Wall clock time and date at job start Tue Mar 31 2020 23:07:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42896 * 109.47147 * 2 1 4 4 C 1.42900 * 113.99920 * 179.97438 * 3 2 1 5 5 H 1.08999 * 112.85053 * 18.80456 * 4 3 2 6 6 C 1.53780 * 113.69312 * 247.53540 * 4 3 2 7 7 C 1.53954 * 87.11108 * 220.07820 * 6 4 3 8 8 H 1.09003 * 113.66482 * 139.88653 * 7 6 4 9 9 N 1.46499 * 113.61579 * 270.84084 * 7 6 4 10 10 C 1.34779 * 119.99984 * 252.42147 * 9 7 6 11 11 O 1.21348 * 120.00118 * 0.02562 * 10 9 7 12 12 C 1.49447 * 119.99931 * 180.02562 * 10 9 7 13 13 O 1.21348 * 119.99807 * 354.94993 * 12 10 9 14 14 N 1.34775 * 120.00246 * 174.95298 * 12 10 9 15 15 C 1.46494 * 120.00407 * 185.06223 * 14 12 10 16 16 C 1.52997 * 109.47575 * 185.00793 * 15 14 12 17 17 C 1.50700 * 115.54715 * 269.60896 * 16 15 14 18 18 H 1.08005 * 120.00517 * 95.24391 * 17 16 15 19 19 C 1.37881 * 119.99786 * 275.24302 * 17 16 15 20 20 N 1.31507 * 120.00354 * 5.14747 * 19 17 16 21 21 Si 1.86803 * 119.99817 * 185.14888 * 19 17 16 22 22 H 1.48500 * 109.47471 * 89.99956 * 21 19 17 23 23 H 1.48499 * 109.46931 * 210.00203 * 21 19 17 24 24 H 1.48503 * 109.47360 * 329.99857 * 21 19 17 25 25 C 1.53000 * 117.50268 * 123.89855 * 16 15 14 26 26 C 1.53004 * 117.50075 * 55.27334 * 16 15 14 27 27 C 1.53781 * 87.02124 * 25.36563 * 7 6 4 28 28 H 1.08994 * 113.61726 * 89.22531 * 27 7 6 29 29 O 1.42901 * 113.61248 * 220.05227 * 27 7 6 30 30 C 1.42904 * 113.99570 * 208.46883 * 29 27 7 31 31 H 1.09001 * 109.47426 * 300.00020 * 1 2 3 32 32 H 1.09003 * 109.46989 * 60.00276 * 1 2 3 33 33 H 1.08999 * 109.47498 * 180.02562 * 1 2 3 34 34 H 1.09001 * 109.47426 * 239.99980 * 2 1 3 35 35 H 1.09003 * 109.46989 * 119.99723 * 2 1 3 36 36 H 1.08996 * 113.61519 * 334.55402 * 6 4 3 37 37 H 1.08999 * 113.61462 * 105.37452 * 6 4 3 38 38 H 0.96995 * 120.00208 * 72.42660 * 9 7 6 39 39 H 0.97004 * 119.99500 * 5.06291 * 14 12 10 40 40 H 1.09005 * 109.47430 * 305.00944 * 15 14 12 41 41 H 1.09001 * 109.46933 * 65.00629 * 15 14 12 42 42 H 0.96995 * 120.00715 * 184.99956 * 20 19 17 43 43 H 1.09005 * 117.49460 * 0.02562 * 25 16 15 44 44 H 1.08997 * 117.49831 * 145.02497 * 25 16 15 45 45 H 1.08999 * 117.50037 * 214.98289 * 26 16 15 46 46 H 1.09002 * 117.49373 * 359.97438 * 26 16 15 47 47 H 1.09003 * 109.47235 * 179.97438 * 30 29 27 48 48 H 1.09004 * 109.47127 * 299.99388 * 30 29 27 49 49 H 1.09001 * 109.47362 * 59.99567 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4308 1.4600 0.0006 5 1 3.9280 0.5455 -0.3228 6 6 4.0038 2.0454 1.3021 7 6 4.9913 2.8327 0.4215 8 1 5.1625 3.8540 0.7617 9 7 6.2339 2.1089 0.1418 10 6 7.3833 2.4893 0.7341 11 8 7.3888 3.4310 1.4994 12 6 8.6510 1.7513 0.4483 13 8 8.6301 0.7549 -0.2440 14 7 9.8175 2.1924 0.9594 15 6 11.0739 1.5357 0.5903 16 6 12.2231 2.1430 1.3974 17 6 12.9140 3.3206 0.7594 18 1 12.6151 4.3262 1.0161 19 6 13.9278 3.1143 -0.1520 20 7 14.2240 1.8935 -0.5410 21 14 14.8808 4.5689 -0.8342 22 1 16.0538 4.8434 0.0340 23 1 15.3453 4.2553 -2.2094 24 1 14.0007 5.7645 -0.8698 25 6 13.0783 1.1907 2.2356 26 6 12.0944 2.1404 2.9220 27 6 3.9489 2.7251 -0.7039 28 1 3.2305 3.5447 -0.7136 29 8 4.5188 2.4715 -1.9896 30 6 3.7469 2.9821 -3.0784 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 1.8934 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 3.3010 2.6798 1.8421 37 1 4.4816 1.3032 1.9415 38 1 6.2295 1.3560 -0.4697 39 1 9.8250 2.9447 1.5717 40 1 11.0032 0.4693 0.8047 41 1 11.2607 1.6808 -0.4737 42 1 14.9830 1.7413 -1.1255 43 1 12.8224 0.1314 2.2118 44 1 14.1410 1.4158 2.3257 45 1 12.5099 2.9902 3.4636 46 1 11.1908 1.7064 3.3500 47 1 4.2466 2.7493 -4.0188 48 1 2.7579 2.5240 -3.0690 49 1 3.6477 4.0630 -2.9781 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324035465.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:53 Heat of formation + Delta-G solvation = -112.375213 kcal Electronic energy + Delta-G solvation = -29774.529356 eV Core-core repulsion = 25510.861048 eV Total energy + Delta-G solvation = -4263.668308 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.90640 -39.74982 -38.13299 -37.57996 -36.75605 -36.15781 -33.69547 -32.79685 -31.95571 -31.17293 -27.37703 -27.22070 -25.67797 -24.93819 -24.84465 -23.17653 -23.10800 -21.28829 -20.15140 -19.85472 -19.45513 -18.27233 -17.72399 -16.93667 -16.36399 -16.21608 -16.04301 -15.76619 -15.62501 -15.33990 -15.00542 -14.66178 -14.56849 -14.18164 -13.77721 -13.63686 -13.45773 -13.32667 -13.20127 -13.01149 -12.61767 -12.49247 -12.15040 -11.84571 -11.80575 -11.58268 -11.55619 -11.36339 -11.33667 -11.16094 -11.05307 -10.89316 -10.54535 -10.29075 -10.24195 -9.69147 -9.63252 -9.31066 -9.21747 -9.00824 -8.50886 -8.37053 -8.24362 -6.09409 -4.17497 1.73904 2.55652 3.10614 3.27642 3.35331 3.38046 3.53360 3.60207 3.94852 4.11137 4.12577 4.36887 4.43208 4.55397 4.68231 4.78828 4.86426 4.91417 4.98927 5.11062 5.12251 5.14300 5.19690 5.30217 5.33361 5.40482 5.49358 5.54460 5.57670 5.61379 5.71728 5.96098 6.20732 6.30925 6.36738 6.53125 6.64537 6.70473 6.73194 6.92721 6.97921 7.05412 7.22478 7.38701 7.45589 7.81099 7.82976 8.10314 8.32659 8.48592 8.85300 9.49919 10.99160 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.018795 B = 0.002182 C = 0.002079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.414432 B =12831.850950 C =13467.307366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.055 3.945 3 O -0.375 6.375 4 C 0.047 3.953 5 H 0.097 0.903 6 C -0.166 4.166 7 C 0.129 3.871 8 H 0.119 0.881 9 N -0.681 5.681 10 C 0.513 3.487 11 O -0.521 6.521 12 C 0.496 3.504 13 O -0.534 6.534 14 N -0.674 5.674 15 C 0.159 3.841 16 C 0.025 3.975 17 C -0.499 4.499 18 H 0.062 0.938 19 C 0.072 3.928 20 N -0.875 5.875 21 Si 0.891 3.109 22 H -0.280 1.280 23 H -0.286 1.286 24 H -0.273 1.273 25 C -0.145 4.145 26 C -0.209 4.209 27 C 0.061 3.939 28 H 0.109 0.891 29 O -0.369 6.369 30 C 0.031 3.969 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.070 0.930 34 H 0.049 0.951 35 H 0.050 0.950 36 H 0.104 0.896 37 H 0.086 0.914 38 H 0.417 0.583 39 H 0.410 0.590 40 H 0.051 0.949 41 H 0.079 0.921 42 H 0.262 0.738 43 H 0.065 0.935 44 H 0.084 0.916 45 H 0.081 0.919 46 H 0.067 0.933 47 H 0.087 0.913 48 H 0.043 0.957 49 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.395 -1.948 0.002 25.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.022 4.022 3 O -0.294 6.294 4 C -0.011 4.011 5 H 0.115 0.885 6 C -0.205 4.205 7 C 0.023 3.977 8 H 0.137 0.863 9 N -0.335 5.335 10 C 0.295 3.705 11 O -0.396 6.396 12 C 0.276 3.724 13 O -0.413 6.413 14 N -0.325 5.325 15 C 0.037 3.963 16 C 0.024 3.976 17 C -0.536 4.536 18 H 0.080 0.920 19 C -0.132 4.132 20 N -0.511 5.511 21 Si 0.718 3.282 22 H -0.206 1.206 23 H -0.212 1.212 24 H -0.198 1.198 25 C -0.183 4.183 26 C -0.246 4.246 27 C 0.001 3.999 28 H 0.127 0.873 29 O -0.287 6.287 30 C -0.066 4.066 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.089 0.911 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.123 0.877 37 H 0.104 0.896 38 H 0.254 0.746 39 H 0.246 0.754 40 H 0.069 0.931 41 H 0.097 0.903 42 H 0.072 0.928 43 H 0.084 0.916 44 H 0.103 0.897 45 H 0.099 0.901 46 H 0.085 0.915 47 H 0.106 0.894 48 H 0.062 0.938 49 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -25.213 -2.015 -0.177 25.294 hybrid contribution 0.498 0.554 -0.461 0.876 sum -24.715 -1.461 -0.638 24.767 Atomic orbital electron populations 1.21750 0.93735 1.02320 1.03050 1.22540 0.95550 0.83773 1.00309 1.87910 1.20273 1.26656 1.94559 1.24503 0.81468 0.99077 0.96062 0.88519 1.23820 0.98455 1.01087 0.97150 1.22018 0.83047 0.98119 0.94542 0.86349 1.45203 1.06104 1.35006 1.47138 1.20540 0.85120 0.84140 0.80745 1.90740 1.86204 1.27778 1.34838 1.19880 0.84934 0.85461 0.82152 1.90730 1.86624 1.25307 1.38611 1.46092 1.05945 1.34830 1.45603 1.21394 0.79750 0.94274 1.00883 1.19076 0.94227 0.97470 0.86830 1.20434 1.18475 0.91063 1.23655 0.91987 1.24992 0.97168 0.95743 0.95335 1.70003 1.27231 1.19823 1.34076 0.86608 0.80297 0.82947 0.78299 1.20622 1.21223 1.19766 1.22540 0.96871 0.93951 1.04975 1.22989 1.00789 1.02727 0.98104 1.24569 0.94825 0.97414 0.83062 0.87346 1.87964 1.48252 1.78867 1.13607 1.22837 0.95831 0.98008 0.89900 0.91833 0.91937 0.91080 0.93221 0.93176 0.87726 0.89556 0.74554 0.75369 0.93101 0.90319 0.92846 0.91600 0.89713 0.90068 0.91480 0.89414 0.93791 0.93774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 10.28 37.16 0.38 -0.48 16 2 C 0.05 0.39 6.50 37.16 0.24 0.63 16 3 O -0.37 -3.38 10.36 -35.23 -0.36 -3.75 16 4 C 0.05 0.42 4.02 -25.92 -0.10 0.31 16 5 H 0.10 0.86 7.87 -51.93 -0.41 0.45 16 6 C -0.17 -1.45 7.72 -25.83 -0.20 -1.65 16 7 C 0.13 1.36 4.28 -67.03 -0.29 1.07 16 8 H 0.12 1.30 7.47 -51.93 -0.39 0.91 16 9 N -0.68 -8.86 4.97 -53.36 -0.27 -9.13 16 10 C 0.51 8.30 7.89 -11.59 -0.09 8.21 16 11 O -0.52 -9.19 16.09 5.50 0.09 -9.10 16 12 C 0.50 9.27 7.88 -11.59 -0.09 9.18 16 13 O -0.53 -10.95 16.47 5.50 0.09 -10.86 16 14 N -0.67 -13.27 5.40 -60.73 -0.33 -13.59 16 15 C 0.16 3.58 5.71 -4.05 -0.02 3.56 16 16 C 0.02 0.58 1.46 -155.66 -0.23 0.36 16 17 C -0.50 -13.06 8.77 -34.44 -0.30 -13.36 16 18 H 0.06 1.62 7.82 -52.48 -0.41 1.21 16 19 C 0.07 1.91 5.40 -17.82 -0.10 1.81 16 20 N -0.88 -24.18 12.91 55.43 0.72 -23.46 16 21 Si 0.89 20.76 29.54 -169.99 -5.02 15.73 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 23 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 24 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 25 C -0.15 -3.28 9.38 -26.73 -0.25 -3.53 16 26 C -0.21 -4.31 9.50 -26.73 -0.25 -4.57 16 27 C 0.06 0.56 4.03 -25.92 -0.10 0.45 16 28 H 0.11 0.85 7.88 -51.93 -0.41 0.44 16 29 O -0.37 -3.90 10.01 -35.23 -0.35 -4.25 16 30 C 0.03 0.24 10.85 101.05 1.10 1.34 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.42 5.33 7.82 -40.82 -0.32 5.01 16 39 H 0.41 7.79 7.70 -40.82 -0.31 7.47 16 40 H 0.05 1.14 7.83 -51.93 -0.41 0.73 16 41 H 0.08 1.99 8.04 -51.93 -0.42 1.57 16 42 H 0.26 6.94 8.32 -40.82 -0.34 6.60 16 43 H 0.07 1.41 8.03 -51.93 -0.42 0.99 16 44 H 0.08 2.03 8.14 -51.93 -0.42 1.61 16 45 H 0.08 1.65 8.14 -51.93 -0.42 1.23 16 46 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 47 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 48 H 0.04 0.31 8.14 -51.93 -0.42 -0.12 16 49 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 LS Contribution 415.35 15.07 6.26 6.26 Total: -1.00 -30.13 415.35 -7.61 -37.74 By element: Atomic # 1 Polarization: 19.21 SS G_CDS: -8.12 Total: 11.08 kcal Atomic # 6 Polarization: 3.64 SS G_CDS: -0.31 Total: 3.33 kcal Atomic # 7 Polarization: -46.31 SS G_CDS: 0.12 Total: -46.18 kcal Atomic # 8 Polarization: -27.42 SS G_CDS: -0.54 Total: -27.96 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -30.13 -7.61 -37.74 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324035465.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.636 kcal (2) G-P(sol) polarization free energy of solvation -30.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds