Wall clock time and date at job start Tue Mar 31 2020 23:10:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42898 * 109.47054 * 2 1 4 4 C 1.42895 * 114.00225 * 180.02562 * 3 2 1 5 5 H 1.09003 * 109.57229 * 330.15988 * 4 3 2 6 6 C 1.53087 * 109.52616 * 90.31354 * 4 3 2 7 7 O 1.42897 * 109.41904 * 177.51870 * 6 4 3 8 8 C 1.42910 * 114.09565 * 298.84154 * 7 6 4 9 9 C 1.53089 * 109.41348 * 61.15975 * 8 7 6 10 10 C 1.53177 * 109.16266 * 302.39009 * 9 8 7 11 11 H 1.09006 * 109.61595 * 297.07104 * 10 9 8 12 12 N 1.46499 * 109.54876 * 176.84973 * 10 9 8 13 13 C 1.34782 * 120.00090 * 85.43945 * 12 10 9 14 14 O 1.21352 * 119.99726 * 0.02562 * 13 12 10 15 15 C 1.49444 * 120.00152 * 180.02562 * 13 12 10 16 16 O 1.21353 * 119.99909 * 5.02236 * 15 13 12 17 17 N 1.34779 * 120.00279 * 185.02523 * 15 13 12 18 18 C 1.46494 * 120.00177 * 185.02614 * 17 15 13 19 19 C 1.53005 * 109.47275 * 184.91385 * 18 17 15 20 20 C 1.50696 * 115.54533 * 330.23079 * 19 18 17 21 21 H 1.07999 * 119.99700 * 118.78472 * 20 19 18 22 22 C 1.37884 * 120.00381 * 298.78008 * 20 19 18 23 23 N 1.31511 * 119.99854 * 184.70842 * 22 20 19 24 24 Si 1.86802 * 119.99731 * 4.70927 * 22 20 19 25 25 H 1.48504 * 109.47038 * 84.85569 * 24 22 20 26 26 H 1.48497 * 109.47045 * 204.86063 * 24 22 20 27 27 H 1.48504 * 109.46968 * 324.86290 * 24 22 20 28 28 C 1.52994 * 117.49933 * 184.56013 * 19 18 17 29 29 C 1.52999 * 60.03233 * 252.47526 * 28 19 18 30 30 H 1.09005 * 109.46767 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.46651 * 299.99324 * 1 2 3 32 32 H 1.08991 * 109.47380 * 59.99759 * 1 2 3 33 33 H 1.09002 * 109.47119 * 240.00191 * 2 1 3 34 34 H 1.08991 * 109.47380 * 120.00241 * 2 1 3 35 35 H 1.09002 * 109.48113 * 297.50272 * 6 4 3 36 36 H 1.09000 * 109.48269 * 57.53416 * 6 4 3 37 37 H 1.09005 * 109.48060 * 181.13883 * 8 7 6 38 38 H 1.08999 * 109.48034 * 301.16147 * 8 7 6 39 39 H 1.09000 * 109.52244 * 182.48788 * 9 8 7 40 40 H 1.09001 * 109.52557 * 62.29709 * 9 8 7 41 41 H 0.96995 * 120.00047 * 265.45042 * 12 10 9 42 42 H 0.96997 * 119.99409 * 5.02878 * 17 15 13 43 43 H 1.09007 * 109.47304 * 64.91466 * 18 17 15 44 44 H 1.08999 * 109.47152 * 304.91433 * 18 17 15 45 45 H 0.97000 * 119.99248 * 180.02562 * 23 22 20 46 46 H 1.09005 * 117.49976 * 359.97438 * 28 19 18 47 47 H 1.08998 * 117.49579 * 144.97526 * 28 19 18 48 48 H 1.09009 * 117.49787 * 107.50103 * 29 28 19 49 49 H 1.08992 * 117.49774 * 252.52319 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 1 3.8655 0.6008 0.5101 6 6 3.9397 1.5087 -1.4436 7 8 5.3584 1.6796 -1.4416 8 6 5.7994 2.8893 -0.8216 9 6 5.3654 2.8962 0.6465 10 6 3.8428 2.7468 0.7214 11 1 3.3671 3.6023 0.2417 12 7 3.4254 2.6769 2.1239 13 6 3.2095 3.8105 2.8201 14 8 3.3604 4.8892 2.2850 15 6 2.7844 3.7392 4.2511 16 8 2.7216 2.6652 4.8125 17 7 2.4706 4.8676 4.9180 18 6 2.1607 4.8108 6.3486 19 6 1.7226 6.1952 6.8309 20 6 2.3232 7.3617 6.0898 21 1 1.6837 8.0509 5.5584 22 6 3.6892 7.5493 6.0902 23 7 4.2065 8.6169 5.5225 24 14 4.8050 6.2870 6.8970 25 1 5.0953 5.1950 5.9333 26 1 6.0758 6.9383 7.3047 27 1 4.1309 5.7240 8.0945 28 6 1.4562 6.3703 8.3273 29 6 0.2871 6.3453 7.3408 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3632 0.5137 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 3.6865 0.5771 -1.9498 36 1 3.4736 2.3444 -1.9655 37 1 6.8861 2.9524 -0.8796 38 1 5.3578 3.7431 -1.3354 39 1 5.6622 3.8372 1.1097 40 1 5.8390 2.0660 1.1703 41 1 3.3046 1.8147 2.5515 42 1 2.4499 5.7173 4.4505 43 1 3.0471 4.4976 6.9003 44 1 1.3558 4.0956 6.5179 45 1 5.1675 8.7485 5.5225 46 1 1.5927 5.4992 8.9682 47 1 1.7158 7.3293 8.7758 48 1 -0.3456 5.4576 7.3325 49 1 -0.2222 7.2877 7.1400 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329119765.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:11 Heat of formation + Delta-G solvation = -135.130365 kcal Electronic energy + Delta-G solvation = -30947.026461 eV Core-core repulsion = 26682.371416 eV Total energy + Delta-G solvation = -4264.655046 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.70778 -39.71758 -38.17359 -37.80095 -36.99840 -35.31055 -33.48417 -32.26858 -32.00164 -31.59188 -29.80961 -27.45729 -25.82650 -25.15322 -23.88092 -23.03747 -22.72164 -21.56695 -20.82173 -19.87011 -19.35086 -18.20827 -17.37767 -16.99128 -16.76636 -16.36441 -16.09618 -15.78011 -15.56114 -15.28142 -14.98142 -14.83267 -14.58132 -14.24657 -13.89499 -13.83659 -13.50199 -13.33157 -13.04467 -12.90560 -12.75428 -12.57061 -12.42497 -12.24118 -11.92658 -11.79313 -11.55853 -11.38911 -11.27512 -11.08372 -10.83847 -10.77376 -10.54234 -10.35996 -10.20809 -9.74555 -9.66867 -9.32486 -9.20261 -9.08671 -8.84441 -8.67870 -8.31102 -6.24622 -4.28801 1.81887 2.64308 3.05765 3.23656 3.32775 3.34900 3.60214 3.63358 4.00542 4.22799 4.30912 4.44268 4.59744 4.65175 4.74415 4.76155 4.84321 4.88997 4.95850 5.03876 5.07542 5.12561 5.25672 5.28555 5.35312 5.39953 5.54774 5.61085 5.64105 5.69348 5.83644 5.87379 5.88684 6.08747 6.15389 6.28528 6.39036 6.47919 6.56458 6.63769 6.77731 6.93433 6.97052 7.09642 7.25323 7.60262 7.87794 8.19662 8.35029 8.57085 8.79703 9.36580 10.85521 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.013989 B = 0.003209 C = 0.002801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2001.126321 B = 8722.754336 C = 9995.445465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.055 3.945 3 O -0.370 6.370 4 C 0.051 3.949 5 H 0.076 0.924 6 C 0.046 3.954 7 O -0.377 6.377 8 C 0.061 3.939 9 C -0.168 4.168 10 C 0.148 3.852 11 H 0.102 0.898 12 N -0.698 5.698 13 C 0.510 3.490 14 O -0.506 6.506 15 C 0.496 3.504 16 O -0.548 6.548 17 N -0.661 5.661 18 C 0.142 3.858 19 C -0.017 4.017 20 C -0.498 4.498 21 H 0.082 0.918 22 C 0.088 3.912 23 N -0.881 5.881 24 Si 0.871 3.129 25 H -0.275 1.275 26 H -0.293 1.293 27 H -0.257 1.257 28 C -0.190 4.190 29 C -0.179 4.179 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.049 0.951 34 H 0.051 0.949 35 H 0.099 0.901 36 H 0.065 0.935 37 H 0.103 0.897 38 H 0.059 0.941 39 H 0.092 0.908 40 H 0.078 0.922 41 H 0.410 0.590 42 H 0.428 0.572 43 H 0.058 0.942 44 H 0.064 0.936 45 H 0.268 0.732 46 H 0.070 0.930 47 H 0.090 0.910 48 H 0.074 0.926 49 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.244 -17.005 -12.321 21.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.022 4.022 3 O -0.289 6.289 4 C -0.008 4.008 5 H 0.094 0.906 6 C -0.032 4.032 7 O -0.295 6.295 8 C -0.016 4.016 9 C -0.207 4.207 10 C 0.043 3.957 11 H 0.120 0.880 12 N -0.352 5.352 13 C 0.291 3.709 14 O -0.380 6.380 15 C 0.275 3.725 16 O -0.428 6.428 17 N -0.316 5.316 18 C 0.018 3.982 19 C -0.019 4.019 20 C -0.535 4.535 21 H 0.100 0.900 22 C -0.117 4.117 23 N -0.516 5.516 24 Si 0.699 3.301 25 H -0.201 1.201 26 H -0.220 1.220 27 H -0.181 1.181 28 C -0.228 4.228 29 C -0.216 4.216 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.117 0.883 36 H 0.083 0.917 37 H 0.121 0.879 38 H 0.078 0.922 39 H 0.110 0.890 40 H 0.097 0.903 41 H 0.246 0.754 42 H 0.271 0.729 43 H 0.076 0.924 44 H 0.082 0.918 45 H 0.078 0.922 46 H 0.089 0.911 47 H 0.108 0.892 48 H 0.093 0.907 49 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -1.006 -16.761 -12.425 20.888 hybrid contribution 0.662 -0.672 0.670 1.157 sum -0.343 -17.433 -11.755 21.029 Atomic orbital electron populations 1.21744 0.93416 1.02313 1.03455 1.22589 0.95955 0.83476 1.00158 1.88013 1.19220 1.26708 1.94949 1.23030 0.82595 0.98252 0.96913 0.90574 1.23010 0.81793 1.03165 0.95241 1.87960 1.20852 1.41548 1.79159 1.22660 1.00720 0.86983 0.91240 1.22701 0.94825 1.04757 0.98407 1.21136 0.94556 0.98441 0.81577 0.87954 1.45597 1.68788 1.09347 1.11443 1.20382 0.78263 0.84499 0.87771 1.90802 1.49112 1.27878 1.70204 1.19986 0.80000 0.85311 0.87167 1.90677 1.53986 1.28527 1.69593 1.46168 1.63974 1.10652 1.10785 1.21175 0.99487 0.97914 0.79592 1.19555 0.95752 0.93119 0.93438 1.20272 0.92192 1.08477 1.32572 0.89979 1.24930 0.97977 0.94872 0.93929 1.69877 1.12700 1.26256 1.42817 0.87076 0.80130 0.81838 0.81066 1.20114 1.21969 1.18113 1.23070 1.04181 1.01514 0.94013 1.22869 0.91340 1.01368 1.05981 0.91037 0.91536 0.91796 0.93313 0.93061 0.88322 0.91684 0.87916 0.92221 0.88975 0.90325 0.75449 0.72935 0.92397 0.91794 0.92202 0.91107 0.89192 0.90741 0.89519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 10.28 37.16 0.38 -0.76 16 2 C 0.05 0.44 6.47 37.16 0.24 0.68 16 3 O -0.37 -3.96 9.92 -35.23 -0.35 -4.31 16 4 C 0.05 0.50 2.31 -26.59 -0.06 0.44 16 5 H 0.08 0.67 7.79 -51.93 -0.40 0.27 16 6 C 0.05 0.40 6.47 37.20 0.24 0.64 16 7 O -0.38 -3.73 10.77 -35.23 -0.38 -4.11 16 8 C 0.06 0.56 6.84 37.20 0.25 0.81 16 9 C -0.17 -1.82 5.72 -26.59 -0.15 -1.98 16 10 C 0.15 1.79 2.22 -67.75 -0.15 1.64 16 11 H 0.10 1.40 7.58 -51.93 -0.39 1.01 16 12 N -0.70 -9.94 5.00 -54.06 -0.27 -10.21 16 13 C 0.51 9.33 7.86 -11.59 -0.09 9.24 16 14 O -0.51 -10.50 16.16 5.50 0.09 -10.41 16 15 C 0.50 10.01 7.88 -11.59 -0.09 9.92 16 16 O -0.55 -11.32 16.47 5.49 0.09 -11.23 16 17 N -0.66 -14.30 4.65 -60.73 -0.28 -14.58 16 18 C 0.14 3.02 4.68 -4.04 -0.02 3.00 16 19 C -0.02 -0.39 1.31 -155.63 -0.20 -0.59 16 20 C -0.50 -13.03 7.69 -34.44 -0.26 -13.30 16 21 H 0.08 2.34 8.06 -52.49 -0.42 1.92 16 22 C 0.09 2.41 5.31 -17.82 -0.09 2.31 16 23 N -0.88 -25.71 13.96 55.43 0.77 -24.94 16 24 Si 0.87 21.34 24.17 -169.99 -4.11 17.23 16 25 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 26 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 27 H -0.26 -5.98 6.20 56.52 0.35 -5.63 16 28 C -0.19 -3.83 9.25 -26.73 -0.25 -4.08 16 29 C -0.18 -3.45 9.89 -26.69 -0.26 -3.72 16 30 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.05 0.31 7.96 -51.93 -0.41 -0.10 16 34 H 0.05 0.39 8.09 -51.93 -0.42 -0.03 16 35 H 0.10 0.69 7.96 -51.93 -0.41 0.28 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 40 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 41 H 0.41 5.32 8.09 -40.82 -0.33 4.99 16 42 H 0.43 9.88 6.38 -40.82 -0.26 9.62 16 43 H 0.06 1.29 5.28 -51.93 -0.27 1.01 16 44 H 0.06 1.25 7.84 -51.93 -0.41 0.85 16 45 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 46 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 47 H 0.09 1.87 8.14 -51.93 -0.42 1.44 16 48 H 0.07 1.28 8.04 -51.92 -0.42 0.86 16 49 H 0.09 1.68 8.14 -51.93 -0.42 1.25 16 LS Contribution 396.62 15.07 5.98 5.98 Total: -1.00 -30.97 396.62 -6.98 -37.95 By element: Atomic # 1 Polarization: 22.38 SS G_CDS: -7.99 Total: 14.39 kcal Atomic # 6 Polarization: 4.77 SS G_CDS: -0.52 Total: 4.25 kcal Atomic # 7 Polarization: -49.95 SS G_CDS: 0.22 Total: -49.73 kcal Atomic # 8 Polarization: -29.52 SS G_CDS: -0.55 Total: -30.06 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.11 Total: 17.23 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -30.97 -6.98 -37.95 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329119765.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.185 kcal (2) G-P(sol) polarization free energy of solvation -30.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds