Wall clock time and date at job start Wed Apr 1 2020 00:10:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42907 * 113.99533 * 2 1 4 4 C 1.52998 * 109.46859 * 180.02562 * 3 2 1 5 5 O 1.45199 * 109.47302 * 64.99760 * 4 3 2 6 6 C 1.34640 * 116.99582 * 179.97438 * 5 4 3 7 7 O 1.21503 * 120.00610 * 0.02562 * 6 5 4 8 8 N 1.34779 * 119.99604 * 180.02562 * 6 5 4 9 9 C 1.47659 * 125.81319 * 359.95113 * 8 6 5 10 10 C 1.54983 * 104.85523 * 156.05082 * 9 8 6 11 11 C 1.55327 * 101.66555 * 36.60368 * 10 9 8 12 12 C 1.46230 * 125.81564 * 180.02562 * 8 6 5 13 13 C 1.53892 * 110.91682 * 60.09677 * 12 8 6 14 14 C 1.54635 * 101.59274 * 215.22933 * 13 12 8 15 15 N 1.46856 * 105.50114 * 24.78185 * 14 13 12 16 16 C 1.46500 * 124.36591 * 163.12825 * 15 14 13 17 17 C 1.52995 * 109.47107 * 90.00294 * 16 15 14 18 18 C 1.50702 * 109.47327 * 180.02562 * 17 16 15 19 19 H 1.07997 * 119.99969 * 359.97438 * 18 17 16 20 20 C 1.37872 * 120.00138 * 180.02562 * 18 17 16 21 21 N 1.31520 * 120.00059 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00269 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.46907 * 89.99613 * 22 20 18 24 24 H 1.48498 * 109.47278 * 209.99962 * 22 20 18 25 25 H 1.48500 * 109.46809 * 329.99980 * 22 20 18 26 26 C 1.34650 * 111.26480 * 343.13239 * 15 14 13 27 27 O 1.21281 * 125.07456 * 180.80837 * 26 15 14 28 28 H 1.09009 * 109.47018 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47358 * 299.99433 * 1 2 3 30 30 H 1.09001 * 109.47395 * 60.00010 * 1 2 3 31 31 H 1.09002 * 109.46911 * 60.00406 * 3 2 1 32 32 H 1.08997 * 109.46906 * 299.99673 * 3 2 1 33 33 H 1.09007 * 109.46958 * 304.99887 * 4 3 2 34 34 H 1.08995 * 109.47072 * 185.00585 * 4 3 2 35 35 H 1.08993 * 110.35795 * 37.20437 * 9 8 6 36 36 H 1.08998 * 110.45495 * 274.94140 * 9 8 6 37 37 H 1.08998 * 110.98398 * 278.50852 * 10 9 8 38 38 H 1.08993 * 110.98511 * 154.69983 * 10 9 8 39 39 H 1.08996 * 110.76462 * 206.79081 * 11 10 9 40 40 H 1.09002 * 110.76134 * 83.40082 * 11 10 9 41 41 H 1.08999 * 111.00505 * 97.14627 * 13 12 8 42 42 H 1.09009 * 111.00421 * 333.30329 * 13 12 8 43 43 H 1.09006 * 110.24315 * 265.77672 * 14 13 12 44 44 H 1.09001 * 110.24640 * 143.79205 * 14 13 12 45 45 H 1.09001 * 109.47208 * 210.00081 * 16 15 14 46 46 H 1.08997 * 109.47507 * 330.00052 * 16 15 14 47 47 H 1.09004 * 109.47153 * 299.99508 * 17 16 15 48 48 H 1.08997 * 109.47135 * 59.99529 * 17 16 15 49 49 H 0.97000 * 119.99935 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 6 3.5353 1.1848 -0.0006 5 8 3.9717 0.5701 -1.2416 6 6 5.2964 0.3910 -1.4021 7 8 6.0668 0.7384 -0.5291 8 7 5.7681 -0.1738 -2.5314 9 6 4.9518 -0.6424 -3.6692 10 6 5.9117 -0.6128 -4.8856 11 6 7.2528 -1.0547 -4.2383 12 6 7.1751 -0.4281 -2.8379 13 6 7.8031 -1.3695 -1.7950 14 6 9.2417 -0.8107 -1.6983 15 7 9.1454 0.5950 -2.1122 16 6 10.1705 1.6074 -1.8468 17 6 11.1708 1.6359 -3.0042 18 6 12.2257 2.6768 -2.7309 19 1 12.1864 3.2600 -1.8227 20 6 13.2404 2.8854 -3.6407 21 7 13.2880 2.1756 -4.7469 22 14 14.5477 4.1762 -3.3023 23 1 15.6755 3.5560 -2.5615 24 1 15.0439 4.7273 -4.5888 25 1 13.9628 5.2712 -2.4874 26 6 7.9932 0.8334 -2.7671 27 8 7.6638 1.9047 -3.2305 28 1 -0.3633 -1.0278 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.6885 1.8464 0.8900 32 1 1.6885 1.8464 -0.8900 33 1 3.8513 0.5684 0.8410 34 1 3.9783 2.1766 0.0890 35 1 4.1098 0.0297 -3.8340 36 1 4.5968 -1.6574 -3.4908 37 1 5.9896 0.3935 -5.2970 38 1 5.5949 -1.3221 -5.6502 39 1 8.1006 -0.6546 -4.7943 40 1 7.3105 -2.1412 -4.1725 41 1 7.8072 -2.3997 -2.1509 42 1 7.2883 -1.2908 -0.8373 43 1 9.9044 -1.3569 -2.3697 44 1 9.6043 -0.8778 -0.6726 45 1 9.6990 2.5853 -1.7499 46 1 10.6922 1.3624 -0.9217 47 1 11.6424 0.6580 -3.1010 48 1 10.6491 1.8809 -3.9293 49 1 14.0021 2.3221 -5.3868 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274288959.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:10:09 Heat of formation + Delta-G solvation = -146.175978 kcal Electronic energy + Delta-G solvation = -31074.369105 eV Core-core repulsion = 26809.235085 eV Total energy + Delta-G solvation = -4265.134019 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.35491 -39.83653 -38.26195 -37.45418 -36.11173 -35.89780 -33.62468 -32.15727 -31.74582 -30.68011 -29.07888 -27.78507 -26.73505 -25.12408 -24.54133 -23.25769 -22.38291 -21.86112 -21.52416 -20.12078 -18.93175 -17.93161 -17.29326 -17.07683 -16.53999 -16.38816 -15.94311 -15.69793 -15.61523 -15.40670 -15.14271 -14.57985 -14.37700 -13.88550 -13.77882 -13.54686 -13.31277 -13.02501 -12.92220 -12.72359 -12.63489 -12.52191 -12.42702 -11.95228 -11.93110 -11.79711 -11.61761 -11.39561 -11.27125 -11.21836 -10.92422 -10.76990 -10.72086 -10.64438 -10.43656 -10.11072 -9.96542 -9.80744 -9.63342 -9.18445 -8.55842 -8.34326 -7.93728 -5.99831 -4.02657 1.86603 2.81308 3.06848 3.32930 3.33442 3.39256 3.43283 3.56446 3.84455 4.31393 4.36073 4.47338 4.50179 4.55409 4.75908 4.78483 4.89396 4.91490 4.95645 5.00307 5.04745 5.12018 5.14442 5.29134 5.30933 5.36362 5.40880 5.49536 5.55414 5.67538 5.77481 5.79984 5.84917 5.98862 6.06598 6.13570 6.15488 6.31806 6.56331 6.70183 6.86049 7.06227 7.36993 7.55620 7.70439 7.90098 8.00442 8.26230 8.37471 8.72740 9.03874 9.61041 11.11645 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.018655 B = 0.002543 C = 0.002397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.547999 B =11007.871896 C =11678.995293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.385 6.385 3 C 0.062 3.938 4 C 0.089 3.911 5 O -0.359 6.359 6 C 0.668 3.332 7 O -0.560 6.560 8 N -0.581 5.581 9 C 0.107 3.893 10 C -0.133 4.133 11 C -0.111 4.111 12 C 0.149 3.851 13 C -0.138 4.138 14 C 0.106 3.894 15 N -0.603 5.603 16 C 0.131 3.869 17 C 0.012 3.988 18 C -0.520 4.520 19 H 0.057 0.943 20 C 0.058 3.942 21 N -0.893 5.893 22 Si 0.895 3.105 23 H -0.280 1.280 24 H -0.286 1.286 25 H -0.273 1.273 26 C 0.521 3.479 27 O -0.523 6.523 28 H 0.087 0.913 29 H 0.041 0.959 30 H 0.042 0.958 31 H 0.076 0.924 32 H 0.063 0.937 33 H 0.080 0.920 34 H 0.088 0.912 35 H 0.081 0.919 36 H 0.074 0.926 37 H 0.084 0.916 38 H 0.090 0.910 39 H 0.094 0.906 40 H 0.092 0.908 41 H 0.092 0.908 42 H 0.090 0.910 43 H 0.075 0.925 44 H 0.078 0.922 45 H 0.069 0.931 46 H 0.066 0.934 47 H 0.018 0.982 48 H 0.020 0.980 49 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.439 -11.029 5.796 27.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.304 6.304 3 C -0.014 4.014 4 C 0.014 3.986 5 O -0.274 6.274 6 C 0.423 3.577 7 O -0.448 6.448 8 N -0.321 5.321 9 C -0.015 4.015 10 C -0.171 4.171 11 C -0.149 4.149 12 C 0.061 3.939 13 C -0.177 4.177 14 C -0.018 4.018 15 N -0.336 5.336 16 C 0.011 3.989 17 C -0.026 4.026 18 C -0.559 4.559 19 H 0.075 0.925 20 C -0.143 4.143 21 N -0.532 5.532 22 Si 0.723 3.277 23 H -0.206 1.206 24 H -0.212 1.212 25 H -0.198 1.198 26 C 0.305 3.695 27 O -0.399 6.399 28 H 0.105 0.895 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.093 0.907 32 H 0.081 0.919 33 H 0.098 0.902 34 H 0.106 0.894 35 H 0.100 0.900 36 H 0.092 0.908 37 H 0.103 0.897 38 H 0.109 0.891 39 H 0.113 0.887 40 H 0.110 0.890 41 H 0.111 0.889 42 H 0.108 0.892 43 H 0.093 0.907 44 H 0.097 0.903 45 H 0.087 0.913 46 H 0.084 0.916 47 H 0.036 0.964 48 H 0.039 0.961 49 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -24.192 -10.390 5.834 26.967 hybrid contribution 0.637 0.985 0.271 1.204 sum -23.554 -9.404 6.105 26.087 Atomic orbital electron populations 1.22759 0.80825 1.02965 1.00008 1.87971 1.19831 1.27197 1.95438 1.22645 0.91411 0.85724 1.01651 1.22994 0.92565 0.98927 0.84135 1.86253 1.23006 1.76212 1.41891 1.17409 0.81166 0.77272 0.81850 1.91038 1.57186 1.54534 1.42012 1.46636 1.06594 1.62550 1.16334 1.22412 0.94390 0.99972 0.84743 1.22875 0.93954 1.03517 0.96742 1.22574 0.99663 1.00981 0.91712 1.21150 0.80121 0.95415 0.97220 1.23023 0.95830 0.98779 1.00078 1.22034 0.96098 0.82350 1.01280 1.48422 1.19542 1.10276 1.55338 1.21804 0.87809 0.89114 1.00212 1.19416 0.92734 0.97355 0.93073 1.21096 1.09306 1.19981 1.05515 0.92482 1.25000 0.98034 0.96286 0.95012 1.69975 1.33006 1.40526 1.09737 0.86545 0.81732 0.81830 0.77613 1.20634 1.21201 1.19807 1.20250 0.82177 0.88953 0.78085 1.90676 1.73490 1.27501 1.48205 0.89489 0.94046 0.93898 0.90651 0.91894 0.90210 0.89367 0.90020 0.90788 0.89692 0.89111 0.88721 0.89000 0.88936 0.89164 0.90720 0.90337 0.91268 0.91554 0.96379 0.96120 0.92985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 101.05 1.11 1.30 16 2 O -0.39 -3.76 10.67 -38.80 -0.41 -4.17 16 3 C 0.06 0.51 6.33 37.16 0.24 0.75 16 4 C 0.09 0.97 5.85 37.16 0.22 1.19 16 5 O -0.36 -5.01 9.74 -43.11 -0.42 -5.43 16 6 C 0.67 10.97 8.03 54.06 0.43 11.41 16 7 O -0.56 -10.78 14.65 -19.27 -0.28 -11.06 16 8 N -0.58 -8.54 2.90 -163.08 -0.47 -9.01 16 9 C 0.11 1.14 6.95 -2.36 -0.02 1.13 16 10 C -0.13 -1.35 7.09 -24.45 -0.17 -1.52 16 11 C -0.11 -1.30 6.08 -25.18 -0.15 -1.45 16 12 C 0.15 2.25 0.72 -132.42 -0.10 2.16 16 13 C -0.14 -1.79 6.19 -25.41 -0.16 -1.94 16 14 C 0.11 1.59 7.36 -2.99 -0.02 1.57 16 15 N -0.60 -12.07 2.94 -172.50 -0.51 -12.58 16 16 C 0.13 2.98 5.88 -4.04 -0.02 2.96 16 17 C 0.01 0.33 5.30 -27.88 -0.15 0.18 16 18 C -0.52 -15.10 9.11 -34.44 -0.31 -15.42 16 19 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 20 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 21 N -0.89 -27.25 13.29 55.43 0.74 -26.51 16 22 Si 0.90 22.09 29.54 -169.99 -5.02 17.07 16 23 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 24 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 25 H -0.27 -6.65 7.11 56.52 0.40 -6.24 16 26 C 0.52 10.70 5.89 -11.13 -0.07 10.64 16 27 O -0.52 -12.88 17.62 5.56 0.10 -12.79 16 28 H 0.09 0.44 8.14 -51.92 -0.42 0.01 16 29 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.08 0.88 8.14 -51.92 -0.42 0.46 16 34 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.08 0.84 8.06 -51.93 -0.42 0.43 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.09 1.28 7.82 -51.93 -0.41 0.87 16 40 H 0.09 0.78 7.45 -51.93 -0.39 0.39 16 41 H 0.09 0.86 7.44 -51.93 -0.39 0.47 16 42 H 0.09 1.28 6.74 -51.92 -0.35 0.93 16 43 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 45 H 0.07 1.70 7.94 -51.93 -0.41 1.29 16 46 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 47 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 48 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 49 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 403.52 15.07 6.08 6.08 Total: -1.00 -38.49 403.52 -7.71 -46.20 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: -8.24 Total: -2.34 kcal Atomic # 6 Polarization: 13.81 SS G_CDS: 0.73 Total: 14.54 kcal Atomic # 7 Polarization: -47.86 SS G_CDS: -0.24 Total: -48.10 kcal Atomic # 8 Polarization: -32.43 SS G_CDS: -1.02 Total: -33.45 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -38.49 -7.71 -46.20 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274288959.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.975 kcal (2) G-P(sol) polarization free energy of solvation -38.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds