Wall clock time and date at job start Wed Apr 1 2020 00:07:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42899 * 113.99879 * 2 1 4 4 C 1.52997 * 109.46823 * 180.02562 * 3 2 1 5 5 O 1.42897 * 109.47473 * 64.99821 * 4 3 2 6 6 C 1.42901 * 114.00215 * 180.02562 * 5 4 3 7 7 C 1.53496 * 114.20931 * 150.00090 * 6 5 4 8 8 N 1.47067 * 87.98624 * 139.65689 * 7 6 5 9 9 C 1.34768 * 136.05998 * 152.84972 * 8 7 6 10 10 O 1.21357 * 120.00157 * 359.97438 * 9 8 7 11 11 C 1.49453 * 120.00285 * 179.97438 * 9 8 7 12 12 O 1.21342 * 119.99835 * 353.48003 * 11 9 8 13 13 N 1.34775 * 119.99734 * 173.47962 * 11 9 8 14 14 C 1.46926 * 120.63642 * 353.01797 * 13 11 9 15 15 C 1.53182 * 108.77712 * 126.36794 * 14 13 11 16 16 C 1.53043 * 109.31676 * 54.63793 * 15 14 13 17 17 C 1.53042 * 109.53296 * 298.63414 * 16 15 14 18 18 H 1.09000 * 109.49766 * 301.40741 * 17 16 15 19 19 C 1.50707 * 109.52182 * 181.32657 * 17 16 15 20 20 H 1.07997 * 119.99613 * 0.15162 * 19 17 16 21 21 C 1.37874 * 119.99949 * 180.14429 * 19 17 16 22 22 N 1.31518 * 120.00001 * 359.97438 * 21 19 17 23 23 Si 1.86800 * 119.99978 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47582 * 90.00053 * 23 21 19 25 25 H 1.48507 * 109.46956 * 210.00100 * 23 21 19 26 26 H 1.48501 * 109.47101 * 329.99433 * 23 21 19 27 27 C 1.46928 * 120.62683 * 172.99178 * 13 11 9 28 28 C 1.47072 * 87.88555 * 333.09870 * 8 7 6 29 29 H 1.09007 * 109.47113 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47025 * 299.99767 * 1 2 3 31 31 H 1.08996 * 109.47055 * 60.00137 * 1 2 3 32 32 H 1.08997 * 109.47270 * 59.99923 * 3 2 1 33 33 H 1.09003 * 109.47194 * 299.99900 * 3 2 1 34 34 H 1.09004 * 109.46944 * 304.99641 * 4 3 2 35 35 H 1.09005 * 109.47212 * 185.00094 * 4 3 2 36 36 H 1.09006 * 113.28155 * 16.92988 * 6 5 4 37 37 H 1.09006 * 113.46776 * 24.87360 * 7 6 5 38 38 H 1.08996 * 113.51844 * 254.44353 * 7 6 5 39 39 H 1.09008 * 109.58180 * 246.15869 * 14 13 11 40 40 H 1.08994 * 109.58376 * 6.57770 * 14 13 11 41 41 H 1.09009 * 109.49862 * 174.58567 * 15 14 13 42 42 H 1.09000 * 109.50188 * 294.68297 * 15 14 13 43 43 H 1.08992 * 109.46425 * 178.61273 * 16 15 14 44 44 H 1.09002 * 109.44971 * 58.64206 * 16 15 14 45 45 H 0.97001 * 119.99853 * 179.97438 * 22 21 19 46 46 H 1.09000 * 109.58647 * 353.42033 * 27 13 11 47 47 H 1.09008 * 109.58681 * 113.69901 * 27 13 11 48 48 H 1.09000 * 113.46740 * 141.67975 * 28 8 7 49 49 H 1.08993 * 113.46894 * 272.12275 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 8 3.9649 0.5796 -1.2219 6 6 5.3811 0.4190 -1.3245 7 6 5.8185 -0.7854 -2.1695 8 7 6.8833 0.0602 -2.7299 9 6 8.1071 -0.1422 -3.2566 10 8 8.5522 -1.2679 -3.3425 11 6 8.9164 1.0197 -3.7349 12 8 8.4279 2.1302 -3.7593 13 7 10.1886 0.8340 -4.1391 14 6 10.8438 -0.4707 -3.9738 15 6 11.3975 -0.9197 -5.3296 16 6 12.3083 0.1742 -5.8919 17 6 11.4991 1.4562 -6.1013 18 1 10.6728 1.2574 -6.7838 19 6 12.3885 2.5234 -6.6854 20 1 13.4270 2.3085 -6.8898 21 6 11.8764 3.7739 -6.9591 22 7 10.6116 4.0353 -6.7108 23 14 12.9787 5.0964 -7.6838 24 1 12.9291 5.0247 -9.1663 25 1 12.5085 6.4323 -7.2369 26 1 14.3747 4.8839 -7.2243 27 6 10.9465 1.9322 -4.7541 28 6 6.0274 1.2246 -2.4567 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.6886 1.8464 0.8899 33 1 1.6886 1.8464 -0.8900 34 1 3.8514 0.5682 0.8410 35 1 3.9786 2.1765 0.0889 36 1 5.8948 0.5032 -0.3667 37 1 5.0752 -1.0922 -2.9055 38 1 6.1935 -1.6196 -1.5766 39 1 11.6602 -0.3812 -3.2570 40 1 10.1185 -1.2010 -3.6153 41 1 11.9691 -1.8393 -5.2027 42 1 10.5722 -1.0961 -6.0194 43 1 12.7231 -0.1532 -6.8452 44 1 13.1195 0.3674 -5.1900 45 1 10.2514 4.9152 -6.9030 46 1 10.2888 2.7873 -4.9105 47 1 11.7698 2.2193 -4.0999 48 1 6.5797 2.0966 -2.1065 49 1 5.3404 1.4587 -3.2698 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327704660.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:07:56 Heat of formation + Delta-G solvation = -94.246796 kcal Electronic energy + Delta-G solvation = -30072.074191 eV Core-core repulsion = 25809.191990 eV Total energy + Delta-G solvation = -4262.882201 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.88131 -39.57151 -38.45092 -37.76306 -36.87960 -36.39582 -33.28258 -31.73916 -30.90239 -29.73577 -29.21571 -26.64504 -26.36418 -25.57441 -24.95792 -23.09864 -22.82903 -21.80901 -21.14530 -19.35222 -18.54447 -17.78145 -17.10265 -17.07049 -16.73229 -16.14719 -16.02349 -15.85192 -15.62291 -15.18383 -15.01102 -14.57241 -14.16147 -14.07192 -13.84309 -13.67624 -13.41986 -13.12683 -12.86441 -12.77737 -12.59403 -12.55262 -12.24489 -12.05411 -11.77928 -11.70963 -11.65054 -11.33948 -11.26207 -10.98481 -10.69098 -10.44859 -10.27105 -10.08783 -10.03754 -9.89295 -9.75527 -9.20685 -9.11723 -8.95233 -8.50705 -8.40959 -7.82092 -6.02307 -4.10422 1.78006 2.30630 3.27154 3.30572 3.36988 3.37647 3.39704 3.67616 3.72527 4.06142 4.40954 4.52170 4.55959 4.62640 4.74447 4.83082 4.94414 4.96702 5.08434 5.11399 5.25895 5.28209 5.29364 5.31673 5.35488 5.46512 5.63552 5.67971 5.70625 5.72375 5.95444 6.22099 6.39424 6.46237 6.61613 6.71057 6.72444 6.85710 6.88440 7.00113 7.08265 7.17520 7.46396 7.59140 7.80552 7.90826 7.95822 8.16692 8.35405 8.59094 8.93713 9.55048 11.03337 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.017644 B = 0.002224 C = 0.002017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.520219 B =12589.487045 C =13880.450704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.384 6.384 3 C 0.061 3.939 4 C 0.061 3.939 5 O -0.357 6.357 6 C 0.048 3.952 7 C 0.106 3.894 8 N -0.620 5.620 9 C 0.544 3.456 10 O -0.512 6.512 11 C 0.500 3.500 12 O -0.519 6.519 13 N -0.568 5.568 14 C 0.050 3.950 15 C -0.128 4.128 16 C -0.113 4.113 17 C 0.040 3.960 18 H 0.029 0.971 19 C -0.518 4.518 20 H 0.060 0.940 21 C 0.061 3.939 22 N -0.883 5.883 23 Si 0.894 3.106 24 H -0.281 1.281 25 H -0.286 1.286 26 H -0.274 1.274 27 C 0.110 3.890 28 C 0.093 3.907 29 H 0.086 0.914 30 H 0.039 0.961 31 H 0.042 0.958 32 H 0.065 0.935 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.070 0.930 36 H 0.105 0.895 37 H 0.098 0.902 38 H 0.087 0.913 39 H 0.055 0.945 40 H 0.142 0.858 41 H 0.059 0.941 42 H 0.058 0.942 43 H 0.051 0.949 44 H 0.049 0.951 45 H 0.264 0.736 46 H 0.123 0.877 47 H 0.048 0.952 48 H 0.094 0.906 49 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.501 -7.412 15.687 23.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.303 6.303 3 C -0.015 4.015 4 C -0.015 4.015 5 O -0.275 6.275 6 C -0.011 4.011 7 C -0.017 4.017 8 N -0.357 5.357 9 C 0.331 3.669 10 O -0.390 6.390 11 C 0.281 3.719 12 O -0.396 6.396 13 N -0.300 5.300 14 C -0.071 4.071 15 C -0.166 4.166 16 C -0.151 4.151 17 C 0.021 3.979 18 H 0.047 0.953 19 C -0.557 4.557 20 H 0.078 0.922 21 C -0.141 4.141 22 N -0.521 5.521 23 Si 0.722 3.278 24 H -0.207 1.207 25 H -0.212 1.212 26 H -0.199 1.199 27 C -0.010 4.010 28 C -0.030 4.030 29 H 0.104 0.896 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.088 0.912 36 H 0.123 0.877 37 H 0.116 0.884 38 H 0.105 0.895 39 H 0.074 0.926 40 H 0.158 0.842 41 H 0.078 0.922 42 H 0.077 0.923 43 H 0.069 0.931 44 H 0.068 0.932 45 H 0.074 0.926 46 H 0.141 0.859 47 H 0.066 0.934 48 H 0.112 0.888 49 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -16.432 -7.505 15.366 23.716 hybrid contribution 0.589 1.128 -0.379 1.328 sum -15.844 -6.376 14.986 22.721 Atomic orbital electron populations 1.22750 0.81009 1.02897 0.99910 1.87960 1.19645 1.27317 1.95394 1.22583 0.92279 0.85549 1.01120 1.22644 0.93434 0.97987 0.87466 1.87991 1.20153 1.81236 1.38109 1.23896 0.82098 0.96853 0.98263 1.23248 0.87650 0.95110 0.95664 1.48936 1.13837 1.12785 1.60156 1.20406 0.80116 0.89879 0.76501 1.90321 1.67708 1.25592 1.55343 1.19584 0.83323 0.87961 0.81022 1.90736 1.70458 1.24345 1.54081 1.48443 1.10733 1.14378 1.56436 1.23066 0.99791 0.86342 0.97951 1.21860 0.99632 0.98439 0.96666 1.21663 0.97805 0.96149 0.99437 1.18984 0.95138 0.91622 0.92191 0.95263 1.21096 0.96510 0.96135 1.41927 0.92220 1.25068 0.95050 0.98667 0.95344 1.69877 1.12556 1.22254 1.47390 0.86559 0.80792 0.81095 0.79359 1.20664 1.21176 1.19883 1.22484 0.95217 0.89246 0.94014 1.23553 0.91175 0.91275 0.97037 0.89562 0.94202 0.93934 0.91698 0.92133 0.92047 0.91157 0.87677 0.88425 0.89485 0.92629 0.84158 0.92231 0.92341 0.93057 0.93227 0.92642 0.85924 0.93354 0.88768 0.88427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.29 16 2 O -0.38 -3.46 10.67 -40.09 -0.43 -3.89 16 3 C 0.06 0.42 6.32 37.16 0.23 0.65 16 4 C 0.06 0.43 6.16 37.16 0.23 0.66 16 5 O -0.36 -3.48 10.36 -40.09 -0.42 -3.90 16 6 C 0.05 0.45 4.65 -26.35 -0.12 0.33 16 7 C 0.11 1.15 8.46 -8.50 -0.07 1.08 16 8 N -0.62 -8.98 3.69 -185.90 -0.69 -9.67 16 9 C 0.54 9.73 8.03 -11.59 -0.09 9.64 16 10 O -0.51 -9.47 13.88 5.49 0.08 -9.39 16 11 C 0.50 10.50 7.74 -11.58 -0.09 10.41 16 12 O -0.52 -12.00 14.76 5.50 0.08 -11.92 16 13 N -0.57 -12.21 2.97 -173.28 -0.52 -12.73 16 14 C 0.05 0.93 6.27 -3.72 -0.02 0.90 16 15 C -0.13 -2.35 6.08 -26.61 -0.16 -2.51 16 16 C -0.11 -2.37 5.11 -26.69 -0.14 -2.51 16 17 C 0.04 1.01 2.25 -91.65 -0.21 0.80 16 18 H 0.03 0.83 8.14 -51.93 -0.42 0.40 16 19 C -0.52 -14.15 8.57 -34.44 -0.29 -14.44 16 20 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 21 C 0.06 1.70 5.30 -17.82 -0.09 1.60 16 22 N -0.88 -25.60 11.39 55.43 0.63 -24.97 16 23 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 24 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 25 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 26 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 27 C 0.11 2.71 5.38 -3.71 -0.02 2.69 16 28 C 0.09 1.13 7.40 -8.63 -0.06 1.07 16 29 H 0.09 0.43 8.14 -51.92 -0.42 0.00 16 30 H 0.04 0.18 8.14 -51.93 -0.42 -0.25 16 31 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 35 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.11 0.82 7.88 -51.93 -0.41 0.41 16 37 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.06 0.95 8.14 -51.92 -0.42 0.53 16 40 H 0.14 2.55 3.78 -56.76 -0.21 2.34 16 41 H 0.06 0.93 8.14 -51.92 -0.42 0.50 16 42 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 43 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 44 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 45 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 46 H 0.12 3.45 5.17 -51.93 -0.27 3.18 16 47 H 0.05 1.18 8.14 -51.92 -0.42 0.75 16 48 H 0.09 1.21 7.54 -51.93 -0.39 0.82 16 49 H 0.10 1.19 8.14 -51.93 -0.42 0.76 16 LS Contribution 396.14 15.07 5.97 5.97 Total: -1.00 -32.89 396.14 -8.12 -41.01 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -8.01 Total: 1.57 kcal Atomic # 6 Polarization: 11.48 SS G_CDS: 0.20 Total: 11.68 kcal Atomic # 7 Polarization: -46.79 SS G_CDS: -0.57 Total: -47.36 kcal Atomic # 8 Polarization: -28.41 SS G_CDS: -0.69 Total: -29.10 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -32.89 -8.12 -41.01 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327704660.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.237 kcal (2) G-P(sol) polarization free energy of solvation -32.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds