Wall clock time and date at job start Tue Mar 31 2020 23:45:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46504 * 120.00331 * 2 1 4 4 C 1.52999 * 109.47138 * 270.00524 * 3 2 1 5 5 H 1.08993 * 109.52941 * 59.86826 * 4 3 2 6 6 C 1.53141 * 109.52335 * 179.97438 * 4 3 2 7 7 O 1.43070 * 109.15383 * 175.21063 * 6 4 3 8 8 C 1.43072 * 113.59088 * 302.04841 * 7 6 4 9 9 C 1.53138 * 109.15488 * 57.95368 * 8 7 6 10 10 O 1.43079 * 109.14786 * 304.68439 * 9 8 7 11 11 C 1.34777 * 120.00047 * 180.02562 * 2 1 3 12 12 O 1.21350 * 120.00211 * 185.05876 * 11 2 1 13 13 C 1.49453 * 119.99631 * 5.04950 * 11 2 1 14 14 O 1.21348 * 119.99935 * 85.53479 * 13 11 2 15 15 N 1.34781 * 120.00228 * 265.52622 * 13 11 2 16 16 C 1.46923 * 120.62701 * 354.93004 * 15 13 11 17 17 C 1.53193 * 108.77754 * 233.62769 * 16 15 13 18 18 C 1.53111 * 109.33086 * 305.36894 * 17 16 15 19 19 C 1.53045 * 109.50082 * 61.33765 * 18 17 16 20 20 H 1.09005 * 109.49678 * 58.62049 * 19 18 17 21 21 C 1.50702 * 109.49632 * 178.68396 * 19 18 17 22 22 H 1.08003 * 119.99845 * 359.93464 * 21 19 18 23 23 C 1.37878 * 119.99993 * 179.97438 * 21 19 18 24 24 N 1.31510 * 119.99768 * 0.02562 * 23 21 19 25 25 Si 1.86798 * 119.99983 * 180.02562 * 23 21 19 26 26 H 1.48505 * 109.47050 * 359.97438 * 25 23 21 27 27 H 1.48506 * 109.47221 * 119.99810 * 25 23 21 28 28 H 1.48503 * 109.47298 * 239.99913 * 25 23 21 29 29 C 1.46917 * 120.63084 * 174.95402 * 15 13 11 30 30 H 1.08995 * 109.46837 * 264.83933 * 1 2 3 31 31 H 1.09003 * 109.46519 * 24.83993 * 1 2 3 32 32 H 1.08995 * 109.47185 * 144.83719 * 1 2 3 33 33 H 1.09001 * 109.46511 * 30.00128 * 3 2 1 34 34 H 1.08998 * 109.46907 * 149.99989 * 3 2 1 35 35 H 1.09001 * 109.52691 * 295.11861 * 6 4 3 36 36 H 1.09006 * 109.52820 * 55.30922 * 6 4 3 37 37 H 1.09006 * 109.52440 * 177.85559 * 8 7 6 38 38 H 1.09000 * 109.52591 * 298.03952 * 8 7 6 39 39 H 1.08995 * 109.52649 * 64.58176 * 9 8 7 40 40 H 1.08997 * 109.52840 * 184.72379 * 9 8 7 41 41 H 1.08997 * 109.58938 * 353.41507 * 16 15 13 42 42 H 1.08999 * 109.58547 * 113.70066 * 16 15 13 43 43 H 1.09001 * 109.49444 * 65.31548 * 17 16 15 44 44 H 1.09000 * 109.50347 * 185.38058 * 17 16 15 45 45 H 1.08990 * 109.45023 * 301.34925 * 18 17 16 46 46 H 1.08997 * 109.50617 * 181.36423 * 18 17 16 47 47 H 0.97006 * 119.99818 * 180.02562 * 24 23 21 48 48 H 1.08999 * 109.58708 * 6.58197 * 29 15 13 49 49 H 1.08999 * 109.70452 * 246.22813 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4525 1.7104 -1.4425 5 1 1.5007 1.8389 -1.9578 6 6 3.2177 3.0370 -1.4439 7 8 3.5495 3.3861 -2.7911 8 6 4.3296 2.3935 -3.4643 9 6 3.5644 1.0670 -3.4630 10 8 3.2327 0.7178 -2.1157 11 6 2.1389 -1.1672 -0.0005 12 8 3.3488 -1.1693 0.0921 13 6 1.3959 -2.4589 -0.1150 14 8 1.1034 -2.8957 -1.2087 15 7 1.0509 -3.1387 0.9964 16 6 1.4929 -2.6816 2.3209 17 6 2.1975 -3.8408 3.0328 18 6 1.2668 -5.0562 3.0655 19 6 0.9447 -5.4916 1.6342 20 1 1.8698 -5.7317 1.1100 21 6 0.0548 -6.7074 1.6666 22 1 -0.2499 -7.1285 2.6133 23 6 -0.3697 -7.2826 0.4876 24 7 0.0023 -6.7706 -0.6652 25 14 -1.4733 -8.7892 0.5278 26 1 -1.7451 -9.1663 1.9382 27 1 -2.7541 -8.4832 -0.1588 28 1 -0.7978 -9.9163 -0.1641 29 6 0.2260 -4.3512 0.9065 30 1 -0.3633 -0.0924 1.0235 31 1 -0.3632 0.9326 -0.4317 32 1 -0.3633 -0.8401 -0.5918 33 1 1.6085 2.0283 0.5139 34 1 3.1500 1.1383 0.5138 35 1 2.5942 3.8177 -1.0082 36 1 4.1317 2.9310 -0.8594 37 1 4.5113 2.7082 -4.4920 38 1 5.2810 2.2659 -2.9479 39 1 2.6505 1.1731 -4.0473 40 1 4.1876 0.2865 -3.8996 41 1 2.1855 -1.8476 2.2073 42 1 0.6293 -2.3626 2.9044 43 1 3.1107 -4.0965 2.4954 44 1 2.4459 -3.5448 4.0520 45 1 0.3436 -4.7925 3.5813 46 1 1.7561 -5.8751 3.5928 47 1 -0.2967 -7.1750 -1.4946 48 1 0.0825 -4.6187 -0.1404 49 1 -0.7423 -4.1724 1.3739 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328290453.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:45:02 Heat of formation + Delta-G solvation = -148.953660 kcal Electronic energy + Delta-G solvation = -31605.002437 eV Core-core repulsion = 27339.747969 eV Total energy + Delta-G solvation = -4265.254469 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.65053 -39.95467 -38.37905 -36.70631 -36.34230 -35.58210 -33.40471 -32.46347 -31.80819 -29.87360 -29.10776 -27.23391 -26.74604 -25.20559 -24.97257 -23.72893 -22.07046 -21.82528 -21.19612 -19.49560 -18.33257 -17.53185 -17.19450 -16.94148 -16.61406 -16.17757 -16.10043 -16.02613 -15.53986 -15.20348 -14.73480 -14.45782 -14.23595 -14.02853 -13.72551 -13.60769 -13.29894 -13.11015 -12.83969 -12.74041 -12.64603 -12.62486 -12.26406 -12.22669 -12.04886 -11.92878 -11.64740 -11.03850 -10.96409 -10.91987 -10.87775 -10.64805 -10.50412 -10.39424 -10.25732 -9.93676 -9.42349 -9.19440 -9.15185 -8.84274 -8.77629 -8.46568 -7.88428 -6.01153 -4.10310 2.49021 2.53016 3.04852 3.29300 3.37707 3.40571 3.41842 3.44220 3.77992 4.31245 4.41266 4.52800 4.61832 4.68743 4.76111 4.84463 4.97215 4.99242 5.03701 5.20617 5.23728 5.27039 5.29793 5.36548 5.47465 5.47600 5.58048 5.61376 5.65098 5.68374 5.94570 6.16836 6.27608 6.29226 6.56164 6.63020 6.64672 6.81112 6.92276 6.94576 7.03594 7.13086 7.15538 7.58374 7.83356 7.92955 8.04575 8.08566 8.33881 8.55743 8.94168 9.55518 11.04102 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.020118 B = 0.002799 C = 0.002625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.423883 B = 9999.672360 C =10662.640484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.605 5.605 3 C 0.124 3.876 4 C 0.035 3.965 5 H 0.069 0.931 6 C 0.033 3.967 7 O -0.380 6.380 8 C 0.024 3.976 9 C 0.024 3.976 10 O -0.354 6.354 11 C 0.525 3.475 12 O -0.504 6.504 13 C 0.507 3.493 14 O -0.509 6.509 15 N -0.588 5.588 16 C 0.108 3.892 17 C -0.133 4.133 18 C -0.110 4.110 19 C 0.038 3.962 20 H 0.031 0.969 21 C -0.520 4.520 22 H 0.060 0.940 23 C 0.062 3.938 24 N -0.880 5.880 25 Si 0.893 3.107 26 H -0.273 1.273 27 H -0.284 1.284 28 H -0.284 1.284 29 C 0.111 3.889 30 H 0.063 0.937 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.098 0.902 34 H 0.096 0.904 35 H 0.105 0.895 36 H 0.064 0.936 37 H 0.104 0.896 38 H 0.062 0.938 39 H 0.058 0.942 40 H 0.105 0.895 41 H 0.067 0.933 42 H 0.066 0.934 43 H 0.063 0.937 44 H 0.062 0.938 45 H 0.050 0.950 46 H 0.053 0.947 47 H 0.263 0.737 48 H 0.124 0.876 49 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.092 21.516 1.374 21.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.341 5.341 3 C 0.001 3.999 4 C -0.025 4.025 5 H 0.087 0.913 6 C -0.044 4.044 7 O -0.299 6.299 8 C -0.053 4.053 9 C -0.053 4.053 10 O -0.272 6.272 11 C 0.308 3.692 12 O -0.376 6.376 13 C 0.288 3.712 14 O -0.383 6.383 15 N -0.323 5.323 16 C -0.015 4.015 17 C -0.171 4.171 18 C -0.148 4.148 19 C 0.019 3.981 20 H 0.049 0.951 21 C -0.558 4.558 22 H 0.078 0.922 23 C -0.141 4.141 24 N -0.517 5.517 25 Si 0.720 3.280 26 H -0.198 1.198 27 H -0.210 1.210 28 H -0.210 1.210 29 C -0.008 4.008 30 H 0.082 0.918 31 H 0.094 0.906 32 H 0.096 0.904 33 H 0.116 0.884 34 H 0.114 0.886 35 H 0.123 0.877 36 H 0.082 0.918 37 H 0.122 0.878 38 H 0.080 0.920 39 H 0.077 0.923 40 H 0.123 0.877 41 H 0.085 0.915 42 H 0.084 0.916 43 H 0.082 0.918 44 H 0.080 0.920 45 H 0.069 0.931 46 H 0.072 0.928 47 H 0.073 0.927 48 H 0.142 0.858 49 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 3.564 21.210 0.638 21.516 hybrid contribution -0.611 -0.775 -0.182 1.004 sum 2.953 20.434 0.456 20.652 Atomic orbital electron populations 1.21907 0.78648 1.03846 1.02514 1.47683 1.07216 1.05133 1.74056 1.21454 0.99003 0.85466 0.94013 1.23245 0.94849 0.89139 0.95273 0.91301 1.23180 1.00049 0.96794 0.84427 1.88071 1.72878 1.43121 1.25784 1.23286 0.94276 0.89094 0.98611 1.23229 0.99896 0.97359 0.84799 1.88332 1.72056 1.41901 1.24946 1.20635 0.88098 0.84807 0.75646 1.90752 1.13287 1.86552 1.47035 1.20025 0.80139 0.85250 0.85755 1.90826 1.53124 1.68394 1.25987 1.48594 1.50737 1.28147 1.04783 1.21681 0.98500 0.97070 0.84252 1.21938 0.99675 0.96350 0.99143 1.21644 0.97487 0.95287 1.00369 1.18992 0.96723 0.92583 0.89810 0.95096 1.21105 1.30883 1.11273 0.92564 0.92209 1.25070 0.96207 0.97206 0.95624 1.69899 1.44337 1.40189 0.97296 0.86530 0.80421 0.82962 0.78046 1.19787 1.20980 1.21014 1.22422 0.91043 0.80538 1.06836 0.91849 0.90586 0.90424 0.88373 0.88578 0.87718 0.91763 0.87831 0.91985 0.92325 0.87656 0.91453 0.91558 0.91826 0.91986 0.93081 0.92791 0.92658 0.85834 0.93273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.79 10.23 59.85 0.61 1.40 16 2 N -0.60 -8.02 2.83 -182.08 -0.52 -8.54 16 3 C 0.12 1.24 5.18 -4.04 -0.02 1.22 16 4 C 0.03 0.37 3.11 -26.66 -0.08 0.29 16 5 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 6 C 0.03 0.29 6.34 37.23 0.24 0.52 16 7 O -0.38 -3.97 10.85 -48.80 -0.53 -4.50 16 8 C 0.02 0.22 7.05 37.23 0.26 0.49 16 9 C 0.02 0.27 7.05 37.23 0.26 0.53 16 10 O -0.35 -5.09 9.34 -53.73 -0.50 -5.59 16 11 C 0.53 9.50 5.02 -11.58 -0.06 9.44 16 12 O -0.50 -10.29 15.95 3.80 0.06 -10.23 16 13 C 0.51 10.76 5.74 -11.58 -0.07 10.69 16 14 O -0.51 -12.81 16.41 5.50 0.09 -12.72 16 15 N -0.59 -11.92 2.97 -173.29 -0.52 -12.44 16 16 C 0.11 1.76 6.32 -3.71 -0.02 1.74 16 17 C -0.13 -2.24 6.08 -26.57 -0.16 -2.40 16 18 C -0.11 -2.18 5.11 -26.65 -0.14 -2.31 16 19 C 0.04 0.94 2.25 -91.65 -0.21 0.73 16 20 H 0.03 0.87 8.14 -51.93 -0.42 0.44 16 21 C -0.52 -13.88 8.56 -34.44 -0.29 -14.18 16 22 H 0.06 1.56 7.74 -52.48 -0.41 1.16 16 23 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 24 N -0.88 -25.50 11.40 55.43 0.63 -24.87 16 25 Si 0.89 21.02 29.54 -169.99 -5.02 16.00 16 26 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 27 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 28 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 29 C 0.11 2.63 5.41 -3.72 -0.02 2.61 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.08 0.57 8.03 -51.93 -0.42 0.15 16 32 H 0.08 1.04 6.91 -51.93 -0.36 0.68 16 33 H 0.10 0.58 8.07 -51.93 -0.42 0.16 16 34 H 0.10 1.08 7.36 -51.93 -0.38 0.69 16 35 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.11 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.07 1.03 6.23 -51.93 -0.32 0.71 16 42 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 43 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 44 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 46 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 47 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 48 H 0.12 3.43 5.12 -51.93 -0.27 3.16 16 49 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 389.27 15.07 5.87 5.87 Total: -1.00 -35.05 389.27 -8.28 -43.33 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: -8.05 Total: 1.31 kcal Atomic # 6 Polarization: 12.16 SS G_CDS: 0.21 Total: 12.36 kcal Atomic # 7 Polarization: -45.44 SS G_CDS: -0.40 Total: -45.84 kcal Atomic # 8 Polarization: -32.15 SS G_CDS: -0.88 Total: -33.03 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -35.05 -8.28 -43.33 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328290453.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.624 kcal (2) G-P(sol) polarization free energy of solvation -35.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds