Wall clock time and date at job start Tue Mar 31 2020 23:07:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42896 * 109.47147 * 2 1 4 4 C 1.42900 * 113.99920 * 179.97438 * 3 2 1 5 5 H 1.08999 * 112.85053 * 18.80456 * 4 3 2 6 6 C 1.53780 * 113.69312 * 247.53540 * 4 3 2 7 7 C 1.53954 * 87.11108 * 220.07820 * 6 4 3 8 8 H 1.09003 * 113.66482 * 139.88653 * 7 6 4 9 9 N 1.46499 * 113.61579 * 270.84084 * 7 6 4 10 10 C 1.34779 * 119.99984 * 252.42147 * 9 7 6 11 11 O 1.21348 * 120.00118 * 0.02562 * 10 9 7 12 12 C 1.49447 * 119.99931 * 180.02562 * 10 9 7 13 13 O 1.21348 * 119.99807 * 354.94993 * 12 10 9 14 14 N 1.34775 * 120.00246 * 174.95298 * 12 10 9 15 15 C 1.46494 * 120.00407 * 185.06223 * 14 12 10 16 16 C 1.52997 * 109.47575 * 185.00793 * 15 14 12 17 17 C 1.50700 * 115.54715 * 269.60896 * 16 15 14 18 18 H 1.08005 * 120.00517 * 95.24391 * 17 16 15 19 19 C 1.37881 * 119.99786 * 275.24302 * 17 16 15 20 20 N 1.31507 * 120.00354 * 5.14747 * 19 17 16 21 21 Si 1.86803 * 119.99817 * 185.14888 * 19 17 16 22 22 H 1.48500 * 109.47471 * 89.99956 * 21 19 17 23 23 H 1.48499 * 109.46931 * 210.00203 * 21 19 17 24 24 H 1.48503 * 109.47360 * 329.99857 * 21 19 17 25 25 C 1.53000 * 117.50268 * 123.89855 * 16 15 14 26 26 C 1.53004 * 117.50075 * 55.27334 * 16 15 14 27 27 C 1.53781 * 87.02124 * 25.36563 * 7 6 4 28 28 H 1.08994 * 113.61726 * 89.22531 * 27 7 6 29 29 O 1.42901 * 113.61248 * 220.05227 * 27 7 6 30 30 C 1.42904 * 113.99570 * 208.46883 * 29 27 7 31 31 H 1.09001 * 109.47426 * 300.00020 * 1 2 3 32 32 H 1.09003 * 109.46989 * 60.00276 * 1 2 3 33 33 H 1.08999 * 109.47498 * 180.02562 * 1 2 3 34 34 H 1.09001 * 109.47426 * 239.99980 * 2 1 3 35 35 H 1.09003 * 109.46989 * 119.99723 * 2 1 3 36 36 H 1.08996 * 113.61519 * 334.55402 * 6 4 3 37 37 H 1.08999 * 113.61462 * 105.37452 * 6 4 3 38 38 H 0.96995 * 120.00208 * 72.42660 * 9 7 6 39 39 H 0.97004 * 119.99500 * 5.06291 * 14 12 10 40 40 H 1.09005 * 109.47430 * 305.00944 * 15 14 12 41 41 H 1.09001 * 109.46933 * 65.00629 * 15 14 12 42 42 H 0.96995 * 120.00715 * 184.99956 * 20 19 17 43 43 H 1.09005 * 117.49460 * 0.02562 * 25 16 15 44 44 H 1.08997 * 117.49831 * 145.02497 * 25 16 15 45 45 H 1.08999 * 117.50037 * 214.98289 * 26 16 15 46 46 H 1.09002 * 117.49373 * 359.97438 * 26 16 15 47 47 H 1.09003 * 109.47235 * 179.97438 * 30 29 27 48 48 H 1.09004 * 109.47127 * 299.99388 * 30 29 27 49 49 H 1.09001 * 109.47362 * 59.99567 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4308 1.4600 0.0006 5 1 3.9280 0.5455 -0.3228 6 6 4.0038 2.0454 1.3021 7 6 4.9913 2.8327 0.4215 8 1 5.1625 3.8540 0.7617 9 7 6.2339 2.1089 0.1418 10 6 7.3833 2.4893 0.7341 11 8 7.3888 3.4310 1.4994 12 6 8.6510 1.7513 0.4483 13 8 8.6301 0.7549 -0.2440 14 7 9.8175 2.1924 0.9594 15 6 11.0739 1.5357 0.5903 16 6 12.2231 2.1430 1.3974 17 6 12.9140 3.3206 0.7594 18 1 12.6151 4.3262 1.0161 19 6 13.9278 3.1143 -0.1520 20 7 14.2240 1.8935 -0.5410 21 14 14.8808 4.5689 -0.8342 22 1 16.0538 4.8434 0.0340 23 1 15.3453 4.2553 -2.2094 24 1 14.0007 5.7645 -0.8698 25 6 13.0783 1.1907 2.2356 26 6 12.0944 2.1404 2.9220 27 6 3.9489 2.7251 -0.7039 28 1 3.2305 3.5447 -0.7136 29 8 4.5188 2.4715 -1.9896 30 6 3.7469 2.9821 -3.0784 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 1.8934 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 3.3010 2.6798 1.8421 37 1 4.4816 1.3032 1.9415 38 1 6.2295 1.3560 -0.4697 39 1 9.8250 2.9447 1.5717 40 1 11.0032 0.4693 0.8047 41 1 11.2607 1.6808 -0.4737 42 1 14.9830 1.7413 -1.1255 43 1 12.8224 0.1314 2.2118 44 1 14.1410 1.4158 2.3257 45 1 12.5099 2.9902 3.4636 46 1 11.1908 1.7064 3.3500 47 1 4.2466 2.7493 -4.0188 48 1 2.7579 2.5240 -3.0690 49 1 3.6477 4.0630 -2.9781 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324035465.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:52 Heat of formation + Delta-G solvation = -133.570132 kcal Electronic energy + Delta-G solvation = -29775.448437 eV Core-core repulsion = 25510.861048 eV Total energy + Delta-G solvation = -4264.587389 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.97610 -40.91562 -39.50153 -38.50128 -38.27100 -37.00830 -35.21252 -34.02259 -33.87179 -31.74316 -28.87299 -28.01484 -27.49948 -26.15252 -25.53894 -24.34281 -23.67865 -23.00972 -21.49391 -21.24885 -20.76086 -19.70065 -18.54832 -18.07998 -17.67787 -17.59196 -17.06505 -16.72696 -16.56328 -16.50260 -16.36099 -16.20778 -15.81222 -15.57592 -15.08105 -15.04484 -14.43969 -14.32663 -14.07779 -13.83228 -13.76196 -13.65345 -13.40264 -13.10535 -13.00395 -12.81978 -12.78794 -12.76729 -12.43586 -12.39224 -12.21320 -12.04622 -11.96092 -11.87619 -11.52130 -10.92740 -10.90239 -10.76757 -10.47996 -10.40885 -10.18358 -10.09885 -10.02853 -8.12228 -6.24900 0.34045 1.27992 1.42470 1.44850 1.53189 2.12961 2.40950 2.42903 2.65748 2.95817 3.16844 3.31646 3.37887 3.42189 3.56251 3.68825 3.87412 4.18300 4.18614 4.21138 4.33841 4.37095 4.49976 4.52841 4.53408 4.55836 4.58140 4.70503 4.71823 4.76337 4.84869 4.88537 4.89544 4.95520 4.99952 5.03991 5.19671 5.25418 5.28294 5.32811 5.58912 5.63587 5.76227 5.95006 6.05787 6.27029 6.35530 6.41898 6.73815 6.82713 6.98100 7.44839 8.96000 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.018795 B = 0.002182 C = 0.002079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.414432 B =12831.850950 C =13467.307366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.048 3.952 3 O -0.384 6.384 4 C 0.051 3.949 5 H 0.094 0.906 6 C -0.155 4.155 7 C 0.117 3.883 8 H 0.116 0.884 9 N -0.666 5.666 10 C 0.521 3.479 11 O -0.536 6.536 12 C 0.497 3.503 13 O -0.554 6.554 14 N -0.674 5.674 15 C 0.177 3.823 16 C -0.001 4.001 17 C -0.509 4.509 18 H 0.057 0.943 19 C 0.026 3.974 20 N -0.904 5.904 21 Si 0.949 3.051 22 H -0.275 1.275 23 H -0.288 1.288 24 H -0.270 1.270 25 C -0.151 4.151 26 C -0.177 4.177 27 C 0.066 3.934 28 H 0.125 0.875 29 O -0.393 6.393 30 C 0.026 3.974 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.086 0.914 34 H 0.052 0.948 35 H 0.054 0.946 36 H 0.119 0.881 37 H 0.083 0.917 38 H 0.419 0.581 39 H 0.415 0.585 40 H 0.049 0.951 41 H 0.043 0.957 42 H 0.261 0.739 43 H 0.075 0.925 44 H 0.065 0.935 45 H 0.086 0.914 46 H 0.091 0.909 47 H 0.092 0.908 48 H 0.052 0.948 49 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.259 -1.425 0.521 27.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.029 4.029 3 O -0.304 6.304 4 C -0.007 4.007 5 H 0.112 0.888 6 C -0.194 4.194 7 C 0.012 3.988 8 H 0.134 0.866 9 N -0.318 5.318 10 C 0.301 3.699 11 O -0.413 6.413 12 C 0.277 3.723 13 O -0.433 6.433 14 N -0.324 5.324 15 C 0.054 3.946 16 C -0.002 4.002 17 C -0.547 4.547 18 H 0.075 0.925 19 C -0.175 4.175 20 N -0.541 5.541 21 Si 0.775 3.225 22 H -0.201 1.201 23 H -0.214 1.214 24 H -0.195 1.195 25 C -0.189 4.189 26 C -0.215 4.215 27 C 0.007 3.993 28 H 0.143 0.857 29 O -0.311 6.311 30 C -0.070 4.070 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.105 0.895 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.138 0.862 37 H 0.102 0.898 38 H 0.257 0.743 39 H 0.252 0.748 40 H 0.067 0.933 41 H 0.062 0.938 42 H 0.070 0.930 43 H 0.093 0.907 44 H 0.084 0.916 45 H 0.105 0.895 46 H 0.109 0.891 47 H 0.110 0.890 48 H 0.071 0.929 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -27.124 -1.486 0.343 27.167 hybrid contribution 0.982 0.362 -0.654 1.234 sum -26.141 -1.124 -0.310 26.168 Atomic orbital electron populations 1.21756 0.92665 1.03311 1.02838 1.22713 0.96467 0.83025 1.00657 1.87893 1.20068 1.27807 1.94584 1.24409 0.81655 0.98820 0.95841 0.88797 1.23780 0.97799 1.00803 0.96999 1.22266 0.82269 0.97960 0.96325 0.86603 1.45171 1.06080 1.34637 1.45895 1.19943 0.84905 0.83827 0.81177 1.90739 1.86282 1.28406 1.35877 1.20340 0.85576 0.85146 0.81212 1.90716 1.87095 1.26251 1.39275 1.45936 1.05512 1.34966 1.46025 1.20912 0.80864 0.94236 0.98621 1.19097 0.94994 0.97486 0.88644 1.20711 1.18613 0.91720 1.23640 0.92482 1.25669 0.98228 0.97850 0.95784 1.70100 1.27703 1.21406 1.34882 0.85698 0.79121 0.80221 0.77475 1.20058 1.21378 1.19453 1.22478 0.96114 0.94696 1.05624 1.22979 1.00708 1.01883 0.95887 1.24595 0.94200 0.98197 0.82304 0.85719 1.87927 1.49352 1.79327 1.14492 1.22974 0.96049 0.98633 0.89307 0.92005 0.92147 0.89534 0.92992 0.92746 0.86248 0.89795 0.74329 0.74822 0.93302 0.93820 0.93009 0.90653 0.91609 0.89547 0.89108 0.89001 0.92896 0.92849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 10.28 71.98 0.74 -0.69 16 2 C 0.05 0.60 6.50 71.98 0.47 1.07 16 3 O -0.38 -6.20 10.36 -148.98 -1.54 -7.74 16 4 C 0.05 0.82 4.02 31.12 0.13 0.94 16 5 H 0.09 1.54 7.87 -2.39 -0.02 1.52 16 6 C -0.16 -2.42 7.72 31.18 0.24 -2.18 16 7 C 0.12 2.29 4.28 45.58 0.20 2.49 16 8 H 0.12 2.37 7.47 -2.39 -0.02 2.36 16 9 N -0.67 -16.67 4.97 -441.09 -2.19 -18.86 16 10 C 0.52 16.44 7.89 87.27 0.69 17.13 16 11 O -0.54 -18.38 16.09 -3.24 -0.05 -18.43 16 12 C 0.50 18.43 7.88 87.27 0.69 19.12 16 13 O -0.55 -22.74 16.47 -3.24 -0.05 -22.79 16 14 N -0.67 -26.38 5.40 -464.43 -2.51 -28.89 16 15 C 0.18 8.05 5.71 86.38 0.49 8.55 16 16 C 0.00 -0.06 1.46 -52.93 -0.08 -0.14 16 17 C -0.51 -26.79 8.77 25.60 0.22 -26.56 16 18 H 0.06 2.98 7.82 -2.91 -0.02 2.96 16 19 C 0.03 1.38 5.40 84.66 0.46 1.83 16 20 N -0.90 -50.73 12.91 21.45 0.28 -50.45 16 21 Si 0.95 42.84 29.54 68.60 2.03 44.87 16 22 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 23 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 24 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 25 C -0.15 -6.78 9.38 30.60 0.29 -6.49 16 26 C -0.18 -7.07 9.50 30.60 0.29 -6.78 16 27 C 0.07 1.10 4.03 31.12 0.13 1.23 16 28 H 0.13 1.66 7.88 -2.39 -0.02 1.64 16 29 O -0.39 -7.78 10.01 -148.98 -1.49 -9.27 16 30 C 0.03 0.37 10.85 113.37 1.23 1.60 16 31 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 35 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 36 H 0.12 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.42 10.38 7.82 -92.71 -0.73 9.65 16 39 H 0.42 15.48 7.70 -92.71 -0.71 14.77 16 40 H 0.05 2.21 7.83 -2.38 -0.02 2.20 16 41 H 0.04 2.27 8.04 -2.39 -0.02 2.26 16 42 H 0.26 14.06 8.32 -92.71 -0.77 13.29 16 43 H 0.08 3.19 8.03 -2.38 -0.02 3.17 16 44 H 0.07 3.18 8.14 -2.39 -0.02 3.16 16 45 H 0.09 3.36 8.14 -2.39 -0.02 3.34 16 46 H 0.09 3.20 8.14 -2.39 -0.02 3.18 16 47 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 48 H 0.05 0.64 8.14 -2.38 -0.02 0.62 16 49 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 Total: -1.00 -63.77 415.35 0.17 -63.61 By element: Atomic # 1 Polarization: 37.32 SS G_CDS: -0.48 Total: 36.84 kcal Atomic # 6 Polarization: 4.94 SS G_CDS: 6.18 Total: 11.11 kcal Atomic # 7 Polarization: -93.78 SS G_CDS: -4.42 Total: -98.20 kcal Atomic # 8 Polarization: -55.09 SS G_CDS: -3.14 Total: -58.23 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.87 kcal Total: -63.77 0.17 -63.61 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324035465.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.962 kcal (2) G-P(sol) polarization free energy of solvation -63.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds