Wall clock time and date at job start Tue Mar 31 2020 22:47:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42908 * 109.47042 * 2 1 4 4 C 1.42903 * 113.99694 * 180.02562 * 3 2 1 5 5 C 1.53040 * 109.45958 * 150.00206 * 4 3 2 6 6 C 1.53184 * 109.31443 * 181.38693 * 5 4 3 7 7 N 1.46930 * 108.77222 * 305.36383 * 6 5 4 8 8 C 1.34778 * 120.62794 * 233.58689 * 7 6 5 9 9 O 1.21352 * 120.00017 * 8.75885 * 8 7 6 10 10 C 1.49456 * 119.99942 * 188.76341 * 8 7 6 11 11 O 1.21346 * 119.99505 * 6.81818 * 10 8 7 12 12 N 1.34777 * 120.00054 * 186.82491 * 10 8 7 13 13 C 1.47426 * 125.64884 * 0.02562 * 12 10 8 14 14 C 1.54902 * 104.83365 * 155.82687 * 13 12 10 15 15 C 1.55163 * 101.58085 * 37.01041 * 14 13 12 16 16 O 1.42902 * 110.71998 * 82.85867 * 15 14 13 17 17 C 1.50698 * 110.72030 * 205.95659 * 15 14 13 18 18 H 1.08000 * 120.00176 * 357.56203 * 17 15 14 19 19 C 1.37874 * 119.99952 * 177.55899 * 17 15 14 20 20 N 1.31518 * 120.00131 * 359.97438 * 19 17 15 21 21 Si 1.86808 * 120.00067 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47006 * 59.99739 * 21 19 17 23 23 H 1.48498 * 109.47184 * 179.97438 * 21 19 17 24 24 H 1.48495 * 109.46697 * 299.99625 * 21 19 17 25 25 C 1.47018 * 125.64911 * 179.97438 * 12 10 8 26 26 C 1.46922 * 118.74269 * 53.86121 * 7 6 5 27 27 C 1.53035 * 109.45635 * 270.06868 * 4 3 2 28 28 H 1.09003 * 109.47030 * 179.97438 * 1 2 3 29 29 H 1.09010 * 109.47045 * 299.99961 * 1 2 3 30 30 H 1.08999 * 109.47593 * 59.99329 * 1 2 3 31 31 H 1.08996 * 109.47035 * 240.00083 * 2 1 3 32 32 H 1.09003 * 109.47247 * 120.00009 * 2 1 3 33 33 H 1.09002 * 109.44740 * 30.03570 * 4 3 2 34 34 H 1.09000 * 109.49845 * 61.43032 * 5 4 3 35 35 H 1.09007 * 109.49447 * 301.33986 * 5 4 3 36 36 H 1.09001 * 109.58615 * 185.58202 * 6 5 4 37 37 H 1.08994 * 109.58751 * 65.14969 * 6 5 4 38 38 H 1.09002 * 110.36726 * 36.98837 * 13 12 10 39 39 H 1.09003 * 110.46014 * 274.71839 * 13 12 10 40 40 H 1.08993 * 111.00750 * 278.93931 * 14 13 12 41 41 H 1.09002 * 111.03820 * 155.09592 * 14 13 12 42 42 H 0.96699 * 113.99589 * 180.02562 * 16 15 14 43 43 H 0.96998 * 119.99613 * 179.97438 * 20 19 17 44 44 H 1.09003 * 109.88045 * 61.68956 * 25 12 10 45 45 H 1.08997 * 109.88119 * 300.52351 * 25 12 10 46 46 H 1.09001 * 109.58605 * 65.92211 * 26 7 6 47 47 H 1.08994 * 109.59351 * 186.35150 * 26 7 6 48 48 H 1.09003 * 109.50220 * 298.56135 * 27 4 3 49 49 H 1.08996 * 109.50274 * 58.66720 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.8402 2.7463 -0.7220 6 6 5.3685 2.8465 -0.7511 7 7 5.8756 2.7381 0.6237 8 6 6.6984 3.6789 1.1282 9 8 6.9009 4.7029 0.5093 10 6 7.3614 3.4610 2.4498 11 8 7.2590 2.3897 3.0105 12 7 8.0728 4.4543 3.0188 13 6 8.2773 5.7992 2.4505 14 6 8.5788 6.7038 3.6713 15 6 9.4213 5.7535 4.5627 16 8 10.7890 5.7519 4.1484 17 6 9.3064 6.1424 6.0141 18 1 8.7271 7.0090 6.2967 19 6 9.9406 5.3919 6.9812 20 7 10.6456 4.3363 6.6372 21 14 9.7975 5.8736 8.7804 22 1 8.3695 5.8500 9.1871 23 1 10.5647 4.9125 9.6127 24 1 10.3442 7.2410 8.9716 25 6 8.7725 4.3764 4.3094 26 6 5.4738 1.5816 1.4359 27 6 3.9398 1.4984 1.4422 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.8627 0.6018 -0.5154 34 1 3.4291 3.6064 -0.1936 35 1 3.4572 2.7286 -1.7424 36 1 5.6637 3.8063 -1.1748 37 1 5.7763 2.0366 -1.3559 38 1 7.3747 6.1372 1.9416 39 1 9.1221 5.7973 1.7618 40 1 7.6587 6.9989 4.1756 41 1 9.1582 7.5787 3.3764 42 1 11.3583 5.1730 4.6736 43 1 11.0921 3.8085 7.3176 44 1 9.5424 3.6059 4.2678 45 1 8.0611 4.1500 5.1036 46 1 5.8901 0.6707 1.0057 47 1 5.8386 1.7066 2.4553 48 1 3.5279 2.3704 1.9503 49 1 3.6279 0.5927 1.9622 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326493024.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:31 Heat of formation + Delta-G solvation = -147.628885 kcal Electronic energy + Delta-G solvation = -30917.585474 eV Core-core repulsion = 26652.388452 eV Total energy + Delta-G solvation = -4265.197022 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -40.80184 -39.27225 -38.32733 -37.39378 -36.58841 -34.37210 -32.67483 -32.23672 -31.32035 -30.69466 -30.21190 -27.98279 -26.34923 -25.04973 -23.77033 -23.38726 -22.84893 -21.87029 -20.54809 -19.61971 -18.98584 -17.26314 -17.25223 -16.89412 -16.69952 -16.03743 -15.83499 -15.46840 -15.24785 -14.87808 -14.67906 -14.53249 -14.27797 -14.01905 -13.73201 -13.29833 -13.06993 -13.04262 -12.89304 -12.67840 -12.48569 -12.37530 -12.21715 -12.14368 -11.77853 -11.57414 -11.44493 -11.41307 -11.32990 -11.09230 -10.90471 -10.77207 -10.65100 -10.59037 -10.53820 -10.18021 -9.75369 -9.34474 -8.91351 -8.82455 -8.68074 -8.37110 -8.06213 -6.33594 -4.42505 1.70970 2.50105 3.20190 3.25783 3.27952 3.29413 3.50741 3.69769 4.23179 4.40529 4.53893 4.59986 4.73743 4.78813 4.87010 4.94339 4.94635 5.03576 5.07745 5.10405 5.30412 5.44043 5.46451 5.51810 5.54141 5.60536 5.68998 5.76926 5.79776 5.83941 5.87566 5.96892 6.01629 6.06956 6.25179 6.37579 6.48694 6.73737 6.79056 6.81763 6.96988 7.10708 7.17471 7.28884 7.68392 7.75176 7.96650 8.00297 8.37207 8.61343 9.26120 9.36522 10.74016 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.018278 B = 0.002523 C = 0.002340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.500776 B =11094.484758 C =11961.798526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.056 3.944 3 O -0.383 6.383 4 C 0.090 3.910 5 C -0.129 4.129 6 C 0.112 3.888 7 N -0.590 5.590 8 C 0.514 3.486 9 O -0.517 6.517 10 C 0.508 3.492 11 O -0.530 6.530 12 N -0.571 5.571 13 C 0.101 3.899 14 C -0.121 4.121 15 C 0.248 3.752 16 O -0.584 6.584 17 C -0.537 4.537 18 H 0.068 0.932 19 C 0.070 3.930 20 N -0.896 5.896 21 Si 0.905 3.095 22 H -0.275 1.275 23 H -0.285 1.285 24 H -0.274 1.274 25 C 0.099 3.901 26 C 0.072 3.928 27 C -0.155 4.155 28 H 0.069 0.931 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.047 0.953 32 H 0.048 0.952 33 H 0.061 0.939 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.100 0.900 37 H 0.071 0.929 38 H 0.083 0.917 39 H 0.071 0.929 40 H 0.077 0.923 41 H 0.079 0.921 42 H 0.384 0.616 43 H 0.272 0.728 44 H 0.072 0.928 45 H 0.073 0.927 46 H 0.067 0.933 47 H 0.149 0.851 48 H 0.075 0.925 49 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.129 -7.790 -13.443 21.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.303 6.303 4 C 0.032 3.968 5 C -0.167 4.167 6 C -0.010 4.010 7 N -0.325 5.325 8 C 0.297 3.703 9 O -0.393 6.393 10 C 0.291 3.709 11 O -0.411 6.411 12 N -0.302 5.302 13 C -0.021 4.021 14 C -0.159 4.159 15 C 0.208 3.792 16 O -0.393 6.393 17 C -0.576 4.576 18 H 0.086 0.914 19 C -0.133 4.133 20 N -0.535 5.535 21 Si 0.732 3.268 22 H -0.200 1.200 23 H -0.211 1.211 24 H -0.199 1.199 25 C -0.022 4.022 26 C -0.049 4.049 27 C -0.194 4.194 28 H 0.088 0.912 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.079 0.921 34 H 0.096 0.904 35 H 0.100 0.900 36 H 0.119 0.881 37 H 0.089 0.911 38 H 0.101 0.899 39 H 0.089 0.911 40 H 0.095 0.905 41 H 0.098 0.902 42 H 0.236 0.764 43 H 0.082 0.918 44 H 0.090 0.910 45 H 0.092 0.908 46 H 0.085 0.915 47 H 0.166 0.834 48 H 0.094 0.906 49 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -14.318 -7.398 -13.869 21.262 hybrid contribution 0.235 -0.720 1.333 1.533 sum -14.083 -8.118 -12.536 20.528 Atomic orbital electron populations 1.21745 0.93821 1.02165 1.03132 1.22496 0.95533 0.84012 1.00004 1.87930 1.20973 1.26291 1.95095 1.22130 0.80957 0.97996 0.95718 1.21967 0.95236 0.97935 1.01554 1.21662 0.92722 1.04011 0.82647 1.47946 1.46388 1.23957 1.14190 1.20343 0.79760 0.83146 0.87046 1.90700 1.61816 1.25632 1.61122 1.19588 0.81219 0.84295 0.85826 1.90430 1.61407 1.24729 1.64558 1.48736 1.46582 1.12614 1.22234 1.22604 1.01752 0.81121 0.96625 1.22836 1.00063 0.98045 0.94996 1.19496 0.79993 0.87696 0.92055 1.86110 1.20570 1.70838 1.61799 1.21481 1.32703 1.12980 0.90402 0.91402 1.25089 0.94073 0.94159 0.99989 1.69628 1.32337 1.16635 1.34889 0.86433 0.78413 0.78496 0.83430 1.20003 1.21057 1.19933 1.23268 0.95828 1.02432 0.80678 1.22953 0.93305 0.87402 1.01271 1.22543 0.96186 1.03511 0.97145 0.91193 0.91804 0.91937 0.93521 0.93332 0.92074 0.90420 0.89993 0.88129 0.91056 0.89917 0.91116 0.90475 0.90228 0.76436 0.91827 0.90992 0.90843 0.91482 0.83419 0.90630 0.90521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 10.28 37.16 0.38 -0.62 16 2 C 0.06 0.44 6.47 37.16 0.24 0.68 16 3 O -0.38 -4.00 9.99 -35.23 -0.35 -4.35 16 4 C 0.09 0.87 2.57 -26.69 -0.07 0.80 16 5 C -0.13 -1.24 5.73 -26.62 -0.15 -1.39 16 6 C 0.11 1.19 6.44 -3.71 -0.02 1.17 16 7 N -0.59 -8.05 2.97 -173.01 -0.51 -8.57 16 8 C 0.51 8.70 7.68 -11.58 -0.09 8.61 16 9 O -0.52 -9.32 13.33 5.50 0.07 -9.24 16 10 C 0.51 9.90 7.77 -11.58 -0.09 9.81 16 11 O -0.53 -10.83 13.51 5.50 0.07 -10.76 16 12 N -0.57 -11.87 3.33 -171.03 -0.57 -12.44 16 13 C 0.10 1.94 5.95 -2.53 -0.02 1.93 16 14 C -0.12 -2.46 6.22 -24.58 -0.15 -2.62 16 15 C 0.25 5.93 0.86 -89.94 -0.08 5.85 16 16 O -0.58 -14.57 13.09 -35.23 -0.46 -15.03 16 17 C -0.54 -13.74 8.12 -34.44 -0.28 -14.02 16 18 H 0.07 1.71 7.77 -52.49 -0.41 1.30 16 19 C 0.07 1.79 5.27 -17.82 -0.09 1.69 16 20 N -0.90 -23.22 10.97 55.43 0.61 -22.61 16 21 Si 0.91 20.04 29.54 -169.99 -5.02 15.02 16 22 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 23 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 24 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 25 C 0.10 2.32 5.39 -3.07 -0.02 2.30 16 26 C 0.07 0.90 6.01 -3.48 -0.02 0.88 16 27 C -0.16 -1.66 5.71 -26.38 -0.15 -1.81 16 28 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.46 8.14 -51.92 -0.42 0.03 16 30 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.05 0.32 8.08 -51.93 -0.42 -0.10 16 32 H 0.05 0.36 7.84 -51.93 -0.41 -0.05 16 33 H 0.06 0.52 7.79 -51.93 -0.40 0.11 16 34 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.10 1.14 7.01 -51.93 -0.36 0.78 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.08 1.49 6.36 -51.93 -0.33 1.16 16 39 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 40 H 0.08 1.49 8.04 -51.93 -0.42 1.08 16 41 H 0.08 1.54 8.14 -51.93 -0.42 1.11 16 42 H 0.38 9.79 7.18 45.56 0.33 10.12 16 43 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 44 H 0.07 1.82 8.01 -51.93 -0.42 1.41 16 45 H 0.07 1.84 7.82 -51.93 -0.41 1.43 16 46 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 47 H 0.15 2.26 4.31 -54.81 -0.24 2.02 16 48 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 49 H 0.08 0.73 7.84 -51.93 -0.41 0.32 16 LS Contribution 386.27 15.07 5.82 5.82 Total: -1.00 -28.19 386.27 -8.20 -36.39 By element: Atomic # 1 Polarization: 19.76 SS G_CDS: -7.25 Total: 12.51 kcal Atomic # 6 Polarization: 13.87 SS G_CDS: -0.61 Total: 13.26 kcal Atomic # 7 Polarization: -43.14 SS G_CDS: -0.47 Total: -43.62 kcal Atomic # 8 Polarization: -38.71 SS G_CDS: -0.67 Total: -39.38 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.02 Total: 15.02 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -28.19 -8.20 -36.39 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326493024.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.240 kcal (2) G-P(sol) polarization free energy of solvation -28.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds