Wall clock time and date at job start Tue Mar 31 2020 23:05:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42901 * 109.47312 * 2 1 4 4 C 1.42900 * 114.00152 * 180.02562 * 3 2 1 5 5 H 1.08996 * 112.87017 * 20.33213 * 4 3 2 6 6 C 1.53889 * 113.63993 * 249.05444 * 4 3 2 7 7 C 1.54069 * 87.11233 * 220.51708 * 6 4 3 8 8 H 1.08997 * 113.56459 * 270.42234 * 7 6 4 9 9 N 1.46507 * 113.69751 * 139.45504 * 7 6 4 10 10 C 1.34773 * 120.00197 * 175.19519 * 9 7 6 11 11 O 1.21347 * 119.99893 * 0.02562 * 10 9 7 12 12 C 1.49450 * 119.99727 * 180.02562 * 10 9 7 13 13 O 1.21344 * 120.00354 * 0.02562 * 12 10 9 14 14 N 1.34782 * 119.99852 * 180.02562 * 12 10 9 15 15 C 1.46499 * 120.00073 * 180.02562 * 14 12 10 16 16 C 1.52998 * 109.47139 * 179.97438 * 15 14 12 17 17 C 1.50703 * 109.47113 * 179.97438 * 16 15 14 18 18 H 1.07995 * 119.99546 * 359.97438 * 17 16 15 19 19 C 1.37874 * 120.00019 * 180.02562 * 17 16 15 20 20 N 1.31516 * 120.00045 * 0.02562 * 19 17 16 21 21 Si 1.86794 * 119.99994 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47279 * 0.02562 * 21 19 17 23 23 H 1.48513 * 109.46878 * 120.00171 * 21 19 17 24 24 H 1.48493 * 109.47465 * 239.99843 * 21 19 17 25 25 C 1.53199 * 113.63864 * 151.61143 * 4 3 2 26 26 C 1.53840 * 114.62381 * 23.54732 * 25 4 3 27 27 C 1.55436 * 102.04834 * 208.54854 * 26 25 4 28 28 C 1.54998 * 101.01444 * 33.67044 * 27 26 25 29 29 O 1.42621 * 115.41246 * 256.70240 * 25 4 3 30 30 H 1.08994 * 109.47379 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47319 * 59.99487 * 1 2 3 32 32 H 1.09008 * 109.47090 * 299.99885 * 1 2 3 33 33 H 1.09000 * 109.47102 * 119.99781 * 2 1 3 34 34 H 1.09000 * 109.46795 * 240.00098 * 2 1 3 35 35 H 1.08994 * 113.59813 * 335.06100 * 6 4 3 36 36 H 1.08995 * 113.59592 * 105.91305 * 6 4 3 37 37 H 0.97007 * 119.99682 * 355.20300 * 9 7 6 38 38 H 0.96994 * 119.99923 * 359.97438 * 14 12 10 39 39 H 1.08999 * 109.46951 * 299.99669 * 15 14 12 40 40 H 1.08998 * 109.46996 * 59.99272 * 15 14 12 41 41 H 1.08999 * 109.47132 * 299.99807 * 16 15 14 42 42 H 1.09006 * 109.46756 * 59.99970 * 16 15 14 43 43 H 0.96999 * 120.00360 * 179.97438 * 20 19 17 44 44 H 1.09007 * 110.92032 * 326.73498 * 26 25 4 45 45 H 1.09003 * 110.91769 * 90.35847 * 26 25 4 46 46 H 1.09002 * 111.10910 * 275.73321 * 27 26 25 47 47 H 1.09001 * 111.11474 * 151.60551 * 27 26 25 48 48 H 1.09001 * 110.30156 * 204.94513 * 28 27 26 49 49 H 1.08998 * 110.38094 * 82.84070 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.9274 0.5548 -0.3499 6 6 4.0068 2.0110 1.3159 7 6 4.9852 2.8315 0.4537 8 1 5.9150 2.3078 0.2318 9 7 5.2011 4.1950 0.9442 10 6 6.1064 4.9921 0.3428 11 8 6.7424 4.5804 -0.6051 12 6 6.3270 6.3828 0.8436 13 8 5.6913 6.7943 1.7918 14 7 7.2320 7.1801 0.2419 15 6 7.4486 8.5432 0.7331 16 6 8.5197 9.2278 -0.1183 17 6 8.7421 10.6302 0.3866 18 1 8.1758 10.9966 1.2300 19 6 9.6678 11.4458 -0.2290 20 7 10.3563 11.0001 -1.2570 21 14 9.9429 13.1844 0.3964 22 1 9.0499 13.4409 1.5548 23 1 11.3581 13.3403 0.8188 24 1 9.6401 14.1538 -0.6869 25 6 3.9455 2.7395 -0.6679 26 6 2.9334 3.8977 -0.6993 27 6 3.3676 4.6734 -1.9744 28 6 3.8537 3.5110 -2.8771 29 8 4.4765 2.5738 -1.9811 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 0.5139 0.8901 33 1 1.8933 -0.5138 0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 3.3018 2.6232 1.8782 36 1 4.4942 1.2536 1.9296 37 1 4.6925 4.5242 1.7018 38 1 7.7403 6.8511 -0.5158 39 1 6.5172 9.1055 0.6670 40 1 7.7783 8.5071 1.7714 41 1 9.4510 8.6654 -0.0518 42 1 8.1902 9.2638 -1.1567 43 1 11.0073 11.5740 -1.6903 44 1 1.9151 3.5221 -0.8003 45 1 3.0298 4.5230 0.1883 46 1 4.1800 5.3662 -1.7549 47 1 2.5219 5.1930 -2.4249 48 1 4.5774 3.8755 -3.6061 49 1 3.0087 3.0452 -3.3842 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324454684.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:40 Heat of formation + Delta-G solvation = -166.506162 kcal Electronic energy + Delta-G solvation = -30353.613962 eV Core-core repulsion = 26087.598360 eV Total energy + Delta-G solvation = -4266.015602 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.35243 -41.24777 -39.45269 -38.76435 -37.30476 -36.73839 -34.93590 -34.19136 -33.06207 -31.73946 -31.67691 -28.55099 -27.72367 -26.22608 -24.34020 -24.15074 -23.64240 -22.93184 -22.75348 -21.42339 -20.40743 -19.45244 -18.59464 -18.23517 -18.03389 -17.60893 -17.20765 -16.95528 -16.53091 -16.50464 -16.37441 -16.18907 -15.92902 -15.56849 -15.01150 -14.67986 -14.48547 -14.46223 -14.31850 -14.09930 -13.58258 -13.30331 -13.25876 -13.13622 -12.96945 -12.92544 -12.81688 -12.59344 -12.51483 -12.30641 -12.27262 -12.24484 -12.10344 -11.75396 -11.69921 -11.65037 -11.42101 -11.10745 -10.66245 -10.62979 -10.49151 -10.22671 -9.99040 -8.24116 -6.35401 0.31151 1.26215 1.42056 1.43246 1.56258 2.09485 2.34471 2.43293 2.77789 3.02818 3.10883 3.21235 3.32688 3.41986 3.56369 3.60167 3.78534 3.97629 4.10203 4.22694 4.27571 4.31732 4.37472 4.42173 4.43929 4.55041 4.68281 4.71992 4.76851 4.79952 4.80757 4.82740 4.90201 4.94821 4.97602 5.06330 5.07968 5.16895 5.22101 5.31840 5.41461 5.53620 5.74538 5.88071 6.02306 6.12001 6.27980 6.34855 6.69780 6.79333 6.91906 7.34278 8.88096 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.026452 B = 0.002030 C = 0.001988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.273504 B =13791.903469 C =14083.716979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.049 3.951 3 O -0.380 6.380 4 C 0.073 3.927 5 H 0.106 0.894 6 C -0.137 4.137 7 C 0.117 3.883 8 H 0.110 0.890 9 N -0.673 5.673 10 C 0.514 3.486 11 O -0.530 6.530 12 C 0.500 3.500 13 O -0.547 6.547 14 N -0.689 5.689 15 C 0.138 3.862 16 C 0.018 3.982 17 C -0.543 4.543 18 H 0.065 0.935 19 C 0.004 3.996 20 N -0.928 5.928 21 Si 0.968 3.032 22 H -0.262 1.262 23 H -0.278 1.278 24 H -0.278 1.278 25 C 0.067 3.933 26 C -0.117 4.117 27 C -0.155 4.155 28 C 0.050 3.950 29 O -0.379 6.379 30 H 0.087 0.913 31 H 0.054 0.946 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.051 0.949 35 H 0.111 0.889 36 H 0.115 0.885 37 H 0.422 0.578 38 H 0.413 0.587 39 H 0.062 0.938 40 H 0.062 0.938 41 H 0.007 0.993 42 H 0.007 0.993 43 H 0.265 0.735 44 H 0.099 0.901 45 H 0.083 0.917 46 H 0.051 0.949 47 H 0.100 0.900 48 H 0.079 0.921 49 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.144 -24.733 2.976 32.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.027 4.027 3 O -0.299 6.299 4 C 0.014 3.986 5 H 0.124 0.876 6 C -0.175 4.175 7 C 0.012 3.988 8 H 0.128 0.872 9 N -0.327 5.327 10 C 0.294 3.706 11 O -0.406 6.406 12 C 0.280 3.720 13 O -0.426 6.426 14 N -0.340 5.340 15 C 0.016 3.984 16 C -0.020 4.020 17 C -0.582 4.582 18 H 0.084 0.916 19 C -0.195 4.195 20 N -0.568 5.568 21 Si 0.793 3.207 22 H -0.186 1.186 23 H -0.204 1.204 24 H -0.204 1.204 25 C 0.026 3.974 26 C -0.155 4.155 27 C -0.193 4.193 28 C -0.026 4.026 29 O -0.298 6.298 30 H 0.106 0.894 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.070 0.930 35 H 0.129 0.871 36 H 0.133 0.867 37 H 0.260 0.740 38 H 0.250 0.750 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.025 0.975 42 H 0.025 0.975 43 H 0.074 0.926 44 H 0.117 0.883 45 H 0.101 0.899 46 H 0.070 0.930 47 H 0.118 0.882 48 H 0.097 0.903 49 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -19.981 -24.672 2.795 31.871 hybrid contribution 0.727 1.042 -0.216 1.289 sum -19.255 -23.630 2.579 30.590 Atomic orbital electron populations 1.21759 0.93068 1.03247 1.02638 1.22725 0.96146 0.82897 1.00956 1.87903 1.19556 1.27908 1.94507 1.23672 0.82099 0.97667 0.95150 0.87603 1.23634 0.97182 0.99935 0.96770 1.22829 0.98972 0.81627 0.95355 0.87243 1.45550 1.39265 1.13314 1.34559 1.20007 0.81034 0.86103 0.83452 1.90794 1.47472 1.75052 1.27298 1.20361 0.81023 0.86897 0.83699 1.90713 1.48052 1.75800 1.27997 1.46083 1.39048 1.14599 1.34282 1.21478 0.99413 0.79267 0.98273 1.19185 0.93008 0.95003 0.94767 1.21475 1.22158 0.98555 1.16000 0.91649 1.25928 0.95320 1.03225 0.94992 1.70086 1.25573 1.38382 1.22731 0.85343 0.78124 0.78719 0.78524 1.18559 1.20399 1.20392 1.24200 0.93375 0.96289 0.83535 1.22598 0.99493 0.94703 0.98666 1.23252 1.01651 0.98006 0.96384 1.23472 0.97682 0.88714 0.92687 1.88333 1.64395 1.58597 1.18481 0.89450 0.92648 0.92037 0.91864 0.93045 0.87065 0.86707 0.73954 0.75045 0.91976 0.91977 0.97455 0.97462 0.92586 0.88295 0.89863 0.93018 0.88151 0.90284 0.90572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 10.28 71.98 0.74 -0.53 16 2 C 0.05 0.50 6.50 71.98 0.47 0.97 16 3 O -0.38 -5.63 8.94 -148.98 -1.33 -6.96 16 4 C 0.07 1.07 4.09 30.96 0.13 1.19 16 5 H 0.11 1.39 7.88 -2.39 -0.02 1.37 16 6 C -0.14 -1.59 7.44 31.26 0.23 -1.36 16 7 C 0.12 2.20 3.74 45.42 0.17 2.37 16 8 H 0.11 2.33 8.00 -2.39 -0.02 2.31 16 9 N -0.67 -14.67 3.97 -441.80 -1.75 -16.42 16 10 C 0.51 15.19 7.77 87.27 0.68 15.86 16 11 O -0.53 -18.23 16.38 -3.24 -0.05 -18.29 16 12 C 0.50 16.98 7.89 87.27 0.69 17.67 16 13 O -0.55 -19.98 16.48 -3.23 -0.05 -20.03 16 14 N -0.69 -25.41 5.55 -464.42 -2.58 -27.98 16 15 C 0.14 5.82 5.61 86.38 0.48 6.31 16 16 C 0.02 0.91 5.09 29.85 0.15 1.06 16 17 C -0.54 -30.07 9.11 25.60 0.23 -29.83 16 18 H 0.07 3.47 7.74 -2.91 -0.02 3.45 16 19 C 0.00 0.22 5.46 84.65 0.46 0.69 16 20 N -0.93 -55.01 13.29 21.45 0.28 -54.72 16 21 Si 0.97 43.46 29.54 68.60 2.03 45.48 16 22 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 23 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 24 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 25 C 0.07 1.33 1.61 -10.37 -0.02 1.32 16 26 C -0.12 -2.22 5.70 31.72 0.18 -2.04 16 27 C -0.16 -3.27 7.16 32.12 0.23 -3.04 16 28 C 0.05 1.09 7.79 72.67 0.57 1.66 16 29 O -0.38 -9.52 11.13 -148.98 -1.66 -11.18 16 30 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.06 0.55 8.14 -2.38 -0.02 0.53 16 33 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 34 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 35 H 0.11 1.15 8.10 -2.39 -0.02 1.13 16 36 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.42 7.84 7.96 -92.70 -0.74 7.10 16 38 H 0.41 14.88 7.94 -92.71 -0.74 14.14 16 39 H 0.06 2.62 8.14 -2.39 -0.02 2.60 16 40 H 0.06 2.63 8.14 -2.39 -0.02 2.61 16 41 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 42 H 0.01 0.38 8.14 -2.38 -0.02 0.36 16 43 H 0.27 14.75 8.31 -92.71 -0.77 13.98 16 44 H 0.10 1.76 7.03 -2.38 -0.02 1.74 16 45 H 0.08 1.56 6.83 -2.39 -0.02 1.54 16 46 H 0.05 1.35 8.02 -2.39 -0.02 1.33 16 47 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 48 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 49 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -69.02 405.49 -0.23 -69.25 By element: Atomic # 1 Polarization: 29.08 SS G_CDS: -0.51 Total: 28.57 kcal Atomic # 6 Polarization: 6.90 SS G_CDS: 5.40 Total: 12.29 kcal Atomic # 7 Polarization: -95.08 SS G_CDS: -4.04 Total: -99.13 kcal Atomic # 8 Polarization: -53.37 SS G_CDS: -3.10 Total: -56.46 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.48 kcal Total: -69.02 -0.23 -69.25 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324454684.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.261 kcal (2) G-P(sol) polarization free energy of solvation -69.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds