Wall clock time and date at job start Tue Mar 31 2020 23:43:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36947 * 119.99472 * 2 1 4 4 H 1.07995 * 119.99538 * 200.36322 * 3 2 1 5 5 C 1.38812 * 120.00196 * 20.36125 * 3 2 1 6 6 N 1.31621 * 119.99848 * 14.99242 * 5 3 2 7 7 Si 1.86793 * 119.99825 * 194.98700 * 5 3 2 8 8 H 1.48495 * 109.47026 * 85.00531 * 7 5 3 9 9 H 1.48507 * 109.47036 * 205.00279 * 7 5 3 10 10 H 1.48498 * 109.47239 * 325.00331 * 7 5 3 11 11 C 1.46495 * 120.00641 * 179.97438 * 2 1 3 12 12 C 1.53004 * 109.47184 * 270.00395 * 11 2 1 13 13 C 1.52999 * 109.46936 * 179.97438 * 12 11 2 14 14 N 1.46497 * 109.46919 * 179.97438 * 13 12 11 15 15 C 1.46511 * 119.99750 * 269.99617 * 14 13 12 16 16 C 1.34772 * 120.00204 * 90.00120 * 14 13 12 17 17 O 1.21279 * 119.99973 * 359.97438 * 16 14 13 18 18 C 1.50710 * 120.00064 * 180.02562 * 16 14 13 19 19 C 1.52994 * 109.46916 * 179.97438 * 18 16 14 20 20 C 1.50703 * 109.47052 * 179.97438 * 19 18 16 21 21 C 1.38200 * 120.00437 * 264.72590 * 20 19 18 22 22 C 1.38431 * 120.00148 * 179.76965 * 21 20 19 23 23 F 1.35101 * 119.99896 * 180.27439 * 22 21 20 24 24 C 1.38468 * 120.00030 * 0.52240 * 22 21 20 25 25 C 1.38166 * 119.99855 * 359.72845 * 24 22 21 26 26 C 1.38431 * 119.99532 * 84.99771 * 20 19 18 27 27 F 1.35098 * 120.00399 * 359.97438 * 26 20 19 28 28 H 1.09005 * 109.47240 * 275.09587 * 1 2 3 29 29 H 1.08996 * 109.47531 * 35.09757 * 1 2 3 30 30 H 1.09005 * 109.46917 * 155.09533 * 1 2 3 31 31 H 0.96994 * 119.99740 * 180.02562 * 6 5 3 32 32 H 1.08997 * 109.47194 * 149.99897 * 11 2 1 33 33 H 1.09004 * 109.46659 * 29.99999 * 11 2 1 34 34 H 1.08997 * 109.47461 * 59.99667 * 12 11 2 35 35 H 1.08995 * 109.46758 * 299.99464 * 12 11 2 36 36 H 1.08997 * 109.47133 * 59.99692 * 13 12 11 37 37 H 1.09004 * 109.46968 * 299.99641 * 13 12 11 38 38 H 1.08991 * 109.46991 * 270.00117 * 15 14 13 39 39 H 1.09000 * 109.46959 * 30.00495 * 15 14 13 40 40 H 1.09001 * 109.46847 * 149.99880 * 15 14 13 41 41 H 1.08998 * 109.47167 * 59.99355 * 18 16 14 42 42 H 1.09002 * 109.46195 * 299.99559 * 18 16 14 43 43 H 1.08997 * 109.47202 * 299.99841 * 19 18 16 44 44 H 1.08998 * 109.47517 * 59.99829 * 19 18 16 45 45 H 1.08008 * 119.99759 * 0.02562 * 21 20 19 46 46 H 1.07991 * 119.99896 * 179.70390 * 24 22 21 47 47 H 1.08002 * 120.00150 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1861 0.0000 4 1 3.1789 1.2153 -0.3255 5 6 1.5205 2.3506 0.4183 6 7 0.3874 2.2836 1.0846 7 14 2.2822 4.0127 0.0356 8 1 1.8679 4.4460 -1.3230 9 1 1.8220 5.0100 1.0351 10 1 3.7621 3.9035 0.0906 11 6 2.1976 -1.2686 0.0006 12 6 2.4526 -1.7097 1.4433 13 6 3.2171 -3.0349 1.4438 14 7 3.4618 -3.4569 2.8252 15 6 4.6832 -3.0339 3.5149 16 6 2.5634 -4.2343 3.4615 17 8 1.5522 -4.5842 2.8907 18 6 2.8149 -4.6680 4.8828 19 6 1.6504 -5.5353 5.3649 20 6 1.9021 -5.9695 6.7859 21 6 2.4832 -7.1972 7.0408 22 6 2.7187 -7.5939 8.3460 23 9 3.2918 -8.7918 8.5949 24 6 2.3623 -6.7653 9.3965 25 6 1.7766 -5.5401 9.1419 26 6 1.5461 -5.1408 7.8361 27 9 0.9735 -3.9428 7.5872 28 1 -0.3634 0.0913 1.0236 29 1 -0.3634 0.8408 -0.5908 30 1 -0.3633 -0.9322 -0.4328 31 1 -0.0524 3.0974 1.3765 32 1 3.1499 -1.1384 -0.5133 33 1 1.6085 -2.0285 -0.5130 34 1 1.5002 -1.8399 1.9572 35 1 3.0416 -0.9498 1.9567 36 1 4.1695 -2.9051 0.9298 37 1 2.6277 -3.7946 0.9304 38 1 5.4700 -3.7685 3.3438 39 1 5.0008 -2.0649 3.1300 40 1 4.4874 -2.9536 4.5842 41 1 2.9012 -3.7887 5.5211 42 1 3.7399 -5.2427 4.9289 43 1 0.7256 -4.9603 5.3187 44 1 1.5637 -6.4146 4.7267 45 1 2.7573 -7.8454 6.2215 46 1 2.5417 -7.0769 10.4148 47 1 1.4982 -4.8939 9.9613 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001280883025.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:43:28 Heat of formation + Delta-G solvation = -85.634096 kcal Electronic energy + Delta-G solvation = -28834.942059 eV Core-core repulsion = 24461.345817 eV Total energy + Delta-G solvation = -4373.596242 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.170 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -49.33809 -49.22781 -40.01867 -39.23954 -36.29452 -35.26725 -34.44030 -32.31833 -30.97858 -30.35733 -29.59278 -26.92840 -26.16184 -25.73049 -24.39246 -23.37008 -22.23800 -21.46001 -20.15127 -19.00645 -18.05833 -17.67024 -17.62886 -16.88809 -16.67705 -16.29100 -15.96728 -15.77022 -15.63965 -14.83879 -14.72436 -14.64466 -14.20370 -14.16469 -13.81927 -13.62383 -13.35751 -13.13054 -13.03703 -12.82207 -12.73288 -12.66326 -12.58966 -12.22915 -11.92259 -11.51817 -11.40998 -11.31915 -11.24116 -10.87836 -10.79897 -10.64924 -10.39063 -10.02116 -9.86353 -9.75973 -9.67032 -9.51704 -8.93213 -8.56925 -8.45811 -6.70827 -5.66545 -3.10013 0.49527 0.55483 2.70362 2.86179 3.11760 3.40721 3.46578 3.47836 3.69726 3.78167 4.05578 4.21772 4.46143 4.54645 4.63852 4.67117 4.82228 4.84066 5.05665 5.23406 5.28763 5.32040 5.39732 5.45480 5.47360 5.50606 5.54109 5.56676 5.60727 5.66785 5.86227 5.88763 5.90616 6.09196 6.16996 6.29399 6.34599 6.53990 6.71534 6.86435 6.91923 7.18947 7.45458 7.46921 7.79847 7.86601 8.25931 8.45213 9.29464 9.94442 10.43400 11.38603 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.017582 B = 0.002036 C = 0.001949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.123870 B =13749.623776 C =14364.185071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.164 3.836 2 N -0.603 5.603 3 C -0.251 4.251 4 H 0.068 0.932 5 C -0.002 4.002 6 N -0.907 5.907 7 Si 0.903 3.097 8 H -0.288 1.288 9 H -0.292 1.292 10 H -0.281 1.281 11 C 0.156 3.844 12 C -0.150 4.150 13 C 0.115 3.885 14 N -0.614 5.614 15 C 0.077 3.923 16 C 0.512 3.488 17 O -0.538 6.538 18 C -0.134 4.134 19 C -0.068 4.068 20 C -0.084 4.084 21 C -0.122 4.122 22 C 0.090 3.910 23 F -0.136 7.136 24 C -0.130 4.130 25 C -0.123 4.123 26 C 0.094 3.906 27 F -0.128 7.128 28 H 0.028 0.972 29 H 0.042 0.958 30 H -0.002 1.002 31 H 0.251 0.749 32 H 0.042 0.958 33 H 0.037 0.963 34 H 0.057 0.943 35 H 0.061 0.939 36 H 0.071 0.929 37 H 0.078 0.922 38 H 0.054 0.946 39 H 0.076 0.924 40 H 0.069 0.931 41 H 0.095 0.905 42 H 0.094 0.906 43 H 0.091 0.909 44 H 0.090 0.910 45 H 0.146 0.854 46 H 0.145 0.855 47 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.994 -20.480 16.090 27.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.325 5.325 3 C -0.381 4.381 4 H 0.086 0.914 5 C -0.200 4.200 6 N -0.553 5.553 7 Si 0.734 3.266 8 H -0.215 1.215 9 H -0.218 1.218 10 H -0.207 1.207 11 C 0.028 3.972 12 C -0.191 4.191 13 C -0.007 4.007 14 N -0.347 5.347 15 C -0.067 4.067 16 C 0.299 3.701 17 O -0.415 6.415 18 C -0.174 4.174 19 C -0.105 4.105 20 C -0.085 4.085 21 C -0.141 4.141 22 C 0.070 3.930 23 F -0.115 7.115 24 C -0.149 4.149 25 C -0.141 4.141 26 C 0.074 3.926 27 F -0.106 7.106 28 H 0.046 0.954 29 H 0.060 0.940 30 H 0.016 0.984 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.056 0.944 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.090 0.910 37 H 0.097 0.903 38 H 0.073 0.927 39 H 0.095 0.905 40 H 0.087 0.913 41 H 0.113 0.887 42 H 0.112 0.888 43 H 0.110 0.890 44 H 0.108 0.892 45 H 0.164 0.836 46 H 0.162 0.838 47 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 7.345 -20.507 15.817 26.919 hybrid contribution 0.490 1.124 0.168 1.238 sum 7.835 -19.383 15.985 26.317 Atomic orbital electron populations 1.20778 0.82537 0.95409 0.99367 1.44002 1.01980 1.00743 1.85823 1.19206 0.96914 0.85061 1.36914 0.91387 1.24984 0.97977 0.98334 0.98745 1.70099 1.18866 1.26664 1.39645 0.86286 0.78525 0.84184 0.77617 1.21518 1.21833 1.20659 1.20730 0.95603 0.88175 0.92699 1.22613 1.00056 0.94476 1.01976 1.21648 1.00447 0.97900 0.80726 1.47957 1.21200 1.50437 1.15088 1.21808 0.86385 1.00865 0.97610 1.20491 0.83079 0.78251 0.88241 1.90712 1.26716 1.56092 1.67936 1.21656 1.00057 1.01346 0.94307 1.20340 0.99256 1.01161 0.89793 1.19848 0.99055 0.93688 0.95927 1.20964 1.00615 0.96719 0.95815 1.17659 0.98929 0.82562 0.93808 1.91525 1.82169 1.42734 1.95030 1.20989 1.00585 0.93908 0.99427 1.21031 1.00366 0.97099 0.95654 1.17611 0.98822 0.82744 0.93381 1.91563 1.81871 1.42188 1.94982 0.95400 0.93960 0.98354 0.93829 0.93981 0.94438 0.92392 0.92041 0.91024 0.90332 0.92726 0.90476 0.91266 0.88683 0.88806 0.89048 0.89180 0.83587 0.83762 0.83558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.28 9.02 59.84 0.54 4.82 16 2 N -0.60 -15.79 2.93 -181.12 -0.53 -16.32 16 3 C -0.25 -7.04 9.68 -15.05 -0.15 -7.19 16 4 H 0.07 1.85 7.86 -52.49 -0.41 1.43 16 5 C 0.00 -0.07 5.06 -17.43 -0.09 -0.16 16 6 N -0.91 -27.23 10.67 55.49 0.59 -26.64 16 7 Si 0.90 22.18 29.58 -169.99 -5.03 17.15 16 8 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 9 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 C 0.16 3.29 5.71 -4.04 -0.02 3.27 16 12 C -0.15 -2.91 5.86 -26.73 -0.16 -3.06 16 13 C 0.12 1.74 5.41 -4.04 -0.02 1.72 16 14 N -0.61 -8.21 2.87 -181.57 -0.52 -8.74 16 15 C 0.08 0.73 10.24 59.85 0.61 1.34 16 16 C 0.51 7.22 7.67 -10.98 -0.08 7.14 16 17 O -0.54 -9.68 15.56 5.56 0.09 -9.60 16 18 C -0.13 -1.32 4.23 -27.88 -0.12 -1.44 16 19 C -0.07 -0.68 4.41 -27.88 -0.12 -0.80 16 20 C -0.08 -0.73 5.14 -104.56 -0.54 -1.27 16 21 C -0.12 -0.92 9.66 -39.52 -0.38 -1.30 16 22 C 0.09 0.68 7.30 -39.43 -0.29 0.39 16 23 F -0.14 -1.14 17.27 2.25 0.04 -1.10 16 24 C -0.13 -0.83 10.02 -39.52 -0.40 -1.23 16 25 C -0.12 -0.85 10.02 -39.52 -0.40 -1.25 16 26 C 0.09 0.85 7.24 -39.42 -0.29 0.56 16 27 F -0.13 -1.41 16.57 2.25 0.04 -1.38 16 28 H 0.03 0.79 7.40 -51.93 -0.38 0.40 16 29 H 0.04 1.17 7.21 -51.93 -0.37 0.79 16 30 H 0.00 -0.05 7.84 -51.93 -0.41 -0.46 16 31 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 32 H 0.04 0.83 8.03 -51.93 -0.42 0.42 16 33 H 0.04 0.74 7.86 -51.93 -0.41 0.33 16 34 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 35 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 36 H 0.07 0.92 8.07 -51.93 -0.42 0.51 16 37 H 0.08 1.25 7.42 -51.93 -0.39 0.87 16 38 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 39 H 0.08 0.77 8.07 -51.93 -0.42 0.35 16 40 H 0.07 0.56 6.44 -51.93 -0.33 0.22 16 41 H 0.09 0.90 7.40 -51.93 -0.38 0.52 16 42 H 0.09 0.70 8.11 -51.93 -0.42 0.28 16 43 H 0.09 1.09 7.75 -51.93 -0.40 0.69 16 44 H 0.09 0.87 8.01 -51.93 -0.42 0.45 16 45 H 0.15 0.88 8.06 -52.48 -0.42 0.45 16 46 H 0.14 0.60 8.06 -52.49 -0.42 0.18 16 47 H 0.15 0.73 8.06 -52.49 -0.42 0.30 16 LS Contribution 397.82 15.07 6.00 6.00 Total: -1.00 -33.92 397.82 -8.48 -42.40 By element: Atomic # 1 Polarization: 3.92 SS G_CDS: -7.26 Total: -3.33 kcal Atomic # 6 Polarization: 3.45 SS G_CDS: -1.89 Total: 1.55 kcal Atomic # 7 Polarization: -51.24 SS G_CDS: -0.46 Total: -51.70 kcal Atomic # 8 Polarization: -9.68 SS G_CDS: 0.09 Total: -9.60 kcal Atomic # 9 Polarization: -2.55 SS G_CDS: 0.08 Total: -2.48 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.03 Total: 17.15 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -33.92 -8.48 -42.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280883025.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.236 kcal (2) G-P(sol) polarization free energy of solvation -33.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds