Wall clock time and date at job start Tue Mar 31 2020 22:45:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46497 * 109.47493 * 2 1 4 4 C 1.34779 * 119.99883 * 83.17493 * 3 2 1 5 5 O 1.21344 * 120.00237 * 184.08623 * 4 3 2 6 6 C 1.49452 * 119.99613 * 4.08756 * 4 3 2 7 7 O 1.21346 * 120.00390 * 354.24422 * 6 4 3 8 8 N 1.34782 * 119.99731 * 174.24577 * 6 4 3 9 9 C 1.47025 * 125.64927 * 0.04529 * 8 6 4 10 10 C 1.54364 * 107.29111 * 181.05356 * 9 8 6 11 11 C 1.55165 * 102.91898 * 22.13946 * 10 9 8 12 12 O 1.42899 * 111.00748 * 82.64090 * 11 10 9 13 13 C 1.50697 * 111.00290 * 206.45435 * 11 10 9 14 14 H 1.08003 * 119.99844 * 356.81742 * 13 11 10 15 15 C 1.37877 * 120.00207 * 177.09195 * 13 11 10 16 16 N 1.31516 * 119.99605 * 359.72290 * 15 13 11 17 17 Si 1.86798 * 120.00138 * 179.72368 * 15 13 11 18 18 H 1.48495 * 109.47388 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.46831 * 120.00269 * 17 15 13 20 20 H 1.48497 * 109.46870 * 239.99827 * 17 15 13 21 21 C 1.47419 * 125.64843 * 180.02562 * 8 6 4 22 22 C 1.46497 * 120.00342 * 263.18302 * 3 2 1 23 23 H 1.09003 * 109.52208 * 0.11859 * 22 3 2 24 24 C 1.53178 * 109.52126 * 239.99833 * 22 3 2 25 25 C 1.53175 * 109.03813 * 183.10975 * 24 22 3 26 26 C 1.53093 * 109.16374 * 56.97883 * 25 24 22 27 27 O 1.42906 * 109.41363 * 302.39535 * 26 25 24 28 28 C 1.42897 * 114.09852 * 61.15493 * 27 26 25 29 29 H 1.09003 * 109.47344 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46882 * 299.99494 * 1 2 3 31 31 H 1.08995 * 109.47631 * 59.99435 * 1 2 3 32 32 H 1.09010 * 109.46841 * 240.00262 * 2 1 3 33 33 H 1.09004 * 109.47429 * 120.00604 * 2 1 3 34 34 H 1.09007 * 109.87594 * 300.43710 * 9 8 6 35 35 H 1.08993 * 109.88478 * 61.44443 * 9 8 6 36 36 H 1.09000 * 110.70825 * 263.79490 * 10 9 8 37 37 H 1.09004 * 110.75775 * 140.50075 * 10 9 8 38 38 H 0.96696 * 113.99752 * 183.18598 * 12 11 10 39 39 H 0.97001 * 119.99809 * 180.02562 * 16 15 13 40 40 H 1.08996 * 110.37281 * 37.06644 * 21 8 6 41 41 H 1.09006 * 110.45942 * 274.79246 * 21 8 6 42 42 H 1.09000 * 109.54625 * 302.97882 * 24 22 3 43 43 H 1.09001 * 109.54892 * 63.24384 * 24 22 3 44 44 H 1.08998 * 109.52715 * 176.88172 * 25 24 22 45 45 H 1.09002 * 109.52065 * 297.01213 * 25 24 22 46 46 H 1.09001 * 109.47930 * 62.37043 * 26 25 24 47 47 H 1.08994 * 109.48512 * 182.39742 * 26 25 24 48 48 H 1.09000 * 109.48099 * 178.85785 * 28 27 26 49 49 H 1.08999 * 109.48413 * 58.82816 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1123 2.0627 1.1590 5 8 2.4458 3.2294 1.1515 6 6 1.8056 1.3815 2.4533 7 8 1.3721 0.2481 2.4547 8 7 2.0105 2.0260 3.6192 9 6 2.5277 3.3948 3.7621 10 6 2.6182 3.6956 5.2735 11 6 2.6808 2.2800 5.9058 12 8 4.0129 1.7639 5.8756 13 6 2.1413 2.2926 7.3128 14 1 1.8268 3.2230 7.7623 15 6 2.0543 1.1173 8.0284 16 7 2.4372 -0.0156 7.4810 17 14 1.3928 1.1340 9.7752 18 1 1.0337 2.5239 10.1553 19 1 0.1871 0.2709 9.8562 20 1 2.4323 0.6205 10.7031 21 6 1.7526 1.4755 4.9622 22 6 2.4046 2.0216 -1.2597 23 1 2.2595 1.3224 -2.0833 24 6 3.8780 2.4352 -1.1930 25 6 4.2490 3.1722 -2.4835 26 6 3.3161 4.3728 -2.6625 27 8 1.9603 3.9215 -2.6855 28 6 1.5430 3.2666 -1.4860 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 3.5174 3.4661 3.3107 35 1 1.8495 4.0996 3.2812 36 1 1.7319 4.2311 5.6137 37 1 3.5224 4.2600 5.5016 38 1 4.0931 0.8622 6.2155 39 1 2.3757 -0.8426 7.9843 40 1 2.0065 0.4160 4.9931 41 1 0.7091 1.6230 5.2405 42 1 4.0334 3.0944 -0.3390 43 1 4.5016 1.5474 -1.0880 44 1 5.2806 3.5187 -2.4215 45 1 4.1419 2.4968 -3.3323 46 1 3.4540 5.0671 -1.8337 47 1 3.5477 4.8764 -3.6010 48 1 0.4971 2.9732 -1.5770 49 1 1.6577 3.9464 -0.6418 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329714642.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:20 Heat of formation + Delta-G solvation = -147.243700 kcal Electronic energy + Delta-G solvation = -32032.050080 eV Core-core repulsion = 27766.869761 eV Total energy + Delta-G solvation = -4265.180319 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.00093 -39.42900 -38.21132 -37.33837 -36.08125 -34.22188 -33.40546 -32.24096 -31.37129 -30.27034 -29.38935 -27.95214 -26.00744 -25.24152 -24.56536 -23.43387 -22.86539 -21.45996 -20.60705 -19.68878 -18.62946 -17.28684 -17.04631 -16.87250 -16.34737 -16.02254 -15.60121 -15.49165 -15.20409 -14.90049 -14.84594 -14.48896 -14.30284 -13.81516 -13.63323 -13.21664 -13.08105 -13.04694 -12.92579 -12.84021 -12.53206 -12.39780 -12.08984 -11.83108 -11.67156 -11.60134 -11.38797 -11.20039 -11.11427 -11.04344 -10.90172 -10.71537 -10.59379 -10.49414 -10.34663 -10.22687 -9.80940 -9.42108 -8.93919 -8.72766 -8.70130 -8.44576 -7.90126 -6.34096 -4.43251 1.74429 2.46559 3.16567 3.25872 3.29382 3.50972 3.59118 3.83357 4.22196 4.41489 4.62488 4.67480 4.69009 4.75641 4.93842 4.98614 5.06081 5.18168 5.35810 5.42071 5.45132 5.47396 5.57647 5.61032 5.66252 5.70003 5.76421 5.77794 5.82197 5.91121 6.01841 6.02347 6.08922 6.26310 6.27783 6.47016 6.47979 6.69834 6.77419 6.82465 7.00052 7.11165 7.15750 7.27158 7.68923 7.77061 7.96044 8.03201 8.42766 8.61157 9.25902 9.36126 10.73246 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.020953 B = 0.002989 C = 0.002793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.005916 B = 9365.574259 C =10023.519046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.092 3.908 3 N -0.584 5.584 4 C 0.512 3.488 5 O -0.516 6.516 6 C 0.506 3.494 7 O -0.528 6.528 8 N -0.573 5.573 9 C 0.112 3.888 10 C -0.122 4.122 11 C 0.249 3.751 12 O -0.582 6.582 13 C -0.536 4.536 14 H 0.069 0.931 15 C 0.071 3.929 16 N -0.895 5.895 17 Si 0.905 3.095 18 H -0.271 1.271 19 H -0.282 1.282 20 H -0.281 1.281 21 C 0.092 3.908 22 C 0.119 3.881 23 H 0.095 0.905 24 C -0.142 4.142 25 C -0.149 4.149 26 C 0.058 3.942 27 O -0.381 6.381 28 C 0.044 3.956 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.046 0.954 32 H 0.069 0.931 33 H 0.119 0.881 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.383 0.617 39 H 0.270 0.730 40 H 0.088 0.912 41 H 0.067 0.933 42 H 0.087 0.913 43 H 0.068 0.932 44 H 0.076 0.924 45 H 0.070 0.930 46 H 0.055 0.945 47 H 0.093 0.907 48 H 0.091 0.909 49 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.275 3.037 -17.813 18.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.030 4.030 3 N -0.319 5.319 4 C 0.296 3.704 5 O -0.392 6.392 6 C 0.289 3.711 7 O -0.408 6.408 8 N -0.304 5.304 9 C -0.011 4.011 10 C -0.160 4.160 11 C 0.208 3.792 12 O -0.391 6.391 13 C -0.574 4.574 14 H 0.087 0.913 15 C -0.133 4.133 16 N -0.534 5.534 17 Si 0.732 3.268 18 H -0.195 1.195 19 H -0.208 1.208 20 H -0.207 1.207 21 C -0.029 4.029 22 C 0.015 3.985 23 H 0.113 0.887 24 C -0.180 4.180 25 C -0.187 4.187 26 C -0.019 4.019 27 O -0.298 6.298 28 C -0.034 4.034 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.065 0.935 32 H 0.088 0.912 33 H 0.136 0.864 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.096 0.904 37 H 0.095 0.905 38 H 0.234 0.766 39 H 0.080 0.920 40 H 0.107 0.893 41 H 0.085 0.915 42 H 0.106 0.894 43 H 0.087 0.913 44 H 0.095 0.905 45 H 0.088 0.912 46 H 0.073 0.927 47 H 0.111 0.889 48 H 0.109 0.891 49 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 0.229 3.464 -18.253 18.580 hybrid contribution -0.338 -0.867 1.293 1.593 sum -0.109 2.596 -16.959 17.157 Atomic orbital electron populations 1.22071 0.95500 1.02372 1.01697 1.22211 0.95204 0.80851 1.04719 1.47907 1.63741 1.14992 1.05293 1.20450 0.78146 0.86560 0.85280 1.90652 1.45723 1.15890 1.86915 1.19557 0.81159 0.86235 0.84163 1.90621 1.46292 1.17662 1.86224 1.48665 1.59370 1.16175 1.06213 1.22136 0.98973 0.82114 0.97842 1.22721 1.02139 0.98871 0.92225 1.19625 0.80293 0.87326 0.91958 1.86107 1.29379 1.36247 1.87397 1.21525 1.43364 0.94536 0.98018 0.91316 1.25089 0.94025 0.95229 0.98917 1.69652 1.47218 0.98733 1.37749 0.86328 0.78604 0.78352 0.83513 1.19540 1.20758 1.20731 1.23478 1.00706 1.01067 0.77633 1.21788 0.95233 0.95801 0.85633 0.88663 1.22040 0.95031 1.01628 0.99311 1.22148 1.00281 0.98297 0.97963 1.22614 0.81698 0.95332 1.02276 1.87916 1.28089 1.76083 1.37761 1.23065 0.97927 0.93735 0.88639 0.91485 0.91908 0.93474 0.91242 0.86352 0.91499 0.91583 0.90380 0.90549 0.76584 0.91967 0.89341 0.91463 0.89431 0.91283 0.90496 0.91160 0.92707 0.88901 0.89098 0.90202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.87 9.74 37.16 0.36 -1.50 16 2 C 0.09 1.12 5.71 -4.05 -0.02 1.10 16 3 N -0.58 -7.80 2.45 -166.46 -0.41 -8.21 16 4 C 0.51 8.40 7.04 -11.58 -0.08 8.32 16 5 O -0.52 -8.78 10.34 5.50 0.06 -8.72 16 6 C 0.51 9.72 7.69 -11.58 -0.09 9.63 16 7 O -0.53 -10.61 12.11 5.50 0.07 -10.55 16 8 N -0.57 -11.73 3.33 -171.01 -0.57 -12.29 16 9 C 0.11 2.11 5.50 -3.04 -0.02 2.09 16 10 C -0.12 -2.43 6.13 -24.87 -0.15 -2.59 16 11 C 0.25 5.89 0.88 -89.63 -0.08 5.81 16 12 O -0.58 -14.61 13.17 -35.23 -0.46 -15.07 16 13 C -0.54 -13.60 8.25 -34.44 -0.28 -13.89 16 14 H 0.07 1.72 7.78 -52.48 -0.41 1.31 16 15 C 0.07 1.79 5.29 -17.82 -0.09 1.69 16 16 N -0.89 -23.10 10.69 55.43 0.59 -22.51 16 17 Si 0.90 19.90 29.54 -169.99 -5.02 14.88 16 18 H -0.27 -5.91 7.11 56.52 0.40 -5.50 16 19 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 20 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 21 C 0.09 2.12 5.51 -2.54 -0.01 2.11 16 22 C 0.12 1.36 2.75 -67.80 -0.19 1.17 16 23 H 0.10 0.94 7.71 -51.93 -0.40 0.54 16 24 C -0.14 -1.58 5.28 -26.55 -0.14 -1.72 16 25 C -0.15 -1.31 6.14 -26.59 -0.16 -1.48 16 26 C 0.06 0.55 6.84 37.21 0.25 0.80 16 27 O -0.38 -4.53 10.77 -35.23 -0.38 -4.90 16 28 C 0.04 0.53 6.08 37.20 0.23 0.76 16 29 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.06 0.90 7.04 -51.93 -0.37 0.54 16 31 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.67 7.78 -51.92 -0.40 0.26 16 33 H 0.12 1.75 5.38 -51.93 -0.28 1.47 16 34 H 0.07 1.27 7.72 -51.92 -0.40 0.87 16 35 H 0.07 1.15 7.57 -51.93 -0.39 0.76 16 36 H 0.08 1.46 8.03 -51.93 -0.42 1.05 16 37 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 38 H 0.38 9.86 7.24 45.56 0.33 10.19 16 39 H 0.27 6.69 8.31 -40.82 -0.34 6.35 16 40 H 0.09 2.26 7.48 -51.93 -0.39 1.87 16 41 H 0.07 1.58 8.03 -51.93 -0.42 1.17 16 42 H 0.09 1.18 6.25 -51.93 -0.32 0.86 16 43 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 45 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 48 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 49 H 0.08 1.12 5.95 -51.93 -0.31 0.81 16 LS Contribution 378.08 15.07 5.70 5.70 Total: -1.00 -27.36 378.08 -8.03 -35.39 By element: Atomic # 1 Polarization: 21.10 SS G_CDS: -7.12 Total: 13.98 kcal Atomic # 6 Polarization: 12.79 SS G_CDS: -0.48 Total: 12.31 kcal Atomic # 7 Polarization: -42.63 SS G_CDS: -0.38 Total: -43.01 kcal Atomic # 8 Polarization: -38.53 SS G_CDS: -0.72 Total: -39.24 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -5.02 Total: 14.88 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -27.36 -8.03 -35.39 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329714642.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.855 kcal (2) G-P(sol) polarization free energy of solvation -27.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds