Wall clock time and date at job start Tue Mar 31 2020 23:51:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42898 * 114.00200 * 2 1 4 4 C 1.52996 * 109.47496 * 150.00307 * 3 2 1 5 5 C 1.53005 * 109.47130 * 180.02562 * 4 3 2 6 6 C 1.52996 * 109.46818 * 299.99466 * 5 4 3 7 7 N 1.46501 * 109.47043 * 180.02562 * 6 5 4 8 8 C 1.34780 * 119.99799 * 155.00284 * 7 6 5 9 9 O 1.21345 * 120.00306 * 359.97438 * 8 7 6 10 10 C 1.49452 * 119.99821 * 180.02562 * 8 7 6 11 11 O 1.21345 * 119.99873 * 359.97438 * 10 8 7 12 12 N 1.34771 * 120.00064 * 179.97438 * 10 8 7 13 13 C 1.47425 * 125.64767 * 359.68936 * 12 10 8 14 14 C 1.54910 * 104.83231 * 156.13676 * 13 12 10 15 15 C 1.55160 * 101.58122 * 37.00939 * 14 13 12 16 16 O 1.42904 * 110.71835 * 82.86029 * 15 14 13 17 17 C 1.50694 * 110.87022 * 206.06013 * 15 14 13 18 18 H 1.08000 * 120.00178 * 355.06896 * 17 15 14 19 19 C 1.37878 * 119.99901 * 175.06033 * 17 15 14 20 20 N 1.31514 * 120.00119 * 0.02562 * 19 17 15 21 21 Si 1.86800 * 120.00161 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47065 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47127 * 120.00206 * 21 19 17 24 24 H 1.48495 * 109.47513 * 240.00331 * 21 19 17 25 25 C 1.47026 * 125.65100 * 179.97438 * 12 10 8 26 26 C 1.53007 * 109.47177 * 60.00270 * 6 5 4 27 27 C 1.52994 * 109.46996 * 299.99964 * 26 6 5 28 28 H 1.09000 * 109.46931 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46786 * 299.99617 * 1 2 3 30 30 H 1.08994 * 109.47483 * 59.99823 * 1 2 3 31 31 H 1.09004 * 109.46987 * 29.99787 * 3 2 1 32 32 H 1.08999 * 109.47004 * 59.99881 * 4 3 2 33 33 H 1.09000 * 109.47065 * 299.99980 * 4 3 2 34 34 H 1.09002 * 109.46652 * 180.02562 * 5 4 3 35 35 H 1.08996 * 109.47190 * 59.99818 * 5 4 3 36 36 H 1.09007 * 109.47563 * 300.00663 * 6 5 4 37 37 H 0.96991 * 120.00032 * 335.00117 * 7 6 5 38 38 H 1.09001 * 110.36478 * 274.97629 * 13 12 10 39 39 H 1.08998 * 110.36859 * 37.30006 * 13 12 10 40 40 H 1.08991 * 111.00552 * 278.93287 * 14 13 12 41 41 H 1.09002 * 111.00267 * 155.08153 * 14 13 12 42 42 H 0.96696 * 113.99643 * 185.02224 * 16 15 14 43 43 H 0.96997 * 120.00198 * 179.97438 * 20 19 17 44 44 H 1.09004 * 109.87531 * 300.21113 * 25 12 10 45 45 H 1.08996 * 109.88343 * 61.21833 * 25 12 10 46 46 H 1.08999 * 109.46764 * 60.00028 * 26 6 5 47 47 H 1.09004 * 109.47155 * 179.97438 * 26 6 5 48 48 H 1.08999 * 109.47416 * 299.99665 * 27 26 6 49 49 H 1.09005 * 109.47118 * 179.97438 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.3589 1.2632 0.7211 5 6 3.9810 2.6612 0.7217 6 6 4.1883 3.1275 -0.7207 7 7 4.7844 4.4658 -0.7202 8 6 5.5091 4.8810 -1.7781 9 8 5.6681 4.1463 -2.7306 10 6 6.1177 6.2460 -1.7774 11 8 5.9590 6.9805 -0.8246 12 7 6.8427 6.6611 -2.8349 13 6 7.1191 5.8729 -4.0498 14 6 7.4140 6.9258 -5.1471 15 6 8.1877 8.0045 -4.3438 16 8 9.5676 7.6528 -4.2240 17 6 8.0387 9.3604 -4.9842 18 1 7.5185 9.4589 -5.9255 19 6 8.5665 10.4754 -4.3684 20 7 9.2003 10.3556 -3.2223 21 14 8.3813 12.1564 -5.1619 22 1 7.6327 12.0219 -6.4373 23 1 7.6381 13.0574 -4.2449 24 1 9.7253 12.7261 -5.4340 25 6 7.4940 7.9727 -2.9657 26 6 2.8396 3.1697 -1.4419 27 6 2.2176 1.7719 -1.4424 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.3450 1.9994 0.5138 32 1 4.0242 0.5693 0.2073 33 1 3.2112 0.9313 1.7488 34 1 4.9420 2.6309 1.2351 35 1 3.3156 3.3547 1.2357 36 1 4.8537 2.4339 -1.2348 37 1 4.6576 5.0529 0.0413 38 1 7.9869 5.2314 -3.8965 39 1 6.2483 5.2760 -4.3210 40 1 6.4895 7.3322 -5.5571 41 1 8.0372 6.5042 -5.9357 42 1 10.0797 8.2542 -3.6662 43 1 9.5719 11.1399 -2.7892 44 1 6.7472 8.7647 -2.9079 45 1 8.2319 8.1008 -2.1738 46 1 2.1742 3.8634 -0.9279 47 1 2.9872 3.5024 -2.4694 48 1 2.8829 1.0783 -1.9564 49 1 1.2565 1.8020 -1.9558 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326128211.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:51:21 Heat of formation + Delta-G solvation = -172.362197 kcal Electronic energy + Delta-G solvation = -30435.690872 eV Core-core repulsion = 26169.421333 eV Total energy + Delta-G solvation = -4266.269539 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.61412 -39.56070 -38.43969 -37.23808 -36.86835 -34.49665 -33.63271 -32.25783 -31.23041 -30.16171 -29.36528 -27.92479 -26.81027 -25.78808 -23.98107 -23.13616 -22.51869 -21.38254 -20.59199 -19.75734 -19.34679 -17.38125 -17.18318 -17.02930 -16.66431 -16.11014 -15.81921 -15.55395 -15.47383 -15.17784 -14.58804 -14.53964 -14.28197 -13.97722 -13.77972 -13.51218 -13.02867 -12.96607 -12.90463 -12.75680 -12.53243 -12.46884 -12.35085 -11.80370 -11.71065 -11.55424 -11.50921 -11.43714 -11.10056 -11.03397 -10.92880 -10.80518 -10.77381 -10.59615 -10.48222 -10.18143 -9.85267 -9.35595 -9.23775 -9.11035 -8.69464 -8.35243 -8.02691 -6.31690 -4.40060 1.76443 2.58721 3.18584 3.27535 3.31215 3.34176 3.56990 3.87097 4.25040 4.26684 4.33627 4.64098 4.67419 4.74766 4.81185 4.90148 4.96537 4.96753 4.99149 5.07815 5.10112 5.24734 5.33037 5.44287 5.49572 5.60720 5.67133 5.75737 5.78731 5.80535 5.86449 5.92739 5.98560 6.04453 6.20123 6.37764 6.51007 6.74309 6.80128 6.82908 6.83280 7.16814 7.21289 7.33003 7.70006 7.86319 8.01109 8.02292 8.41970 8.64380 9.26671 9.35543 10.76212 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.028338 B = 0.002108 C = 0.002094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.850332 B =13278.586512 C =13370.798466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.386 6.386 3 C 0.087 3.913 4 C -0.111 4.111 5 C -0.125 4.125 6 C 0.143 3.857 7 N -0.705 5.705 8 C 0.513 3.487 9 O -0.516 6.516 10 C 0.505 3.495 11 O -0.539 6.539 12 N -0.575 5.575 13 C 0.099 3.901 14 C -0.121 4.121 15 C 0.247 3.753 16 O -0.583 6.583 17 C -0.536 4.536 18 H 0.068 0.932 19 C 0.069 3.931 20 N -0.895 5.895 21 Si 0.904 3.096 22 H -0.271 1.271 23 H -0.282 1.282 24 H -0.281 1.281 25 C 0.101 3.899 26 C -0.129 4.129 27 C -0.136 4.136 28 H 0.085 0.915 29 H 0.040 0.960 30 H 0.041 0.959 31 H 0.062 0.938 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.072 0.928 36 H 0.094 0.906 37 H 0.411 0.589 38 H 0.068 0.932 39 H 0.087 0.913 40 H 0.077 0.923 41 H 0.078 0.922 42 H 0.382 0.618 43 H 0.270 0.730 44 H 0.072 0.928 45 H 0.071 0.929 46 H 0.066 0.934 47 H 0.075 0.925 48 H 0.075 0.925 49 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.273 -16.755 7.643 23.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.305 6.305 3 C 0.029 3.971 4 C -0.149 4.149 5 C -0.163 4.163 6 C 0.038 3.962 7 N -0.358 5.358 8 C 0.294 3.706 9 O -0.391 6.391 10 C 0.287 3.713 11 O -0.418 6.418 12 N -0.307 5.307 13 C -0.023 4.023 14 C -0.159 4.159 15 C 0.207 3.793 16 O -0.392 6.392 17 C -0.574 4.574 18 H 0.086 0.914 19 C -0.134 4.134 20 N -0.534 5.534 21 Si 0.732 3.268 22 H -0.196 1.196 23 H -0.208 1.208 24 H -0.207 1.207 25 C -0.020 4.020 26 C -0.167 4.167 27 C -0.175 4.175 28 H 0.103 0.897 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.080 0.920 32 H 0.095 0.905 33 H 0.093 0.907 34 H 0.098 0.902 35 H 0.091 0.909 36 H 0.112 0.888 37 H 0.247 0.753 38 H 0.086 0.914 39 H 0.105 0.895 40 H 0.095 0.905 41 H 0.097 0.903 42 H 0.232 0.768 43 H 0.080 0.920 44 H 0.091 0.909 45 H 0.089 0.911 46 H 0.085 0.915 47 H 0.094 0.906 48 H 0.094 0.906 49 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -14.236 -17.457 7.245 23.662 hybrid contribution -0.216 1.995 0.446 2.055 sum -14.452 -15.462 7.691 22.518 Atomic orbital electron populations 1.22783 0.81170 1.02684 0.99962 1.87908 1.19567 1.27919 1.95082 1.22225 0.94905 0.84361 0.95611 1.21503 0.95350 0.96792 1.01263 1.21783 1.02118 0.96703 0.95654 1.21093 0.94659 0.83829 0.96579 1.45824 1.52147 1.17176 1.20643 1.20428 0.79045 0.88115 0.82999 1.90697 1.59134 1.55753 1.33476 1.19586 0.81172 0.87210 0.83315 1.90722 1.60949 1.56098 1.34041 1.48718 1.47141 1.18367 1.16503 1.22640 1.01422 0.94264 0.84004 1.22817 1.00254 0.95865 0.96922 1.19531 0.79626 0.91912 0.88265 1.86131 1.22075 1.56855 1.74097 1.21542 1.37083 0.90983 1.07776 0.91354 1.25089 0.93930 0.99844 0.94511 1.69698 1.36564 1.31033 1.16071 0.86334 0.78027 0.83024 0.79451 1.19557 1.20791 1.20722 1.23227 0.96694 0.80477 1.01621 1.21901 0.95999 0.96793 1.02035 1.21974 1.01633 0.96821 0.97055 0.89698 0.94096 0.94021 0.92028 0.90540 0.90663 0.90201 0.90922 0.88803 0.75275 0.91378 0.89501 0.90473 0.90314 0.76799 0.92021 0.90943 0.91052 0.91494 0.90619 0.90610 0.91491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 10.82 101.05 1.09 1.28 16 2 O -0.39 -3.41 10.35 -35.23 -0.36 -3.78 16 3 C 0.09 0.66 2.61 -26.73 -0.07 0.59 16 4 C -0.11 -0.80 5.57 -26.73 -0.15 -0.95 16 5 C -0.12 -0.91 5.39 -26.73 -0.14 -1.06 16 6 C 0.14 1.41 2.45 -67.93 -0.17 1.24 16 7 N -0.70 -8.67 5.07 -54.23 -0.28 -8.95 16 8 C 0.51 8.33 7.82 -11.58 -0.09 8.24 16 9 O -0.52 -8.97 13.44 5.50 0.07 -8.90 16 10 C 0.51 9.94 7.91 -11.59 -0.09 9.85 16 11 O -0.54 -11.56 16.80 5.50 0.09 -11.47 16 12 N -0.58 -12.09 3.33 -171.03 -0.57 -12.66 16 13 C 0.10 1.91 6.05 -2.53 -0.02 1.89 16 14 C -0.12 -2.47 6.23 -24.58 -0.15 -2.62 16 15 C 0.25 5.96 0.85 -89.94 -0.08 5.88 16 16 O -0.58 -14.58 13.08 -35.23 -0.46 -15.04 16 17 C -0.54 -13.86 8.13 -34.44 -0.28 -14.14 16 18 H 0.07 1.75 7.78 -52.49 -0.41 1.34 16 19 C 0.07 1.79 5.28 -17.82 -0.09 1.70 16 20 N -0.89 -23.47 10.96 55.43 0.61 -22.86 16 21 Si 0.90 20.26 29.54 -169.99 -5.02 15.23 16 22 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 23 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 24 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 25 C 0.10 2.41 5.23 -3.07 -0.02 2.39 16 26 C -0.13 -1.19 5.50 -26.73 -0.15 -1.34 16 27 C -0.14 -1.12 5.54 -26.73 -0.15 -1.27 16 28 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.04 0.21 8.08 -51.93 -0.42 -0.21 16 30 H 0.04 0.23 7.87 -51.93 -0.41 -0.18 16 31 H 0.06 0.42 7.79 -51.93 -0.40 0.02 16 32 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.09 1.06 7.58 -51.93 -0.39 0.67 16 37 H 0.41 4.65 8.07 -40.82 -0.33 4.32 16 38 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 39 H 0.09 1.56 6.16 -51.93 -0.32 1.24 16 40 H 0.08 1.51 8.04 -51.93 -0.42 1.09 16 41 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 42 H 0.38 9.70 7.45 45.56 0.34 10.04 16 43 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 44 H 0.07 1.86 7.82 -51.93 -0.41 1.45 16 45 H 0.07 1.84 7.92 -51.93 -0.41 1.42 16 46 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 48 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 49 H 0.07 0.51 7.87 -51.93 -0.41 0.11 16 LS Contribution 391.44 15.07 5.90 5.90 Total: -1.00 -29.37 391.44 -7.92 -37.29 By element: Atomic # 1 Polarization: 20.91 SS G_CDS: -7.35 Total: 13.56 kcal Atomic # 6 Polarization: 12.23 SS G_CDS: -0.55 Total: 11.68 kcal Atomic # 7 Polarization: -44.23 SS G_CDS: -0.24 Total: -44.47 kcal Atomic # 8 Polarization: -38.53 SS G_CDS: -0.66 Total: -39.19 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.23 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -29.37 -7.92 -37.29 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326128211.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.075 kcal (2) G-P(sol) polarization free energy of solvation -29.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds