Wall clock time and date at job start Tue Mar 31 2020 22:47:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42908 * 109.47042 * 2 1 4 4 C 1.42903 * 113.99694 * 180.02562 * 3 2 1 5 5 C 1.53040 * 109.45958 * 150.00206 * 4 3 2 6 6 C 1.53184 * 109.31443 * 181.38693 * 5 4 3 7 7 N 1.46930 * 108.77222 * 305.36383 * 6 5 4 8 8 C 1.34778 * 120.62794 * 233.58689 * 7 6 5 9 9 O 1.21352 * 120.00017 * 8.75885 * 8 7 6 10 10 C 1.49456 * 119.99942 * 188.76341 * 8 7 6 11 11 O 1.21346 * 119.99505 * 6.81818 * 10 8 7 12 12 N 1.34777 * 120.00054 * 186.82491 * 10 8 7 13 13 C 1.47426 * 125.64884 * 0.02562 * 12 10 8 14 14 C 1.54902 * 104.83365 * 155.82687 * 13 12 10 15 15 C 1.55163 * 101.58085 * 37.01041 * 14 13 12 16 16 O 1.42902 * 110.71998 * 82.85867 * 15 14 13 17 17 C 1.50698 * 110.72030 * 205.95659 * 15 14 13 18 18 H 1.08000 * 120.00176 * 357.56203 * 17 15 14 19 19 C 1.37874 * 119.99952 * 177.55899 * 17 15 14 20 20 N 1.31518 * 120.00131 * 359.97438 * 19 17 15 21 21 Si 1.86808 * 120.00067 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47006 * 59.99739 * 21 19 17 23 23 H 1.48498 * 109.47184 * 179.97438 * 21 19 17 24 24 H 1.48495 * 109.46697 * 299.99625 * 21 19 17 25 25 C 1.47018 * 125.64911 * 179.97438 * 12 10 8 26 26 C 1.46922 * 118.74269 * 53.86121 * 7 6 5 27 27 C 1.53035 * 109.45635 * 270.06868 * 4 3 2 28 28 H 1.09003 * 109.47030 * 179.97438 * 1 2 3 29 29 H 1.09010 * 109.47045 * 299.99961 * 1 2 3 30 30 H 1.08999 * 109.47593 * 59.99329 * 1 2 3 31 31 H 1.08996 * 109.47035 * 240.00083 * 2 1 3 32 32 H 1.09003 * 109.47247 * 120.00009 * 2 1 3 33 33 H 1.09002 * 109.44740 * 30.03570 * 4 3 2 34 34 H 1.09000 * 109.49845 * 61.43032 * 5 4 3 35 35 H 1.09007 * 109.49447 * 301.33986 * 5 4 3 36 36 H 1.09001 * 109.58615 * 185.58202 * 6 5 4 37 37 H 1.08994 * 109.58751 * 65.14969 * 6 5 4 38 38 H 1.09002 * 110.36726 * 36.98837 * 13 12 10 39 39 H 1.09003 * 110.46014 * 274.71839 * 13 12 10 40 40 H 1.08993 * 111.00750 * 278.93931 * 14 13 12 41 41 H 1.09002 * 111.03820 * 155.09592 * 14 13 12 42 42 H 0.96699 * 113.99589 * 180.02562 * 16 15 14 43 43 H 0.96998 * 119.99613 * 179.97438 * 20 19 17 44 44 H 1.09003 * 109.88045 * 61.68956 * 25 12 10 45 45 H 1.08997 * 109.88119 * 300.52351 * 25 12 10 46 46 H 1.09001 * 109.58605 * 65.92211 * 26 7 6 47 47 H 1.08994 * 109.59351 * 186.35150 * 26 7 6 48 48 H 1.09003 * 109.50220 * 298.56135 * 27 4 3 49 49 H 1.08996 * 109.50274 * 58.66720 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.8402 2.7463 -0.7220 6 6 5.3685 2.8465 -0.7511 7 7 5.8756 2.7381 0.6237 8 6 6.6984 3.6789 1.1282 9 8 6.9009 4.7029 0.5093 10 6 7.3614 3.4610 2.4498 11 8 7.2590 2.3897 3.0105 12 7 8.0728 4.4543 3.0188 13 6 8.2773 5.7992 2.4505 14 6 8.5788 6.7038 3.6713 15 6 9.4213 5.7535 4.5627 16 8 10.7890 5.7519 4.1484 17 6 9.3064 6.1424 6.0141 18 1 8.7271 7.0090 6.2967 19 6 9.9406 5.3919 6.9812 20 7 10.6456 4.3363 6.6372 21 14 9.7975 5.8736 8.7804 22 1 8.3695 5.8500 9.1871 23 1 10.5647 4.9125 9.6127 24 1 10.3442 7.2410 8.9716 25 6 8.7725 4.3764 4.3094 26 6 5.4738 1.5816 1.4359 27 6 3.9398 1.4984 1.4422 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.8627 0.6018 -0.5154 34 1 3.4291 3.6064 -0.1936 35 1 3.4572 2.7286 -1.7424 36 1 5.6637 3.8063 -1.1748 37 1 5.7763 2.0366 -1.3559 38 1 7.3747 6.1372 1.9416 39 1 9.1221 5.7973 1.7618 40 1 7.6587 6.9989 4.1756 41 1 9.1582 7.5787 3.3764 42 1 11.3583 5.1730 4.6736 43 1 11.0921 3.8085 7.3176 44 1 9.5424 3.6059 4.2678 45 1 8.0611 4.1500 5.1036 46 1 5.8901 0.6707 1.0057 47 1 5.8386 1.7066 2.4553 48 1 3.5279 2.3704 1.9503 49 1 3.6279 0.5927 1.9622 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326493024.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:30 Heat of formation + Delta-G solvation = -167.127658 kcal Electronic energy + Delta-G solvation = -30918.431004 eV Core-core repulsion = 26652.388452 eV Total energy + Delta-G solvation = -4266.042552 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.14369 -40.50090 -39.50557 -39.01446 -37.65545 -36.12504 -34.21207 -33.55057 -32.21935 -31.92038 -31.41430 -29.76485 -27.90906 -26.47956 -24.82236 -24.60765 -23.65169 -23.09954 -21.70026 -21.35476 -20.27934 -19.17189 -18.34199 -18.25375 -17.78941 -17.47416 -17.06310 -16.86582 -16.50413 -16.31638 -15.88180 -15.67079 -15.56638 -14.96534 -14.88963 -14.81113 -14.73289 -14.61179 -14.05133 -13.96202 -13.55853 -13.52231 -13.43658 -13.31555 -12.96450 -12.90562 -12.84945 -12.61882 -12.41749 -12.35675 -12.31021 -12.24808 -12.12158 -12.08557 -11.74930 -11.53285 -11.17961 -10.69457 -10.57066 -10.37643 -10.13705 -9.96508 -9.70731 -8.27753 -6.43752 0.27189 1.17816 1.44274 1.44876 1.52685 2.01882 2.29054 2.39313 2.67159 2.98014 3.06776 3.68213 3.75835 3.80359 3.96448 4.03014 4.04774 4.13470 4.19284 4.23715 4.30287 4.32686 4.37191 4.45118 4.51746 4.59670 4.63999 4.70027 4.76297 4.84775 4.88743 4.92874 4.97834 5.02528 5.06740 5.08074 5.12567 5.18138 5.30031 5.30930 5.36025 5.45644 5.72370 5.90105 6.01090 6.27995 6.30710 6.54589 6.64746 6.85637 7.27341 7.35569 8.78369 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.018278 B = 0.002523 C = 0.002340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.500776 B =11094.484758 C =11961.798526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.048 3.952 3 O -0.401 6.401 4 C 0.092 3.908 5 C -0.122 4.122 6 C 0.110 3.890 7 N -0.580 5.580 8 C 0.516 3.484 9 O -0.531 6.531 10 C 0.502 3.498 11 O -0.544 6.544 12 N -0.582 5.582 13 C 0.112 3.888 14 C -0.115 4.115 15 C 0.234 3.766 16 O -0.588 6.588 17 C -0.558 4.558 18 H 0.068 0.932 19 C 0.028 3.972 20 N -0.915 5.915 21 Si 0.964 3.036 22 H -0.272 1.272 23 H -0.283 1.283 24 H -0.270 1.270 25 C 0.118 3.882 26 C 0.073 3.927 27 C -0.148 4.148 28 H 0.088 0.912 29 H 0.053 0.947 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.052 0.948 33 H 0.083 0.917 34 H 0.059 0.941 35 H 0.104 0.896 36 H 0.095 0.905 37 H 0.100 0.900 38 H 0.099 0.901 39 H 0.069 0.931 40 H 0.085 0.915 41 H 0.091 0.909 42 H 0.378 0.622 43 H 0.272 0.728 44 H 0.044 0.956 45 H 0.049 0.951 46 H 0.088 0.912 47 H 0.120 0.880 48 H 0.055 0.945 49 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.599 -8.433 -14.860 23.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.028 4.028 3 O -0.321 6.321 4 C 0.034 3.966 5 C -0.161 4.161 6 C -0.010 4.010 7 N -0.313 5.313 8 C 0.298 3.702 9 O -0.408 6.408 10 C 0.286 3.714 11 O -0.425 6.425 12 N -0.313 5.313 13 C -0.010 4.010 14 C -0.153 4.153 15 C 0.193 3.807 16 O -0.397 6.397 17 C -0.596 4.596 18 H 0.086 0.914 19 C -0.173 4.173 20 N -0.554 5.554 21 Si 0.789 3.211 22 H -0.198 1.198 23 H -0.208 1.208 24 H -0.195 1.195 25 C -0.005 4.005 26 C -0.048 4.048 27 C -0.187 4.187 28 H 0.107 0.893 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.071 0.929 33 H 0.101 0.899 34 H 0.077 0.923 35 H 0.123 0.877 36 H 0.113 0.887 37 H 0.118 0.882 38 H 0.117 0.883 39 H 0.087 0.913 40 H 0.104 0.896 41 H 0.109 0.891 42 H 0.229 0.771 43 H 0.082 0.918 44 H 0.063 0.937 45 H 0.068 0.932 46 H 0.107 0.893 47 H 0.137 0.863 48 H 0.074 0.926 49 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -15.828 -8.062 -15.319 23.456 hybrid contribution 0.620 -0.633 1.743 1.956 sum -15.207 -8.696 -13.576 22.163 Atomic orbital electron populations 1.21767 0.93211 1.03246 1.02551 1.22707 0.96136 0.83027 1.00911 1.87919 1.21124 1.27970 1.95128 1.22114 0.81027 0.98723 0.94713 1.21916 0.94175 0.97303 1.02662 1.21928 0.93494 1.04928 0.80699 1.48073 1.44738 1.23100 1.15427 1.19787 0.80607 0.83891 0.85868 1.90689 1.62841 1.26260 1.61054 1.20246 0.80667 0.83708 0.86783 1.90455 1.61515 1.25200 1.65329 1.48762 1.47186 1.13762 1.21628 1.22571 1.02400 0.80062 0.95961 1.22833 0.99816 0.97920 0.94721 1.19702 0.79785 0.88738 0.92446 1.86101 1.21185 1.70675 1.61737 1.21766 1.33019 1.13202 0.91571 0.91367 1.25797 0.93802 0.94111 1.03597 1.69726 1.32665 1.17184 1.35821 0.85509 0.78310 0.78211 0.79030 1.19758 1.20842 1.19481 1.22767 0.94573 1.01510 0.81601 1.22881 0.94649 0.87612 0.99706 1.22469 0.94529 1.03287 0.98409 0.89313 0.92767 0.92127 0.92027 0.92932 0.89943 0.92253 0.87734 0.88669 0.88187 0.88304 0.91282 0.89617 0.89091 0.77140 0.91845 0.93749 0.93237 0.89343 0.86281 0.92589 0.89198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 10.28 71.98 0.74 -0.96 16 2 C 0.05 0.63 6.47 71.98 0.47 1.10 16 3 O -0.40 -7.46 9.99 -148.98 -1.49 -8.94 16 4 C 0.09 1.53 2.57 30.62 0.08 1.60 16 5 C -0.12 -2.04 5.73 30.67 0.18 -1.86 16 6 C 0.11 2.06 6.44 86.36 0.56 2.61 16 7 N -0.58 -14.97 2.97 -819.64 -2.43 -17.40 16 8 C 0.52 17.16 7.68 87.27 0.67 17.83 16 9 O -0.53 -18.62 13.33 -3.25 -0.04 -18.66 16 10 C 0.50 19.82 7.77 87.27 0.68 20.50 16 11 O -0.54 -22.73 13.51 -3.24 -0.04 -22.78 16 12 N -0.58 -24.64 3.33 -813.38 -2.71 -27.34 16 13 C 0.11 4.26 5.95 86.85 0.52 4.77 16 14 C -0.12 -4.64 6.22 31.99 0.20 -4.44 16 15 C 0.23 11.36 0.86 -10.35 -0.01 11.35 16 16 O -0.59 -29.97 13.09 -148.98 -1.95 -31.92 16 17 C -0.56 -28.86 8.12 25.60 0.21 -28.66 16 18 H 0.07 3.44 7.77 -2.91 -0.02 3.42 16 19 C 0.03 1.44 5.27 84.65 0.45 1.89 16 20 N -0.91 -48.46 10.97 21.45 0.24 -48.22 16 21 Si 0.96 41.25 29.54 68.60 2.03 43.28 16 22 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 23 H -0.28 -11.92 7.11 99.48 0.71 -11.22 16 24 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 25 C 0.12 5.74 5.39 86.73 0.47 6.20 16 26 C 0.07 1.72 6.01 86.51 0.52 2.24 16 27 C -0.15 -2.95 5.71 30.82 0.18 -2.77 16 28 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.05 0.71 8.14 -2.38 -0.02 0.69 16 30 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.06 0.63 8.08 -2.39 -0.02 0.61 16 32 H 0.05 0.64 7.84 -2.39 -0.02 0.62 16 33 H 0.08 1.05 7.79 -2.39 -0.02 1.03 16 34 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.10 1.32 8.14 -2.38 -0.02 1.30 16 36 H 0.09 1.95 7.01 -2.39 -0.02 1.93 16 37 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.10 3.47 6.36 -2.39 -0.02 3.45 16 39 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 40 H 0.09 3.27 8.04 -2.39 -0.02 3.25 16 41 H 0.09 3.43 8.14 -2.39 -0.02 3.41 16 42 H 0.38 19.92 7.18 -74.06 -0.53 19.39 16 43 H 0.27 13.81 8.31 -92.71 -0.77 13.04 16 44 H 0.04 2.36 8.01 -2.39 -0.02 2.34 16 45 H 0.05 2.59 7.82 -2.39 -0.02 2.57 16 46 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 47 H 0.12 3.64 4.31 -47.98 -0.21 3.43 16 48 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 49 H 0.09 1.54 7.84 -2.39 -0.02 1.52 16 Total: -1.00 -61.33 386.27 -0.28 -61.61 By element: Atomic # 1 Polarization: 38.75 SS G_CDS: 0.23 Total: 38.98 kcal Atomic # 6 Polarization: 25.53 SS G_CDS: 5.89 Total: 31.42 kcal Atomic # 7 Polarization: -88.07 SS G_CDS: -4.90 Total: -92.97 kcal Atomic # 8 Polarization: -78.78 SS G_CDS: -3.53 Total: -82.31 kcal Atomic # 14 Polarization: 41.25 SS G_CDS: 2.03 Total: 43.28 kcal Total: -61.33 -0.28 -61.61 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326493024.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.521 kcal (2) G-P(sol) polarization free energy of solvation -61.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds