Wall clock time and date at job start Wed Apr 1 2020 00:10:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42904 * 113.99910 * 2 1 4 4 C 1.53008 * 109.47001 * 179.97438 * 3 2 1 5 5 O 1.45202 * 109.46858 * 65.00075 * 4 3 2 6 6 C 1.34638 * 116.99776 * 179.97438 * 5 4 3 7 7 O 1.21513 * 119.99956 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99672 * 180.27362 * 6 5 4 9 9 C 1.47130 * 125.61021 * 359.42388 * 8 6 5 10 10 C 1.54599 * 107.32163 * 178.90250 * 9 8 6 11 11 C 1.53699 * 102.87024 * 339.50897 * 10 9 8 12 12 C 1.53213 * 111.54851 * 153.75438 * 11 10 9 13 13 C 1.54802 * 101.38708 * 145.81024 * 12 11 10 14 14 N 1.46923 * 105.54521 * 335.83195 * 13 12 11 15 15 C 1.46504 * 124.37496 * 196.72339 * 14 13 12 16 16 C 1.52997 * 109.47133 * 269.99583 * 15 14 13 17 17 C 1.50703 * 109.47098 * 180.02562 * 16 15 14 18 18 H 1.07996 * 119.99859 * 359.97438 * 17 16 15 19 19 C 1.37883 * 119.99974 * 180.02562 * 17 16 15 20 20 N 1.31515 * 119.99626 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99785 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.46959 * 89.99733 * 21 19 17 23 23 H 1.48502 * 109.46775 * 209.99502 * 21 19 17 24 24 H 1.48496 * 109.47219 * 329.99280 * 21 19 17 25 25 C 1.34886 * 111.24617 * 16.74317 * 14 13 12 26 26 O 1.21279 * 125.22659 * 178.73269 * 25 14 13 27 27 C 1.47705 * 125.60585 * 179.72536 * 8 6 5 28 28 H 1.09000 * 109.47160 * 59.99814 * 1 2 3 29 29 H 1.08994 * 109.47155 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46982 * 300.00315 * 1 2 3 31 31 H 1.09000 * 109.46895 * 60.00155 * 3 2 1 32 32 H 1.08996 * 109.47450 * 299.99937 * 3 2 1 33 33 H 1.08992 * 109.47034 * 305.00319 * 4 3 2 34 34 H 1.09004 * 109.46829 * 184.99721 * 4 3 2 35 35 H 1.08996 * 109.87398 * 298.48477 * 9 8 6 36 36 H 1.09000 * 109.87384 * 59.61800 * 9 8 6 37 37 H 1.09004 * 110.90463 * 221.06089 * 10 9 8 38 38 H 1.09005 * 110.66600 * 97.83990 * 10 9 8 39 39 H 1.08997 * 111.03521 * 263.83829 * 12 11 10 40 40 H 1.08997 * 111.03859 * 27.78016 * 12 11 10 41 41 H 1.09008 * 110.22675 * 216.81112 * 13 12 11 42 42 H 1.09006 * 110.30416 * 94.88913 * 13 12 11 43 43 H 1.08995 * 109.47249 * 30.00354 * 15 14 13 44 44 H 1.09006 * 109.46455 * 150.00098 * 15 14 13 45 45 H 1.08995 * 109.47683 * 300.00505 * 16 15 14 46 46 H 1.09002 * 109.47268 * 60.00434 * 16 15 14 47 47 H 0.97008 * 119.99313 * 180.02562 * 20 19 17 48 48 H 1.08999 * 110.39325 * 321.42289 * 27 8 6 49 49 H 1.09002 * 110.39319 * 83.81162 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 8 3.9727 0.5695 -1.2398 6 6 5.2976 0.3902 -1.3993 7 8 6.0673 0.7379 -0.5257 8 7 5.7703 -0.1703 -2.5302 9 6 4.9532 -0.6407 -3.6597 10 6 5.9229 -1.1792 -4.7366 11 6 7.2533 -0.5038 -4.3678 12 6 8.4539 -1.3285 -4.8430 13 6 9.4667 -0.2146 -5.2032 14 7 8.6562 0.9773 -5.4883 15 6 9.1462 2.1597 -6.2010 16 6 9.7327 3.1539 -5.1968 17 6 10.2362 4.3705 -5.9299 18 1 10.1472 4.4286 -7.0046 19 6 10.8115 5.4089 -5.2286 20 7 10.9203 5.3379 -3.9199 21 14 11.4363 6.9166 -6.1374 22 1 10.3458 7.9192 -6.2411 23 1 12.5798 7.5041 -5.3940 24 1 11.8800 6.5251 -7.4994 25 6 7.4027 0.8422 -5.0086 26 8 6.5306 1.6816 -5.0840 27 6 7.1936 -0.4190 -2.8368 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.6886 1.8464 0.8900 32 1 1.6886 1.8464 -0.8899 33 1 3.8508 0.5685 0.8426 34 1 3.9785 2.1766 0.0902 35 1 4.2855 -1.4359 -3.3281 36 1 4.3729 0.1871 -4.0673 37 1 5.6013 -0.8800 -5.7342 38 1 6.0088 -2.2638 -4.6692 39 1 8.8361 -1.9607 -4.0415 40 1 8.1977 -1.9231 -5.7199 41 1 10.0421 -0.4989 -6.0843 42 1 10.1344 -0.0242 -4.3628 43 1 9.9180 1.8622 -6.9109 44 1 8.3210 2.6288 -6.7369 45 1 8.9610 3.4514 -4.4869 46 1 10.5579 2.6849 -4.6608 47 1 11.3247 6.0687 -3.4265 48 1 7.8092 0.4057 -2.4778 49 1 7.5194 -1.3591 -2.3915 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274290470.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:10:00 Heat of formation + Delta-G solvation = -150.860799 kcal Electronic energy + Delta-G solvation = -30531.829858 eV Core-core repulsion = 26266.492690 eV Total energy + Delta-G solvation = -4265.337168 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.20308 -40.07362 -38.27175 -37.42172 -36.10261 -35.97661 -33.89956 -32.50839 -31.00651 -30.37283 -29.16420 -28.09573 -26.67443 -25.44273 -24.70489 -23.03287 -22.67745 -21.94289 -20.70800 -20.42038 -18.78951 -18.05082 -17.23259 -17.02915 -16.63401 -16.31115 -16.09133 -15.78894 -15.58291 -15.31155 -15.07681 -14.75312 -14.40979 -14.03160 -13.78753 -13.56626 -13.21859 -13.09361 -12.89089 -12.71589 -12.68637 -12.56043 -12.36913 -12.26081 -11.90975 -11.86232 -11.60177 -11.50891 -11.33152 -11.05240 -10.93675 -10.90038 -10.66945 -10.65984 -10.50183 -10.04227 -10.00073 -9.85304 -9.35977 -9.10634 -8.75267 -8.36371 -8.03736 -6.00829 -4.04874 2.02529 2.87754 2.92679 3.32469 3.37703 3.39963 3.40170 3.49614 3.83350 4.15900 4.31271 4.39591 4.46179 4.62929 4.73292 4.84116 4.90845 4.96939 5.02622 5.07083 5.08922 5.19793 5.23070 5.34652 5.35199 5.35375 5.39206 5.46879 5.56696 5.61116 5.66535 5.72313 5.78075 5.91747 5.99447 6.04919 6.10939 6.32409 6.43927 6.77047 6.80151 6.97348 7.44223 7.48299 7.66871 7.83990 7.98411 8.32414 8.33938 8.63120 9.01905 9.59160 11.10474 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.011580 B = 0.002718 C = 0.002365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2417.348944 B =10300.086829 C =11835.314657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.386 6.386 3 C 0.062 3.938 4 C 0.088 3.912 5 O -0.359 6.359 6 C 0.669 3.331 7 O -0.571 6.571 8 N -0.597 5.597 9 C 0.110 3.890 10 C -0.105 4.105 11 C -0.116 4.116 12 C -0.116 4.116 13 C 0.099 3.901 14 N -0.612 5.612 15 C 0.129 3.871 16 C 0.011 3.989 17 C -0.523 4.523 18 H 0.057 0.943 19 C 0.059 3.941 20 N -0.891 5.891 21 Si 0.895 3.105 22 H -0.280 1.280 23 H -0.286 1.286 24 H -0.273 1.273 25 C 0.528 3.472 26 O -0.519 6.519 27 C 0.153 3.847 28 H 0.043 0.957 29 H 0.086 0.914 30 H 0.041 0.959 31 H 0.075 0.925 32 H 0.064 0.936 33 H 0.079 0.921 34 H 0.089 0.911 35 H 0.072 0.928 36 H 0.077 0.923 37 H 0.089 0.911 38 H 0.087 0.913 39 H 0.093 0.907 40 H 0.089 0.911 41 H 0.079 0.921 42 H 0.074 0.926 43 H 0.066 0.934 44 H 0.070 0.930 45 H 0.020 0.980 46 H 0.017 0.983 47 H 0.261 0.739 48 H 0.088 0.912 49 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.537 -18.386 3.612 24.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.305 6.305 3 C -0.015 4.015 4 C 0.013 3.987 5 O -0.273 6.273 6 C 0.424 3.576 7 O -0.460 6.460 8 N -0.338 5.338 9 C -0.012 4.012 10 C -0.143 4.143 11 C -0.120 4.120 12 C -0.154 4.154 13 C -0.024 4.024 14 N -0.345 5.345 15 C 0.009 3.991 16 C -0.027 4.027 17 C -0.562 4.562 18 H 0.075 0.925 19 C -0.143 4.143 20 N -0.530 5.530 21 Si 0.723 3.277 22 H -0.206 1.206 23 H -0.212 1.212 24 H -0.198 1.198 25 C 0.313 3.687 26 O -0.394 6.394 27 C 0.031 3.969 28 H 0.061 0.939 29 H 0.105 0.895 30 H 0.059 0.941 31 H 0.093 0.907 32 H 0.082 0.918 33 H 0.097 0.903 34 H 0.107 0.893 35 H 0.090 0.910 36 H 0.096 0.904 37 H 0.107 0.893 38 H 0.106 0.894 39 H 0.112 0.888 40 H 0.107 0.893 41 H 0.097 0.903 42 H 0.092 0.908 43 H 0.085 0.915 44 H 0.088 0.912 45 H 0.039 0.961 46 H 0.036 0.964 47 H 0.071 0.929 48 H 0.106 0.894 49 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -15.640 -17.744 4.067 24.000 hybrid contribution 0.302 1.286 -0.271 1.348 sum -15.337 -16.458 3.796 22.815 Atomic orbital electron populations 1.22754 0.80868 1.02902 1.00028 1.87961 1.19804 1.27279 1.95445 1.22652 0.91449 0.85672 1.01704 1.22997 0.92571 0.98949 0.84145 1.86270 1.23060 1.76083 1.41837 1.17404 0.81127 0.77299 0.81792 1.91018 1.57491 1.55326 1.42187 1.46957 1.08145 1.62666 1.16040 1.22071 0.93790 0.99539 0.85840 1.22400 0.92251 1.00143 0.99523 1.21628 0.97663 0.96535 0.96203 1.22474 0.93490 0.96923 1.02504 1.22144 0.93984 0.84447 1.01853 1.48683 1.11353 1.17958 1.56473 1.21813 0.98349 0.83699 0.95227 1.19408 0.96035 0.92814 0.94414 1.21071 1.39482 1.02083 0.93558 0.92490 1.25016 0.95931 0.98532 0.94843 1.69985 1.44361 1.32531 1.06110 0.86551 0.78450 0.83041 0.79698 1.20600 1.21191 1.19814 1.19864 0.82647 0.87623 0.78556 1.90707 1.44282 1.46580 1.57862 1.21885 0.80633 1.02730 0.91667 0.93860 0.89543 0.94079 0.90678 0.91790 0.90275 0.89295 0.90966 0.90433 0.89268 0.89406 0.88812 0.89281 0.90311 0.90810 0.91530 0.91177 0.96148 0.96430 0.92900 0.89353 0.89766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.33 16 2 O -0.39 -4.09 10.67 -38.80 -0.41 -4.50 16 3 C 0.06 0.57 6.33 37.16 0.24 0.80 16 4 C 0.09 1.05 5.85 37.16 0.22 1.27 16 5 O -0.36 -5.38 9.79 -43.10 -0.42 -5.80 16 6 C 0.67 11.45 8.62 54.06 0.47 11.91 16 7 O -0.57 -11.35 16.41 -19.28 -0.32 -11.67 16 8 N -0.60 -9.02 3.34 -176.72 -0.59 -9.61 16 9 C 0.11 1.33 6.67 -2.86 -0.02 1.31 16 10 C -0.10 -1.05 5.79 -25.53 -0.15 -1.20 16 11 C -0.12 -1.46 0.68 -155.38 -0.10 -1.56 16 12 C -0.12 -1.05 6.26 -25.67 -0.16 -1.21 16 13 C 0.10 1.24 7.37 -2.86 -0.02 1.22 16 14 N -0.61 -10.82 2.95 -172.56 -0.51 -11.33 16 15 C 0.13 2.72 5.88 -4.04 -0.02 2.69 16 16 C 0.01 0.30 5.30 -27.88 -0.15 0.15 16 17 C -0.52 -14.99 9.11 -34.44 -0.31 -15.30 16 18 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 19 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 20 N -0.89 -27.53 13.29 55.43 0.74 -26.79 16 21 Si 0.89 21.98 29.54 -169.99 -5.02 16.96 16 22 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 24 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 25 C 0.53 9.56 6.77 -11.36 -0.08 9.48 16 26 O -0.52 -11.62 17.29 5.56 0.10 -11.53 16 27 C 0.15 2.10 5.89 -3.15 -0.02 2.09 16 28 H 0.04 0.27 8.14 -51.93 -0.42 -0.16 16 29 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 37 H 0.09 0.91 8.00 -51.93 -0.42 0.49 16 38 H 0.09 0.60 8.04 -51.93 -0.42 0.18 16 39 H 0.09 0.62 7.63 -51.93 -0.40 0.23 16 40 H 0.09 0.63 7.96 -51.93 -0.41 0.21 16 41 H 0.08 0.83 8.14 -51.92 -0.42 0.41 16 42 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 44 H 0.07 1.56 7.96 -51.93 -0.41 1.14 16 45 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.26 7.60 8.31 -40.82 -0.34 7.27 16 48 H 0.09 1.50 7.94 -51.93 -0.41 1.09 16 49 H 0.08 0.90 7.75 -51.93 -0.40 0.50 16 LS Contribution 406.89 15.07 6.13 6.13 Total: -1.00 -38.60 406.89 -7.74 -46.34 By element: Atomic # 1 Polarization: 5.54 SS G_CDS: -8.33 Total: -2.79 kcal Atomic # 6 Polarization: 13.69 SS G_CDS: 0.90 Total: 14.59 kcal Atomic # 7 Polarization: -47.37 SS G_CDS: -0.36 Total: -47.73 kcal Atomic # 8 Polarization: -32.45 SS G_CDS: -1.06 Total: -33.50 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -38.60 -7.74 -46.34 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274290470.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.521 kcal (2) G-P(sol) polarization free energy of solvation -38.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds