Wall clock time and date at job start Wed Apr 1 2020 00:20:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34233 * 117.00277 * 2 1 4 4 O 1.20832 * 119.99555 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00386 * 179.97438 * 3 2 1 6 6 H 1.08999 * 109.47090 * 304.99969 * 5 3 2 7 7 O 1.42897 * 109.47224 * 184.99361 * 5 3 2 8 8 C 1.53000 * 109.47191 * 64.99406 * 5 3 2 9 9 N 1.46896 * 109.47391 * 185.00202 * 8 5 3 10 10 C 1.48625 * 110.99865 * 307.45294 * 9 8 5 11 11 C 1.55164 * 103.35955 * 200.85197 * 10 9 8 12 12 C 1.53612 * 102.65806 * 36.58509 * 11 10 9 13 13 C 1.53634 * 110.82468 * 99.45566 * 12 11 10 14 14 C 1.54880 * 101.43218 * 96.68117 * 13 12 11 15 15 N 1.46880 * 105.42958 * 24.88213 * 14 13 12 16 16 C 1.46500 * 124.37410 * 163.04653 * 15 14 13 17 17 C 1.52997 * 109.47473 * 269.72824 * 16 15 14 18 18 C 1.50701 * 109.47212 * 179.97438 * 17 16 15 19 19 H 1.07998 * 120.00129 * 0.02562 * 18 17 16 20 20 C 1.37880 * 119.99861 * 179.97438 * 18 17 16 21 21 N 1.31510 * 119.99913 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99734 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47094 * 90.00289 * 22 20 18 24 24 H 1.48505 * 109.47195 * 210.00171 * 22 20 18 25 25 H 1.48493 * 109.47449 * 330.00136 * 22 20 18 26 26 C 1.34754 * 111.25553 * 342.78590 * 15 14 13 27 27 O 1.21285 * 125.13533 * 181.28276 * 26 15 14 28 28 C 1.48184 * 111.00154 * 190.00157 * 9 8 5 29 29 H 1.09005 * 109.46932 * 60.00455 * 1 2 3 30 30 H 1.09001 * 109.47423 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47513 * 300.00657 * 1 2 3 32 32 H 0.96696 * 114.00142 * 300.00047 * 7 5 3 33 33 H 1.09008 * 109.47214 * 65.00213 * 8 5 3 34 34 H 1.09004 * 109.47327 * 305.00738 * 8 5 3 35 35 H 1.09001 * 110.64152 * 319.32254 * 10 9 8 36 36 H 1.09002 * 110.64194 * 82.22425 * 10 9 8 37 37 H 1.08993 * 110.77434 * 278.29590 * 11 10 9 38 38 H 1.09000 * 110.77321 * 154.87992 * 11 10 9 39 39 H 1.08998 * 111.01883 * 214.95100 * 13 12 11 40 40 H 1.09002 * 111.02415 * 338.80589 * 13 12 11 41 41 H 1.08997 * 110.39509 * 265.84579 * 14 13 12 42 42 H 1.09000 * 110.17573 * 143.80788 * 14 13 12 43 43 H 1.09002 * 109.47129 * 149.72567 * 16 15 14 44 44 H 1.08998 * 109.46845 * 29.73374 * 16 15 14 45 45 H 1.09002 * 109.47153 * 59.99757 * 17 16 15 46 46 H 1.09001 * 109.46832 * 299.99948 * 17 16 15 47 47 H 0.97002 * 119.99768 * 179.97438 * 21 20 18 48 48 H 1.09001 * 110.02174 * 26.33676 * 28 9 8 49 49 H 1.09001 * 110.05914 * 264.95918 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9597 0.7055 0.8427 7 8 3.9717 2.6401 0.1177 8 6 4.1081 0.6924 -1.3064 9 7 5.5758 0.6590 -1.2564 10 6 6.1270 1.9921 -0.8986 11 6 7.5897 1.9248 -1.4119 12 6 7.4549 1.1093 -2.7067 13 6 7.4376 2.0327 -3.9345 14 6 8.9200 1.9786 -4.3801 15 7 9.4352 0.7015 -3.8694 16 6 10.6658 0.0593 -4.3380 17 6 10.3409 -0.8759 -5.5044 18 6 11.6069 -1.5360 -5.9868 19 1 12.5489 -1.3112 -5.5088 20 6 11.5623 -2.4276 -7.0375 21 7 10.4151 -2.7016 -7.6191 22 14 13.1314 -3.2462 -7.6349 23 1 13.3416 -4.5149 -6.8922 24 1 13.0168 -3.5359 -9.0869 25 1 14.2833 -2.3389 -7.4006 26 6 8.6328 0.1995 -2.9102 27 8 8.8318 -0.8311 -2.3025 28 6 6.1450 0.3283 -2.5839 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 3.6566 3.2069 -0.5995 33 1 3.7871 1.3144 -2.1420 34 1 3.7259 -0.3198 -1.4391 35 1 5.5773 2.7842 -1.4071 36 1 6.1025 2.1410 0.1809 37 1 8.2278 1.4086 -0.6947 38 1 7.9720 2.9237 -1.6222 39 1 6.7780 1.6412 -4.7088 40 1 7.1520 3.0473 -3.6568 41 1 9.4771 2.8097 -3.9478 42 1 8.9867 2.0042 -5.4677 43 1 11.1085 -0.5151 -3.5242 44 1 11.3703 0.8222 -4.6692 45 1 9.8982 -0.3015 -6.3182 46 1 9.6364 -1.6388 -5.1730 47 1 10.3838 -3.3286 -8.3586 48 1 5.4550 0.6308 -3.3717 49 1 6.3411 -0.7418 -2.6506 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274604059.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:20:24 Heat of formation + Delta-G solvation = -155.996871 kcal Electronic energy + Delta-G solvation = -30383.281947 eV Core-core repulsion = 26117.722061 eV Total energy + Delta-G solvation = -4265.559885 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.28008 -40.82423 -38.74397 -37.32144 -36.40845 -35.91263 -33.98956 -32.74326 -31.22969 -29.60973 -29.15653 -28.16602 -27.47422 -25.15925 -24.35067 -23.26587 -21.88817 -21.69134 -21.24515 -20.19198 -18.69400 -18.59418 -17.83403 -16.99167 -16.69420 -16.44226 -16.08329 -15.76632 -15.55081 -15.32637 -14.86049 -14.71669 -14.42191 -14.19635 -13.92277 -13.70521 -13.50378 -13.30418 -12.77597 -12.69690 -12.63994 -12.47323 -12.35977 -12.19259 -12.15183 -11.86905 -11.81073 -11.46060 -11.30141 -11.28209 -11.20235 -10.99890 -10.94562 -10.70569 -10.60535 -10.32676 -9.99232 -9.87335 -9.33018 -9.07738 -8.63594 -8.37968 -8.00416 -6.03178 -4.06526 1.60410 2.13365 2.99785 3.31576 3.37296 3.39791 3.48992 3.59841 3.81709 4.13720 4.29421 4.34351 4.41630 4.45083 4.54363 4.59434 4.65944 4.73722 4.85210 5.07121 5.08348 5.12900 5.17996 5.21920 5.33026 5.33733 5.40519 5.47569 5.68140 5.73028 5.76619 5.83118 5.89388 5.91271 6.00399 6.09900 6.11250 6.47259 6.61540 6.71760 6.80963 6.85707 7.01974 7.21275 7.50704 7.66565 7.85211 7.96817 8.33150 8.70331 9.00255 9.57548 11.08245 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.020684 B = 0.002130 C = 0.002014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.398247 B =13140.812166 C =13900.698995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.353 6.353 3 C 0.435 3.565 4 O -0.502 6.502 5 C 0.123 3.877 6 H 0.149 0.851 7 O -0.526 6.526 8 C 0.021 3.979 9 N -0.506 5.506 10 C 0.046 3.954 11 C -0.104 4.104 12 C -0.106 4.106 13 C -0.123 4.123 14 C 0.103 3.897 15 N -0.613 5.613 16 C 0.128 3.872 17 C 0.012 3.988 18 C -0.522 4.522 19 H 0.057 0.943 20 C 0.058 3.942 21 N -0.893 5.893 22 Si 0.895 3.105 23 H -0.279 1.279 24 H -0.286 1.286 25 H -0.273 1.273 26 C 0.527 3.473 27 O -0.522 6.522 28 C 0.061 3.939 29 H 0.063 0.937 30 H 0.104 0.896 31 H 0.063 0.937 32 H 0.382 0.618 33 H 0.046 0.954 34 H 0.101 0.899 35 H 0.047 0.953 36 H 0.097 0.903 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.083 0.917 40 H 0.086 0.914 41 H 0.066 0.934 42 H 0.080 0.920 43 H 0.070 0.930 44 H 0.065 0.935 45 H 0.016 0.984 46 H 0.020 0.980 47 H 0.261 0.739 48 H 0.054 0.946 49 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.156 12.992 13.294 25.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.269 6.269 3 C 0.277 3.723 4 O -0.389 6.389 5 C 0.062 3.938 6 H 0.167 0.833 7 O -0.332 6.332 8 C -0.108 4.108 9 N -0.231 5.231 10 C -0.081 4.081 11 C -0.143 4.143 12 C -0.110 4.110 13 C -0.161 4.161 14 C -0.021 4.021 15 N -0.346 5.346 16 C 0.008 3.992 17 C -0.025 4.025 18 C -0.561 4.561 19 H 0.075 0.925 20 C -0.143 4.143 21 N -0.532 5.532 22 Si 0.723 3.277 23 H -0.206 1.206 24 H -0.212 1.212 25 H -0.198 1.198 26 C 0.313 3.687 27 O -0.398 6.398 28 C -0.067 4.067 29 H 0.082 0.918 30 H 0.123 0.877 31 H 0.082 0.918 32 H 0.232 0.768 33 H 0.064 0.936 34 H 0.120 0.880 35 H 0.066 0.934 36 H 0.115 0.885 37 H 0.099 0.901 38 H 0.097 0.903 39 H 0.101 0.899 40 H 0.105 0.895 41 H 0.084 0.916 42 H 0.099 0.901 43 H 0.089 0.911 44 H 0.083 0.917 45 H 0.035 0.965 46 H 0.039 0.961 47 H 0.071 0.929 48 H 0.072 0.928 49 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -17.852 11.981 14.350 25.848 hybrid contribution -0.044 0.328 -1.724 1.756 sum -17.896 12.309 12.625 25.123 Atomic orbital electron populations 1.23329 0.75955 1.04085 1.02608 1.86546 1.23770 1.33038 1.83562 1.24856 0.93169 0.81840 0.72438 1.90697 1.66875 1.36425 1.44885 1.21568 0.84820 0.85435 1.02023 0.83339 1.86776 1.74898 1.17889 1.53619 1.22884 0.90423 1.02850 0.94637 1.64969 1.03893 1.27437 1.26770 1.23435 0.93248 0.89301 1.02161 1.22427 0.97769 0.99293 0.94784 1.21518 0.95700 0.96574 0.97255 1.22752 0.96954 0.99851 0.96546 1.22076 0.93293 0.86336 1.00401 1.48632 1.25666 1.22207 1.38056 1.21797 0.82638 0.95941 0.98853 1.19399 0.97488 0.93961 0.91695 1.21090 0.93722 1.25155 1.16099 0.92467 1.25006 0.96231 0.96573 0.96514 1.69972 1.24657 1.34938 1.23621 0.86545 0.83436 0.79899 0.77833 1.20554 1.21224 1.19817 1.20092 0.84015 0.85155 0.79455 1.90711 1.75197 1.23799 1.50080 1.22735 0.92851 1.01891 0.89236 0.91779 0.87716 0.91784 0.76803 0.93627 0.88043 0.93443 0.88524 0.90068 0.90261 0.89881 0.89528 0.91579 0.90121 0.91121 0.91675 0.96518 0.96120 0.92943 0.92797 0.88786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 10.56 101.05 1.07 1.26 16 2 O -0.35 -2.87 10.53 -39.27 -0.41 -3.28 16 3 C 0.44 3.83 7.27 36.00 0.26 4.09 16 4 O -0.50 -5.63 16.07 -25.47 -0.41 -6.04 16 5 C 0.12 0.93 3.44 -27.88 -0.10 0.83 16 6 H 0.15 1.08 8.14 -51.93 -0.42 0.65 16 7 O -0.53 -3.99 9.49 -55.14 -0.52 -4.51 16 8 C 0.02 0.17 4.83 -3.83 -0.02 0.15 16 9 N -0.51 -5.34 5.41 -230.61 -1.25 -6.59 16 10 C 0.05 0.42 4.71 -1.72 -0.01 0.41 16 11 C -0.10 -1.13 6.11 -25.27 -0.15 -1.28 16 12 C -0.11 -1.37 0.77 -155.25 -0.12 -1.49 16 13 C -0.12 -1.29 6.08 -25.41 -0.15 -1.45 16 14 C 0.10 1.33 7.37 -2.84 -0.02 1.31 16 15 N -0.61 -10.97 2.94 -172.42 -0.51 -11.48 16 16 C 0.13 2.70 5.89 -4.04 -0.02 2.68 16 17 C 0.01 0.33 5.30 -27.88 -0.15 0.18 16 18 C -0.52 -14.78 9.11 -34.44 -0.31 -15.09 16 19 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 20 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 21 N -0.89 -26.97 13.29 55.43 0.74 -26.23 16 22 Si 0.90 21.71 29.54 -169.99 -5.02 16.69 16 23 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 24 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 25 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 26 C 0.53 9.68 6.63 -11.23 -0.07 9.60 16 27 O -0.52 -11.88 17.17 5.55 0.10 -11.78 16 28 C 0.06 0.75 6.01 -3.12 -0.02 0.73 16 29 H 0.06 0.36 8.13 -51.93 -0.42 -0.07 16 30 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.36 8.13 -51.93 -0.42 -0.06 16 32 H 0.38 2.08 8.41 45.56 0.38 2.46 16 33 H 0.05 0.33 7.82 -51.92 -0.41 -0.08 16 34 H 0.10 0.81 8.12 -51.93 -0.42 0.39 16 35 H 0.05 0.36 6.91 -51.93 -0.36 0.00 16 36 H 0.10 0.90 7.10 -51.93 -0.37 0.53 16 37 H 0.08 1.04 7.92 -51.93 -0.41 0.63 16 38 H 0.08 0.70 7.64 -51.93 -0.40 0.30 16 39 H 0.08 0.87 7.62 -51.93 -0.40 0.47 16 40 H 0.09 0.66 7.67 -51.93 -0.40 0.26 16 41 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.07 1.58 7.93 -51.93 -0.41 1.17 16 44 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 45 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 46 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 47 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 48 H 0.05 0.57 6.86 -51.93 -0.36 0.21 16 49 H 0.09 1.44 7.46 -51.93 -0.39 1.05 16 LS Contribution 396.07 15.07 5.97 5.97 Total: -1.00 -36.02 396.07 -8.51 -44.54 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: -7.27 Total: -0.78 kcal Atomic # 6 Polarization: 3.42 SS G_CDS: 0.08 Total: 3.50 kcal Atomic # 7 Polarization: -43.28 SS G_CDS: -1.02 Total: -44.30 kcal Atomic # 8 Polarization: -24.37 SS G_CDS: -1.25 Total: -25.62 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -36.02 -8.51 -44.54 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274604059.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.458 kcal (2) G-P(sol) polarization free energy of solvation -36.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds