Wall clock time and date at job start Tue Mar 31 2020 22:47:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42898 * 109.47310 * 2 1 4 4 C 1.42903 * 113.99986 * 179.97438 * 3 2 1 5 5 C 1.53042 * 109.45858 * 209.99967 * 4 3 2 6 6 C 1.53194 * 109.31074 * 178.61460 * 5 4 3 7 7 N 1.46922 * 108.77593 * 54.63788 * 6 5 4 8 8 C 1.34780 * 120.63094 * 126.36053 * 7 6 5 9 9 O 1.21341 * 120.00140 * 1.90636 * 8 7 6 10 10 C 1.49455 * 119.99748 * 181.89604 * 8 7 6 11 11 O 1.21348 * 120.00312 * 353.01074 * 10 8 7 12 12 N 1.34774 * 119.99480 * 173.00105 * 10 8 7 13 13 C 1.47431 * 125.65148 * 359.96672 * 12 10 8 14 14 C 1.55389 * 104.87282 * 204.16352 * 13 12 10 15 15 C 1.55153 * 101.36930 * 323.01613 * 14 13 12 16 16 O 1.42900 * 110.72113 * 277.04362 * 15 14 13 17 17 C 1.50696 * 110.72257 * 153.94266 * 15 14 13 18 18 H 1.07997 * 119.99858 * 2.44800 * 17 15 14 19 19 C 1.37877 * 120.00221 * 182.43589 * 17 15 14 20 20 N 1.31517 * 120.00100 * 0.02562 * 19 17 15 21 21 Si 1.86801 * 120.00242 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.46810 * 60.00301 * 21 19 17 23 23 H 1.48497 * 109.47430 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47012 * 300.00557 * 21 19 17 25 25 C 1.47026 * 125.64607 * 180.02562 * 12 10 8 26 26 C 1.46932 * 118.74109 * 306.64712 * 7 6 5 27 27 C 1.52756 * 109.00971 * 53.30232 * 26 7 6 28 28 H 1.09005 * 109.47370 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46785 * 299.99904 * 1 2 3 30 30 H 1.09002 * 109.47013 * 59.99876 * 1 2 3 31 31 H 1.09003 * 109.46785 * 240.00096 * 2 1 3 32 32 H 1.09003 * 109.47539 * 120.00678 * 2 1 3 33 33 H 1.08996 * 109.44999 * 329.96869 * 4 3 2 34 34 H 1.09001 * 109.49609 * 58.67109 * 5 4 3 35 35 H 1.08997 * 109.52634 * 298.58503 * 5 4 3 36 36 H 1.08999 * 109.58665 * 294.84990 * 6 5 4 37 37 H 1.09002 * 109.70535 * 174.49451 * 6 5 4 38 38 H 1.08999 * 110.36413 * 322.99654 * 13 12 10 39 39 H 1.08997 * 110.36465 * 85.21155 * 13 12 10 40 40 H 1.09000 * 111.18462 * 204.97613 * 14 13 12 41 41 H 1.09005 * 111.01770 * 80.98313 * 14 13 12 42 42 H 0.96696 * 113.99887 * 177.55535 * 16 15 14 43 43 H 0.96998 * 120.00357 * 179.97438 * 20 19 17 44 44 H 1.08997 * 109.88079 * 59.49071 * 25 12 10 45 45 H 1.09002 * 110.01071 * 298.39798 * 25 12 10 46 46 H 1.08997 * 109.58798 * 173.13997 * 26 7 6 47 47 H 1.09004 * 109.58165 * 293.56969 * 26 7 6 48 48 H 1.09001 * 109.56845 * 185.55972 * 27 26 7 49 49 H 1.09002 * 109.38976 * 65.52026 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4600 0.0006 5 6 3.8402 2.7462 0.7221 6 6 5.3686 2.8463 0.7511 7 7 5.8757 2.7381 -0.6236 8 6 6.6977 3.6794 -1.1284 9 8 7.0532 4.6095 -0.4350 10 6 7.1713 3.5775 -2.5423 11 8 6.9212 2.5862 -3.1960 12 7 7.8759 4.5867 -3.0912 13 6 8.2478 5.8427 -2.4145 14 6 8.4596 6.8672 -3.5635 15 6 9.1110 5.9749 -4.6528 16 8 10.5161 5.8455 -4.4266 17 6 8.8432 6.5305 -6.0277 18 1 8.2983 7.4563 -6.1392 19 6 9.2939 5.8572 -7.1433 20 7 9.9571 4.7297 -7.0075 21 14 8.9624 6.5464 -8.8476 22 1 9.5805 7.8914 -8.9663 23 1 9.5459 5.6410 -9.8698 24 1 7.4969 6.6545 -9.0614 25 6 8.4000 4.6181 -4.4645 26 6 5.4648 1.5874 -1.4397 27 6 3.9399 1.4984 -1.4423 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8932 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 3.8627 0.6017 0.5153 34 1 3.4574 2.7284 1.7425 35 1 3.4291 3.6066 0.1942 36 1 5.7764 2.0364 1.3559 37 1 5.6661 3.8051 1.1758 38 1 7.4433 6.1718 -1.7569 39 1 9.1695 5.7099 -1.8481 40 1 9.1344 7.6671 -3.2586 41 1 7.5074 7.2713 -3.9074 42 1 10.9645 5.2669 -5.0585 43 1 10.2739 4.2558 -7.7923 44 1 7.5797 4.5273 -5.1765 45 1 9.1100 3.8041 -4.6115 46 1 5.8236 1.7169 -2.4608 47 1 5.8807 0.6727 -1.0172 48 1 3.6279 0.5927 -1.9622 49 1 3.5273 2.3701 -1.9504 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326493025.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:35 Heat of formation + Delta-G solvation = -143.574563 kcal Electronic energy + Delta-G solvation = -30955.867060 eV Core-core repulsion = 26690.845847 eV Total energy + Delta-G solvation = -4265.021213 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.83157 -39.27093 -38.32721 -37.44261 -36.58649 -34.37970 -32.65753 -32.24281 -31.33151 -30.69090 -30.22258 -27.97933 -26.37009 -25.04425 -23.74197 -23.39060 -22.84959 -21.90202 -20.50881 -19.62473 -19.05062 -17.25874 -17.22673 -16.91849 -16.70529 -16.05654 -15.80952 -15.52240 -15.23765 -14.87153 -14.70918 -14.53984 -14.24175 -14.06570 -13.70781 -13.27856 -13.07116 -13.04953 -12.90466 -12.67453 -12.50105 -12.38932 -12.26122 -12.13253 -11.77517 -11.56157 -11.46429 -11.39990 -11.34232 -11.09172 -10.89711 -10.75150 -10.64522 -10.55738 -10.50813 -10.18384 -9.74336 -9.35459 -8.86643 -8.78196 -8.66249 -8.36386 -8.09824 -6.33573 -4.42169 1.70401 2.49430 3.20319 3.25891 3.28091 3.30945 3.51288 3.68261 4.23331 4.38805 4.54690 4.61370 4.74827 4.79912 4.90057 4.94547 4.95892 5.04810 5.09122 5.13377 5.32722 5.43555 5.45451 5.52812 5.55735 5.61943 5.70591 5.77832 5.78733 5.83328 5.88737 5.98688 6.04931 6.09486 6.25437 6.37370 6.47689 6.73050 6.78298 6.82839 6.98606 7.11719 7.16570 7.27999 7.68354 7.74647 7.97109 8.01345 8.35850 8.61417 9.25975 9.36039 10.74221 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.017422 B = 0.002573 C = 0.002369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.743851 B =10881.690662 C =11818.272954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.056 3.944 3 O -0.383 6.383 4 C 0.089 3.911 5 C -0.129 4.129 6 C 0.111 3.889 7 N -0.587 5.587 8 C 0.513 3.487 9 O -0.519 6.519 10 C 0.510 3.490 11 O -0.527 6.527 12 N -0.569 5.569 13 C 0.101 3.899 14 C -0.121 4.121 15 C 0.248 3.752 16 O -0.583 6.583 17 C -0.537 4.537 18 H 0.068 0.932 19 C 0.070 3.930 20 N -0.896 5.896 21 Si 0.905 3.095 22 H -0.274 1.274 23 H -0.285 1.285 24 H -0.275 1.275 25 C 0.098 3.902 26 C 0.049 3.951 27 C -0.153 4.153 28 H 0.069 0.931 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.048 0.952 32 H 0.046 0.954 33 H 0.061 0.939 34 H 0.082 0.918 35 H 0.077 0.923 36 H 0.071 0.929 37 H 0.100 0.900 38 H 0.083 0.917 39 H 0.071 0.929 40 H 0.080 0.920 41 H 0.077 0.923 42 H 0.384 0.616 43 H 0.272 0.728 44 H 0.074 0.926 45 H 0.073 0.927 46 H 0.168 0.832 47 H 0.063 0.937 48 H 0.076 0.924 49 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.661 -8.526 14.004 20.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.303 6.303 4 C 0.032 3.968 5 C -0.167 4.167 6 C -0.011 4.011 7 N -0.321 5.321 8 C 0.296 3.704 9 O -0.394 6.394 10 C 0.293 3.707 11 O -0.409 6.409 12 N -0.300 5.300 13 C -0.022 4.022 14 C -0.159 4.159 15 C 0.207 3.793 16 O -0.393 6.393 17 C -0.575 4.575 18 H 0.086 0.914 19 C -0.133 4.133 20 N -0.535 5.535 21 Si 0.732 3.268 22 H -0.199 1.199 23 H -0.211 1.211 24 H -0.200 1.200 25 C -0.023 4.023 26 C -0.072 4.072 27 C -0.191 4.191 28 H 0.088 0.912 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.067 0.933 32 H 0.064 0.936 33 H 0.079 0.921 34 H 0.100 0.900 35 H 0.095 0.905 36 H 0.089 0.911 37 H 0.118 0.882 38 H 0.101 0.899 39 H 0.090 0.910 40 H 0.098 0.902 41 H 0.096 0.904 42 H 0.235 0.765 43 H 0.082 0.918 44 H 0.092 0.908 45 H 0.091 0.909 46 H 0.183 0.817 47 H 0.081 0.919 48 H 0.094 0.906 49 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -12.767 -8.155 14.445 20.932 hybrid contribution -0.019 -0.605 -1.314 1.447 sum -12.786 -8.761 13.131 20.314 Atomic orbital electron populations 1.21744 0.93827 1.02156 1.03134 1.22491 0.95528 0.84029 0.99980 1.87927 1.20995 1.26275 1.95100 1.22147 0.80940 0.97916 0.95847 1.21970 0.95211 0.97976 1.01554 1.21661 0.92608 1.04049 0.82832 1.47974 1.46287 1.23877 1.13959 1.20265 0.79594 0.82166 0.88340 1.90700 1.56058 1.32033 1.60647 1.19607 0.80540 0.83467 0.87080 1.90217 1.57380 1.30105 1.63152 1.48727 1.48647 1.16572 1.16013 1.22703 1.00807 0.83093 0.95551 1.22914 1.00842 0.97244 0.94861 1.19504 0.79398 0.87964 0.92402 1.86116 1.21746 1.72468 1.58925 1.21481 1.37080 1.09009 0.89977 0.91422 1.25082 0.93862 0.94357 0.99976 1.69624 1.37143 1.15487 1.31249 0.86434 0.78750 0.78990 0.82598 1.19940 1.21062 1.20008 1.23301 0.98718 1.02301 0.77989 1.23259 0.93816 0.87227 1.02862 1.22345 0.96302 1.03510 0.96967 0.91201 0.91940 0.91797 0.93339 0.93554 0.92139 0.89992 0.90464 0.91102 0.88168 0.89894 0.91043 0.90172 0.90446 0.76498 0.91838 0.90787 0.90906 0.81658 0.91851 0.90554 0.90688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 10.28 37.15 0.38 -0.65 16 2 C 0.06 0.45 6.47 37.15 0.24 0.69 16 3 O -0.38 -4.09 9.99 -35.23 -0.35 -4.44 16 4 C 0.09 0.88 2.57 -26.69 -0.07 0.82 16 5 C -0.13 -1.26 5.73 -26.61 -0.15 -1.41 16 6 C 0.11 1.19 6.43 -3.71 -0.02 1.17 16 7 N -0.59 -8.06 2.98 -173.54 -0.52 -8.57 16 8 C 0.51 8.68 7.70 -11.58 -0.09 8.59 16 9 O -0.52 -9.33 13.32 5.50 0.07 -9.25 16 10 C 0.51 9.87 7.83 -11.58 -0.09 9.78 16 11 O -0.53 -10.64 13.35 5.50 0.07 -10.57 16 12 N -0.57 -11.75 3.33 -170.71 -0.57 -12.31 16 13 C 0.10 1.92 5.97 -2.26 -0.01 1.91 16 14 C -0.12 -2.43 6.26 -24.32 -0.15 -2.59 16 15 C 0.25 5.89 0.85 -89.94 -0.08 5.81 16 16 O -0.58 -14.48 13.08 -35.23 -0.46 -14.94 16 17 C -0.54 -13.71 8.11 -34.44 -0.28 -13.99 16 18 H 0.07 1.70 7.77 -52.49 -0.41 1.29 16 19 C 0.07 1.79 5.27 -17.82 -0.09 1.70 16 20 N -0.90 -23.17 10.96 55.43 0.61 -22.56 16 21 Si 0.91 20.04 29.54 -169.99 -5.02 15.02 16 22 H -0.27 -6.06 7.11 56.52 0.40 -5.65 16 23 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 24 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 25 C 0.10 2.28 5.38 -3.06 -0.02 2.26 16 26 C 0.05 0.62 6.20 -3.93 -0.02 0.60 16 27 C -0.15 -1.69 5.68 -26.83 -0.15 -1.84 16 28 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.05 0.37 7.84 -51.93 -0.41 -0.04 16 32 H 0.05 0.32 8.08 -51.93 -0.42 -0.10 16 33 H 0.06 0.52 7.78 -51.93 -0.40 0.12 16 34 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.10 1.15 7.01 -51.93 -0.36 0.78 16 38 H 0.08 1.48 6.36 -51.93 -0.33 1.15 16 39 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 40 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 41 H 0.08 1.49 8.04 -51.93 -0.42 1.07 16 42 H 0.38 9.72 7.23 45.56 0.33 10.05 16 43 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 44 H 0.07 1.84 7.81 -51.93 -0.41 1.43 16 45 H 0.07 1.83 7.99 -51.93 -0.42 1.41 16 46 H 0.17 2.56 3.79 -56.97 -0.22 2.35 16 47 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 48 H 0.08 0.75 7.84 -51.93 -0.41 0.35 16 49 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 LS Contribution 385.87 15.07 5.81 5.81 Total: -1.00 -27.94 385.87 -8.19 -36.13 By element: Atomic # 1 Polarization: 20.07 SS G_CDS: -7.23 Total: 12.84 kcal Atomic # 6 Polarization: 13.46 SS G_CDS: -0.61 Total: 12.85 kcal Atomic # 7 Polarization: -42.97 SS G_CDS: -0.48 Total: -43.45 kcal Atomic # 8 Polarization: -38.54 SS G_CDS: -0.67 Total: -39.20 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.02 Total: 15.02 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -27.94 -8.19 -36.13 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326493025.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.449 kcal (2) G-P(sol) polarization free energy of solvation -27.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds