 1.09001 * 109.46891 * 300.00231 * 8 6 4 37 37 H 1.08997 * 109.44918 * 43.99779 * 10 9 6 38 38 H 1.09001 * 109.47231 * 284.04571 * 10 9 6 39 39 H 1.09004 * 113.50172 * 105.56321 * 12 11 10 40 40 H 1.08994 * 113.50064 * 335.01550 * 12 11 10 41 41 H 1.09004 * 109.46774 * 50.00347 * 14 13 12 42 42 H 1.09000 * 109.47723 * 290.00735 * 14 13 12 43 43 H 1.09004 * 109.47066 * 60.00378 * 15 14 13 44 44 H 1.08994 * 109.47405 * 300.00209 * 15 14 13 45 45 H 0.97005 * 119.99651 * 179.97438 * 19 18 16 46 46 H 1.09003 * 113.49644 * 88.22696 * 24 13 12 47 47 H 1.08995 * 113.49808 * 218.76337 * 24 13 12 48 48 H 1.08998 * 109.35067 * 167.37378 * 26 25 11 49 49 H 1.09007 * 109.34082 * 287.06565 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0808 0.5865 -0.0015 6 6 3.9209 2.9372 -0.0012 7 1 3.5852 3.4697 0.8888 8 6 3.4489 3.6839 -1.2504 9 7 5.3839 2.8606 -0.0023 10 6 6.1205 3.4644 1.1081 11 6 7.5513 2.9382 1.1175 12 6 7.7382 1.6406 1.9042 13 7 9.0077 2.1977 2.4105 14 6 9.1760 1.9088 3.8409 15 6 10.5974 2.2760 4.2716 16 6 10.7702 1.9790 5.7390 17 1 9.9486 1.5689 6.3074 18 6 11.9793 2.2250 6.3544 19 7 12.9800 2.7240 5.6621 20 14 12.1959 1.8496 8.1714 21 1 10.9296 1.2988 8.7174 22 1 13.2838 0.8538 8.3449 23 1 12.5467 3.0973 8.8963 24 6 8.4371 3.5436 2.2063 25 8 8.1420 2.9266 -0.1800 26 6 7.4805 2.0397 -1.0869 27 6 5.9941 2.2413 -1.0182 28 8 5.3130 1.8212 -1.9295 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 2.3603 3.7410 -1.2500 35 1 3.8652 4.6913 -1.2507 36 1 3.7844 3.1515 -2.1404 37 1 5.6332 3.2082 2.0488 38 1 6.1330 4.5479 0.9893 39 1 7.8706 0.7634 1.2707 40 1 6.9884 1.4914 2.6811 41 1 9.0050 0.8472 4.0197 42 1 8.4592 2.4942 4.4168 43 1 10.7684 3.3376 4.0929 44 1 11.3142 1.6906 3.6960 45 1 13.8305 2.8973 6.0952 46 1 7.8779 3.9135 3.0658 47 1 9.1577 4.2682 1.8274 48 1 7.8254 2.2376 -2.1017 49 1 7.7157 1.0092 -0.8201 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274039160.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:29:22 Heat of formation + Delta-G solvation = -133.664348 kcal Electronic energy + Delta-G solvation = -30888.108020 eV Core-core repulsion = 26623.516546 eV Total energy + Delta-G solvation = -4264.591474 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.74277 -41.66139 -40.49378 -38.04093 -37.72781 -36.82395 -35.45875 -33.46652 -32.84894 -32.12469 -30.27162 -28.39112 -27.21709 -27.05103 -26.18304 -24.98697 -24.09606 -22.90017 -21.96215 -21.24941 -19.68678 -19.14464 -18.55574 -18.32766 -18.15444 -17.66312 -17.26026 -16.95485 -16.74722 -16.55483 -16.19218 -15.91502 -15.53532 -15.30229 -15.15721 -14.84189 -14.58572 -14.47995 -14.22673 -13.93142 -13.65175 -13.59444 -13.46342 -13.37768 -13.26610 -13.17418 -12.93835 -12.83173 -12.78139 -12.56304 -12.53368 -12.37364 -11.92106 -11.71326 -11.57570 -11.53417 -11.39082 -11.26426 -11.07184 -10.55831 -10.46401 -10.05877 -9.71817 -8.19270 -6.31264 1.04646 1.16612 1.40684 1.41587 1.51701 1.54415 1.85313 2.31753 2.40748 2.94588 3.14113 3.17062 3.21882 3.52043 3.58344 3.87900 3.90591 3.96531 4.02366 4.05003 4.11500 4.17043 4.27089 4.29480 4.30613 4.38873 4.50189 4.56151 4.60520 4.62528 4.68703 4.71953 4.80352 4.82892 4.89729 5.05974 5.09356 5.13512 5.28427 5.33408 5.40946 5.47313 5.71805 5.76158 5.81612 6.10106 6.14115 6.27806 6.62639 6.86810 6.89296 7.38247 8.93008 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.016842 B = 0.002354 C = 0.002168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.124994 B =11891.609896 C =12910.920563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.055 3.945 3 O -0.354 6.354 4 C 0.452 3.548 5 O -0.530 6.530 6 C 0.152 3.848 7 H 0.169 0.831 8 C -0.158 4.158 9 N -0.591 5.591 10 C 0.105 3.895 11 C 0.077 3.923 12 C -0.020 4.020 13 N -0.492 5.492 14 C 0.045 3.955 15 C 0.040 3.960 16 C -0.542 4.542 17 H 0.063 0.937 18 C -0.002 4.002 19 N -0.932 5.932 20 Si 0.968 3.032 21 H -0.260 1.260 22 H -0.281 1.281 23 H -0.276 1.276 24 C 0.027 3.973 25 O -0.343 6.343 26 C 0.053 3.947 27 C 0.500 3.500 28 O -0.563 6.563 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.096 0.904 32 H 0.056 0.944 33 H 0.065 0.935 34 H 0.094 0.906 35 H 0.091 0.909 36 H 0.056 0.944 37 H 0.115 0.885 38 H 0.117 0.883 39 H 0.074 0.926 40 H 0.092 0.908 41 H 0.056 0.944 42 H 0.052 0.948 43 H -0.007 1.007 44 H -0.016 1.016 45 H 0.263 0.737 46 H 0.112 0.888 47 H 0.088 0.912 48 H 0.146 0.854 49 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.347 2.985 -12.070 30.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.018 4.018 3 O -0.270 6.270 4 C 0.294 3.706 5 O -0.418 6.418 6 C 0.048 3.952 7 H 0.186 0.814 8 C -0.216 4.216 9 N -0.324 5.324 10 C -0.017 4.017 11 C 0.036 3.964 12 C -0.149 4.149 13 N -0.214 5.214 14 C -0.083 4.083 15 C 0.002 3.998 16 C -0.580 4.580 17 H 0.081 0.919 18 C -0.200 4.200 19 N -0.572 5.572 20 Si 0.792 3.208 21 H -0.184 1.184 22 H -0.207 1.207 23 H -0.202 1.202 24 C -0.102 4.102 25 O -0.261 6.261 26 C -0.026 4.026 27 C 0.289 3.711 28 O -0.443 6.443 29 H 0.093 0.907 30 H 0.089 0.911 31 H 0.115 0.885 32 H 0.075 0.925 33 H 0.084 0.916 34 H 0.113 0.887 35 H 0.109 0.891 36 H 0.075 0.925 37 H 0.133 0.867 38 H 0.135 0.865 39 H 0.092 0.908 40 H 0.110 0.890 41 H 0.074 0.926 42 H 0.070 0.930 43 H 0.011 0.989 44 H 0.002 0.998 45 H 0.072 0.928 46 H 0.129 0.871 47 H 0.106 0.894 48 H 0.164 0.836 49 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -26.499 2.405 -12.844 29.546 hybrid contribution 0.171 -0.819 1.229 1.487 sum -26.327 1.586 -11.615 28.819 Atomic orbital electron populations 1.21810 0.89903 1.04335 1.03994 1.23229 0.97316 0.79357 1.01918 1.86463 1.23392 1.33411 1.83776 1.24490 0.81088 0.93532 0.71510 1.90669 1.61206 1.44157 1.45807 1.20931 0.79650 0.89186 1.05443 0.81366 1.22138 1.03320 1.00650 0.95451 1.47432 1.05576 1.56351 1.23061 1.22291 0.88903 1.00304 0.90165 1.22454 0.92654 0.96948 0.84357 1.24376 0.92905 0.98464 0.99170 1.69027 1.28835 1.06345 1.17205 1.22564 0.98394 0.99999 0.87338 1.18794 0.91852 0.94784 0.94332 1.21665 0.98022 1.42493 0.95865 0.91889 1.26009 0.95674 0.94920 1.03359 1.70135 1.03506 1.45408 1.38195 0.85365 0.78445 0.77951 0.79046 1.18353 1.20732 1.20208 1.23909 0.96565 0.93843 0.95887 1.88139 1.54933 1.63311 1.19705 1.22808 0.86504 0.96288 0.96976 1.20993 0.92023 0.76512 0.81563 1.90658 1.65591 1.49975 1.38036 0.90694 0.91114 0.88529 0.92533 0.91630 0.88678 0.89066 0.92482 0.86661 0.86510 0.90798 0.88974 0.92572 0.92955 0.98893 0.99784 0.92808 0.87070 0.89374 0.83611 0.89428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.31 10.29 71.98 0.74 -0.57 16 2 C 0.06 0.91 6.19 71.98 0.45 1.35 16 3 O -0.35 -6.65 10.12 -51.36 -0.52 -7.17 16 4 C 0.45 10.08 6.56 71.23 0.47 10.55 16 5 O -0.53 -16.09 14.37 28.41 0.41 -15.68 16 6 C 0.15 2.37 3.17 44.24 0.14 2.51 16 7 H 0.17 1.16 7.88 -2.39 -0.02 1.14 16 8 C -0.16 -2.21 9.02 71.98 0.65 -1.56 16 9 N -0.59 -11.28 2.62 -805.86 -2.11 -13.40 16 10 C 0.11 1.57 5.80 86.24 0.50 2.08 16 11 C 0.08 1.78 1.22 -11.06 -0.01 1.76 16 12 C -0.02 -0.55 6.86 83.69 0.57 0.02 16 13 N -0.49 -17.40 6.33 -928.83 -5.88 -23.28 16 14 C 0.05 1.83 4.75 86.30 0.41 2.24 16 15 C 0.04 2.14 5.30 29.85 0.16 2.29 16 16 C -0.54 -30.65 9.11 25.60 0.23 -30.41 16 17 H 0.06 3.37 7.74 -2.91 -0.02 3.34 16 18 C 0.00 -0.10 5.46 84.66 0.46 0.36 16 19 N -0.93 -57.34 13.29 21.45 0.28 -57.05 16 20 Si 0.97 43.99 29.54 68.60 2.03 46.02 16 21 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 22 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 23 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 24 C 0.03 0.73 7.15 83.68 0.60 1.32 16 25 O -0.34 -9.05 10.68 -148.98 -1.59 -10.64 16 26 C 0.05 1.27 6.69 71.07 0.48 1.75 16 27 C 0.50 12.61 6.24 87.65 0.55 13.16 16 28 O -0.56 -17.38 13.08 16.15 0.21 -17.17 16 29 H 0.07 0.59 8.14 -2.38 -0.02 0.57 16 30 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.06 1.06 8.13 -2.39 -0.02 1.04 16 33 H 0.07 1.10 8.13 -2.39 -0.02 1.08 16 34 H 0.09 0.99 8.11 -2.38 -0.02 0.97 16 35 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.06 1.22 5.87 -2.39 -0.01 1.20 16 37 H 0.12 1.20 7.86 -2.39 -0.02 1.18 16 38 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.07 2.20 7.10 -2.38 -0.02 2.18 16 40 H 0.09 2.21 7.67 -2.39 -0.02 2.20 16 41 H 0.06 2.29 8.08 -2.38 -0.02 2.27 16 42 H 0.05 1.90 7.30 -2.39 -0.02 1.88 16 43 H -0.01 -0.42 8.14 -2.38 -0.02 -0.44 16 44 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 45 H 0.26 15.14 8.31 -92.70 -0.77 14.37 16 46 H 0.11 2.43 7.38 -2.39 -0.02 2.41 16 47 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 48 H 0.15 2.97 8.14 -2.39 -0.02 2.95 16 49 H 0.09 2.19 7.24 -2.38 -0.02 2.18 16 Total: -1.00 -80.18 395.25 0.15 -80.03 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: 0.94 Total: 11.50 kcal Atomic # 6 Polarization: 0.46 SS G_CDS: 6.39 Total: 6.85 kcal Atomic # 7 Polarization: -86.02 SS G_CDS: -7.71 Total: -93.73 kcal Atomic # 8 Polarization: -49.17 SS G_CDS: -1.49 Total: -50.66 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Total: -80.18 0.15 -80.03 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274039160.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.635 kcal (2) G-P(sol) polarization free energy of solvation -80.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds