Wall clock time and date at job start Tue Mar 31 2020 23:43:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36947 * 119.99472 * 2 1 4 4 H 1.07995 * 119.99538 * 200.36322 * 3 2 1 5 5 C 1.38812 * 120.00196 * 20.36125 * 3 2 1 6 6 N 1.31621 * 119.99848 * 14.99242 * 5 3 2 7 7 Si 1.86793 * 119.99825 * 194.98700 * 5 3 2 8 8 H 1.48495 * 109.47026 * 85.00531 * 7 5 3 9 9 H 1.48507 * 109.47036 * 205.00279 * 7 5 3 10 10 H 1.48498 * 109.47239 * 325.00331 * 7 5 3 11 11 C 1.46495 * 120.00641 * 179.97438 * 2 1 3 12 12 C 1.53004 * 109.47184 * 270.00395 * 11 2 1 13 13 C 1.52999 * 109.46936 * 179.97438 * 12 11 2 14 14 N 1.46497 * 109.46919 * 179.97438 * 13 12 11 15 15 C 1.46511 * 119.99750 * 269.99617 * 14 13 12 16 16 C 1.34772 * 120.00204 * 90.00120 * 14 13 12 17 17 O 1.21279 * 119.99973 * 359.97438 * 16 14 13 18 18 C 1.50710 * 120.00064 * 180.02562 * 16 14 13 19 19 C 1.52994 * 109.46916 * 179.97438 * 18 16 14 20 20 C 1.50703 * 109.47052 * 179.97438 * 19 18 16 21 21 C 1.38200 * 120.00437 * 264.72590 * 20 19 18 22 22 C 1.38431 * 120.00148 * 179.76965 * 21 20 19 23 23 F 1.35101 * 119.99896 * 180.27439 * 22 21 20 24 24 C 1.38468 * 120.00030 * 0.52240 * 22 21 20 25 25 C 1.38166 * 119.99855 * 359.72845 * 24 22 21 26 26 C 1.38431 * 119.99532 * 84.99771 * 20 19 18 27 27 F 1.35098 * 120.00399 * 359.97438 * 26 20 19 28 28 H 1.09005 * 109.47240 * 275.09587 * 1 2 3 29 29 H 1.08996 * 109.47531 * 35.09757 * 1 2 3 30 30 H 1.09005 * 109.46917 * 155.09533 * 1 2 3 31 31 H 0.96994 * 119.99740 * 180.02562 * 6 5 3 32 32 H 1.08997 * 109.47194 * 149.99897 * 11 2 1 33 33 H 1.09004 * 109.46659 * 29.99999 * 11 2 1 34 34 H 1.08997 * 109.47461 * 59.99667 * 12 11 2 35 35 H 1.08995 * 109.46758 * 299.99464 * 12 11 2 36 36 H 1.08997 * 109.47133 * 59.99692 * 13 12 11 37 37 H 1.09004 * 109.46968 * 299.99641 * 13 12 11 38 38 H 1.08991 * 109.46991 * 270.00117 * 15 14 13 39 39 H 1.09000 * 109.46959 * 30.00495 * 15 14 13 40 40 H 1.09001 * 109.46847 * 149.99880 * 15 14 13 41 41 H 1.08998 * 109.47167 * 59.99355 * 18 16 14 42 42 H 1.09002 * 109.46195 * 299.99559 * 18 16 14 43 43 H 1.08997 * 109.47202 * 299.99841 * 19 18 16 44 44 H 1.08998 * 109.47517 * 59.99829 * 19 18 16 45 45 H 1.08008 * 119.99759 * 0.02562 * 21 20 19 46 46 H 1.07991 * 119.99896 * 179.70390 * 24 22 21 47 47 H 1.08002 * 120.00150 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1861 0.0000 4 1 3.1789 1.2153 -0.3255 5 6 1.5205 2.3506 0.4183 6 7 0.3874 2.2836 1.0846 7 14 2.2822 4.0127 0.0356 8 1 1.8679 4.4460 -1.3230 9 1 1.8220 5.0100 1.0351 10 1 3.7621 3.9035 0.0906 11 6 2.1976 -1.2686 0.0006 12 6 2.4526 -1.7097 1.4433 13 6 3.2171 -3.0349 1.4438 14 7 3.4618 -3.4569 2.8252 15 6 4.6832 -3.0339 3.5149 16 6 2.5634 -4.2343 3.4615 17 8 1.5522 -4.5842 2.8907 18 6 2.8149 -4.6680 4.8828 19 6 1.6504 -5.5353 5.3649 20 6 1.9021 -5.9695 6.7859 21 6 2.4832 -7.1972 7.0408 22 6 2.7187 -7.5939 8.3460 23 9 3.2918 -8.7918 8.5949 24 6 2.3623 -6.7653 9.3965 25 6 1.7766 -5.5401 9.1419 26 6 1.5461 -5.1408 7.8361 27 9 0.9735 -3.9428 7.5872 28 1 -0.3634 0.0913 1.0236 29 1 -0.3634 0.8408 -0.5908 30 1 -0.3633 -0.9322 -0.4328 31 1 -0.0524 3.0974 1.3765 32 1 3.1499 -1.1384 -0.5133 33 1 1.6085 -2.0285 -0.5130 34 1 1.5002 -1.8399 1.9572 35 1 3.0416 -0.9498 1.9567 36 1 4.1695 -2.9051 0.9298 37 1 2.6277 -3.7946 0.9304 38 1 5.4700 -3.7685 3.3438 39 1 5.0008 -2.0649 3.1300 40 1 4.4874 -2.9536 4.5842 41 1 2.9012 -3.7887 5.5211 42 1 3.7399 -5.2427 4.9289 43 1 0.7256 -4.9603 5.3187 44 1 1.5637 -6.4146 4.7267 45 1 2.7573 -7.8454 6.2215 46 1 2.5417 -7.0769 10.4148 47 1 1.4982 -4.8939 9.9613 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001280883025.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:43:27 Heat of formation + Delta-G solvation = -103.892632 kcal Electronic energy + Delta-G solvation = -28835.733809 eV Core-core repulsion = 24461.345817 eV Total energy + Delta-G solvation = -4374.387991 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.170 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -49.97878 -49.93844 -41.05734 -39.91725 -37.96967 -36.71516 -35.23608 -34.04190 -32.23531 -31.40349 -30.49169 -28.16160 -27.82124 -27.18528 -25.58412 -24.02673 -23.64164 -22.36365 -21.92124 -20.06513 -18.77320 -18.71983 -18.39346 -18.27722 -17.76532 -17.29814 -16.88881 -16.79461 -16.58508 -16.35223 -15.84773 -15.46550 -15.37025 -15.31255 -15.05245 -14.84360 -14.57445 -14.31523 -14.15996 -13.93174 -13.74347 -13.56559 -13.47304 -13.22792 -13.21575 -13.02742 -12.73847 -12.64369 -12.52427 -12.45008 -12.27341 -12.11307 -12.03353 -11.95890 -11.87111 -11.41629 -10.88724 -10.64642 -10.14089 -9.67619 -9.56592 -8.82093 -7.82888 -5.29653 -0.11651 0.00220 1.45592 1.48388 1.56286 1.61746 2.05463 2.33832 2.51506 3.09278 3.17614 3.30497 3.38083 3.61268 3.68600 3.76140 3.93740 4.03171 4.03758 4.16255 4.17831 4.29794 4.37773 4.51803 4.56448 4.62824 4.65362 4.73576 4.74860 4.79198 4.83515 4.90091 4.94900 4.95557 4.98817 5.00563 5.09853 5.19581 5.25089 5.26579 5.42760 5.60070 5.63069 5.67087 5.76115 6.31482 6.42230 7.12977 7.17899 7.86144 8.31319 9.21695 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.017582 B = 0.002036 C = 0.001949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.123870 B =13749.623776 C =14364.185071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.178 3.822 2 N -0.622 5.622 3 C -0.258 4.258 4 H 0.078 0.922 5 C -0.062 4.062 6 N -0.944 5.944 7 Si 0.973 3.027 8 H -0.286 1.286 9 H -0.298 1.298 10 H -0.264 1.264 11 C 0.151 3.849 12 C -0.130 4.130 13 C 0.125 3.875 14 N -0.617 5.617 15 C 0.070 3.930 16 C 0.502 3.498 17 O -0.586 6.586 18 C -0.123 4.123 19 C -0.063 4.063 20 C -0.089 4.089 21 C -0.119 4.119 22 C 0.083 3.917 23 F -0.140 7.140 24 C -0.121 4.121 25 C -0.118 4.118 26 C 0.072 3.928 27 F -0.146 7.146 28 H -0.004 1.004 29 H 0.019 0.981 30 H 0.026 0.974 31 H 0.246 0.754 32 H 0.062 0.938 33 H 0.051 0.949 34 H 0.017 0.983 35 H 0.043 0.957 36 H 0.103 0.897 37 H 0.070 0.930 38 H 0.085 0.915 39 H 0.072 0.928 40 H 0.085 0.915 41 H 0.101 0.899 42 H 0.128 0.872 43 H 0.062 0.938 44 H 0.090 0.910 45 H 0.160 0.840 46 H 0.171 0.829 47 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.792 -21.620 16.972 29.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.345 5.345 3 C -0.388 4.388 4 H 0.096 0.904 5 C -0.256 4.256 6 N -0.591 5.591 7 Si 0.801 3.199 8 H -0.213 1.213 9 H -0.224 1.224 10 H -0.189 1.189 11 C 0.025 3.975 12 C -0.171 4.171 13 C 0.002 3.998 14 N -0.349 5.349 15 C -0.072 4.072 16 C 0.292 3.708 17 O -0.467 6.467 18 C -0.162 4.162 19 C -0.101 4.101 20 C -0.090 4.090 21 C -0.138 4.138 22 C 0.064 3.936 23 F -0.119 7.119 24 C -0.139 4.139 25 C -0.136 4.136 26 C 0.053 3.947 27 F -0.125 7.125 28 H 0.014 0.986 29 H 0.038 0.962 30 H 0.044 0.956 31 H 0.056 0.944 32 H 0.080 0.920 33 H 0.069 0.931 34 H 0.036 0.964 35 H 0.062 0.938 36 H 0.121 0.879 37 H 0.088 0.912 38 H 0.104 0.896 39 H 0.091 0.909 40 H 0.103 0.897 41 H 0.119 0.881 42 H 0.146 0.854 43 H 0.080 0.920 44 H 0.109 0.891 45 H 0.178 0.822 46 H 0.188 0.812 47 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 10.206 -21.672 16.707 29.206 hybrid contribution -0.367 1.388 -0.085 1.438 sum 9.840 -20.284 16.622 28.010 Atomic orbital electron populations 1.20497 0.83237 0.95729 0.97228 1.44289 1.02042 1.02163 1.85970 1.19604 0.97328 0.85944 1.35958 0.90404 1.25846 0.98717 1.02052 0.99035 1.70291 1.20532 1.27110 1.41176 0.85193 0.78468 0.79336 0.76927 1.21260 1.22447 1.18875 1.20937 0.96169 0.86499 0.93892 1.22302 0.98349 0.96534 0.99955 1.21416 1.01101 0.94900 0.82408 1.48082 1.22324 1.49894 1.14604 1.22087 0.85371 1.01531 0.98169 1.21264 0.82280 0.77686 0.89574 1.90685 1.28696 1.58011 1.69291 1.21653 1.01406 1.01927 0.91222 1.20209 0.98126 1.00770 0.91017 1.19673 1.00135 0.94308 0.94880 1.21054 1.00029 0.96214 0.96498 1.17804 0.99086 0.82589 0.94153 1.91520 1.82278 1.43027 1.95043 1.21272 0.99097 0.93097 1.00440 1.21246 0.99646 0.97507 0.95231 1.17934 0.99788 0.82438 0.94561 1.91517 1.82417 1.43354 1.95192 0.98552 0.96249 0.95588 0.94450 0.91985 0.93097 0.96382 0.93819 0.87856 0.91199 0.89628 0.90870 0.89674 0.88108 0.85399 0.91976 0.89126 0.82216 0.81197 0.81598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.61 9.02 127.77 1.15 10.76 16 2 N -0.62 -32.83 2.93 -726.94 -2.13 -34.96 16 3 C -0.26 -14.47 9.68 84.03 0.81 -13.66 16 4 H 0.08 4.13 7.86 -2.91 -0.02 4.10 16 5 C -0.06 -3.59 5.06 84.86 0.43 -3.16 16 6 N -0.94 -58.33 10.67 21.65 0.23 -58.10 16 7 Si 0.97 45.83 29.58 68.60 2.03 47.86 16 8 H -0.29 -13.26 7.11 99.48 0.71 -12.56 16 9 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 10 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 11 C 0.15 6.30 5.71 86.38 0.49 6.80 16 12 C -0.13 -5.09 5.86 30.60 0.18 -4.91 16 13 C 0.13 3.64 5.41 86.38 0.47 4.10 16 14 N -0.62 -15.75 2.87 -846.74 -2.43 -18.18 16 15 C 0.07 1.15 10.24 127.77 1.31 2.46 16 16 C 0.50 14.07 7.67 87.66 0.67 14.74 16 17 O -0.59 -21.84 15.56 -3.03 -0.05 -21.89 16 18 C -0.12 -2.30 4.23 29.85 0.13 -2.17 16 19 C -0.06 -1.28 4.41 29.85 0.13 -1.15 16 20 C -0.09 -1.47 5.14 -19.83 -0.10 -1.57 16 21 C -0.12 -1.59 9.66 22.31 0.22 -1.37 16 22 C 0.08 1.08 7.30 22.37 0.16 1.24 16 23 F -0.14 -2.04 17.27 44.97 0.78 -1.26 16 24 C -0.12 -1.23 10.02 22.31 0.22 -1.00 16 25 C -0.12 -1.41 10.02 22.31 0.22 -1.19 16 26 C 0.07 1.26 7.24 22.37 0.16 1.42 16 27 F -0.15 -3.32 16.57 44.97 0.74 -2.57 16 28 H 0.00 -0.23 7.40 -2.38 -0.02 -0.25 16 29 H 0.02 1.09 7.21 -2.39 -0.02 1.07 16 30 H 0.03 1.21 7.84 -2.38 -0.02 1.19 16 31 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 32 H 0.06 2.34 8.03 -2.39 -0.02 2.32 16 33 H 0.05 1.97 7.86 -2.39 -0.02 1.96 16 34 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.10 2.37 8.07 -2.39 -0.02 2.35 16 37 H 0.07 2.19 7.42 -2.39 -0.02 2.17 16 38 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.07 1.29 8.07 -2.39 -0.02 1.27 16 40 H 0.08 1.13 6.44 -2.39 -0.02 1.12 16 41 H 0.10 1.80 7.40 -2.39 -0.02 1.79 16 42 H 0.13 1.52 8.11 -2.39 -0.02 1.50 16 43 H 0.06 1.60 7.75 -2.39 -0.02 1.58 16 44 H 0.09 1.77 8.01 -2.39 -0.02 1.75 16 45 H 0.16 1.60 8.06 -2.91 -0.02 1.58 16 46 H 0.17 0.83 8.06 -2.91 -0.02 0.81 16 47 H 0.17 1.27 8.06 -2.91 -0.02 1.25 16 Total: -1.00 -76.39 397.82 6.79 -69.60 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: 0.96 Total: 8.16 kcal Atomic # 6 Polarization: 4.68 SS G_CDS: 6.66 Total: 11.34 kcal Atomic # 7 Polarization: -106.90 SS G_CDS: -4.33 Total: -111.23 kcal Atomic # 8 Polarization: -21.84 SS G_CDS: -0.05 Total: -21.89 kcal Atomic # 9 Polarization: -5.36 SS G_CDS: 1.52 Total: -3.83 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 2.03 Total: 47.86 kcal Total: -76.39 6.79 -69.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280883025.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.293 kcal (2) G-P(sol) polarization free energy of solvation -76.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds