Wall clock time and date at job start Tue Mar 31 2020 22:45:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46497 * 109.47493 * 2 1 4 4 C 1.34779 * 119.99883 * 83.17493 * 3 2 1 5 5 O 1.21344 * 120.00237 * 184.08623 * 4 3 2 6 6 C 1.49452 * 119.99613 * 4.08756 * 4 3 2 7 7 O 1.21346 * 120.00390 * 354.24422 * 6 4 3 8 8 N 1.34782 * 119.99731 * 174.24577 * 6 4 3 9 9 C 1.47025 * 125.64927 * 0.04529 * 8 6 4 10 10 C 1.54364 * 107.29111 * 181.05356 * 9 8 6 11 11 C 1.55165 * 102.91898 * 22.13946 * 10 9 8 12 12 O 1.42899 * 111.00748 * 82.64090 * 11 10 9 13 13 C 1.50697 * 111.00290 * 206.45435 * 11 10 9 14 14 H 1.08003 * 119.99844 * 356.81742 * 13 11 10 15 15 C 1.37877 * 120.00207 * 177.09195 * 13 11 10 16 16 N 1.31516 * 119.99605 * 359.72290 * 15 13 11 17 17 Si 1.86798 * 120.00138 * 179.72368 * 15 13 11 18 18 H 1.48495 * 109.47388 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.46831 * 120.00269 * 17 15 13 20 20 H 1.48497 * 109.46870 * 239.99827 * 17 15 13 21 21 C 1.47419 * 125.64843 * 180.02562 * 8 6 4 22 22 C 1.46497 * 120.00342 * 263.18302 * 3 2 1 23 23 H 1.09003 * 109.52208 * 0.11859 * 22 3 2 24 24 C 1.53178 * 109.52126 * 239.99833 * 22 3 2 25 25 C 1.53175 * 109.03813 * 183.10975 * 24 22 3 26 26 C 1.53093 * 109.16374 * 56.97883 * 25 24 22 27 27 O 1.42906 * 109.41363 * 302.39535 * 26 25 24 28 28 C 1.42897 * 114.09852 * 61.15493 * 27 26 25 29 29 H 1.09003 * 109.47344 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46882 * 299.99494 * 1 2 3 31 31 H 1.08995 * 109.47631 * 59.99435 * 1 2 3 32 32 H 1.09010 * 109.46841 * 240.00262 * 2 1 3 33 33 H 1.09004 * 109.47429 * 120.00604 * 2 1 3 34 34 H 1.09007 * 109.87594 * 300.43710 * 9 8 6 35 35 H 1.08993 * 109.88478 * 61.44443 * 9 8 6 36 36 H 1.09000 * 110.70825 * 263.79490 * 10 9 8 37 37 H 1.09004 * 110.75775 * 140.50075 * 10 9 8 38 38 H 0.96696 * 113.99752 * 183.18598 * 12 11 10 39 39 H 0.97001 * 119.99809 * 180.02562 * 16 15 13 40 40 H 1.08996 * 110.37281 * 37.06644 * 21 8 6 41 41 H 1.09006 * 110.45942 * 274.79246 * 21 8 6 42 42 H 1.09000 * 109.54625 * 302.97882 * 24 22 3 43 43 H 1.09001 * 109.54892 * 63.24384 * 24 22 3 44 44 H 1.08998 * 109.52715 * 176.88172 * 25 24 22 45 45 H 1.09002 * 109.52065 * 297.01213 * 25 24 22 46 46 H 1.09001 * 109.47930 * 62.37043 * 26 25 24 47 47 H 1.08994 * 109.48512 * 182.39742 * 26 25 24 48 48 H 1.09000 * 109.48099 * 178.85785 * 28 27 26 49 49 H 1.08999 * 109.48413 * 58.82816 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1123 2.0627 1.1590 5 8 2.4458 3.2294 1.1515 6 6 1.8056 1.3815 2.4533 7 8 1.3721 0.2481 2.4547 8 7 2.0105 2.0260 3.6192 9 6 2.5277 3.3948 3.7621 10 6 2.6182 3.6956 5.2735 11 6 2.6808 2.2800 5.9058 12 8 4.0129 1.7639 5.8756 13 6 2.1413 2.2926 7.3128 14 1 1.8268 3.2230 7.7623 15 6 2.0543 1.1173 8.0284 16 7 2.4372 -0.0156 7.4810 17 14 1.3928 1.1340 9.7752 18 1 1.0337 2.5239 10.1553 19 1 0.1871 0.2709 9.8562 20 1 2.4323 0.6205 10.7031 21 6 1.7526 1.4755 4.9622 22 6 2.4046 2.0216 -1.2597 23 1 2.2595 1.3224 -2.0833 24 6 3.8780 2.4352 -1.1930 25 6 4.2490 3.1722 -2.4835 26 6 3.3161 4.3728 -2.6625 27 8 1.9603 3.9215 -2.6855 28 6 1.5430 3.2666 -1.4860 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 3.5174 3.4661 3.3107 35 1 1.8495 4.0996 3.2812 36 1 1.7319 4.2311 5.6137 37 1 3.5224 4.2600 5.5016 38 1 4.0931 0.8622 6.2155 39 1 2.3757 -0.8426 7.9843 40 1 2.0065 0.4160 4.9931 41 1 0.7091 1.6230 5.2405 42 1 4.0334 3.0944 -0.3390 43 1 4.5016 1.5474 -1.0880 44 1 5.2806 3.5187 -2.4215 45 1 4.1419 2.4968 -3.3323 46 1 3.4540 5.0671 -1.8337 47 1 3.5477 4.8764 -3.6010 48 1 0.4971 2.9732 -1.5770 49 1 1.6577 3.9464 -0.6418 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329714642.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:20 Heat of formation + Delta-G solvation = -165.889528 kcal Electronic energy + Delta-G solvation = -32032.858624 eV Core-core repulsion = 27766.869761 eV Total energy + Delta-G solvation = -4265.988863 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.25645 -40.71070 -39.51562 -38.86194 -37.32461 -35.94501 -34.28098 -34.20809 -32.26302 -31.95400 -30.44173 -29.70980 -27.67499 -26.12606 -25.97702 -24.43100 -24.26446 -22.71167 -21.62142 -21.47263 -19.98545 -19.16015 -18.39338 -18.02559 -17.43823 -17.29262 -17.08636 -16.82523 -16.58252 -16.36427 -16.08367 -15.73119 -15.56589 -14.97550 -14.87928 -14.71707 -14.65594 -14.45255 -14.13453 -13.95965 -13.78077 -13.53540 -13.46597 -13.34490 -13.13153 -12.88293 -12.74678 -12.55636 -12.43750 -12.34871 -12.22571 -12.16131 -12.12976 -12.01468 -11.67264 -11.38517 -11.20471 -10.74208 -10.68022 -10.39969 -10.20145 -9.85661 -9.53347 -8.26891 -6.43226 0.34332 1.18956 1.41797 1.45579 1.55969 2.08921 2.27424 2.39543 2.92613 2.99204 3.11614 3.66521 3.75286 3.76665 3.88770 3.95963 4.05685 4.11413 4.14612 4.19958 4.30575 4.37965 4.41420 4.52555 4.60539 4.63911 4.67551 4.72093 4.77442 4.82403 4.87025 4.94648 5.00274 5.03536 5.05206 5.06870 5.14102 5.22988 5.32406 5.33575 5.41982 5.48357 5.73999 5.94098 6.02917 6.13697 6.33031 6.58478 6.66761 6.93668 7.27780 7.35253 8.79121 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.020953 B = 0.002989 C = 0.002793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.005916 B = 9365.574259 C =10023.519046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.089 3.911 3 N -0.572 5.572 4 C 0.515 3.485 5 O -0.524 6.524 6 C 0.498 3.502 7 O -0.541 6.541 8 N -0.584 5.584 9 C 0.122 3.878 10 C -0.116 4.116 11 C 0.234 3.766 12 O -0.589 6.589 13 C -0.555 4.555 14 H 0.069 0.931 15 C 0.028 3.972 16 N -0.915 5.915 17 Si 0.965 3.035 18 H -0.266 1.266 19 H -0.281 1.281 20 H -0.280 1.280 21 C 0.109 3.891 22 C 0.119 3.881 23 H 0.123 0.877 24 C -0.142 4.142 25 C -0.141 4.141 26 C 0.051 3.949 27 O -0.389 6.389 28 C 0.049 3.951 29 H 0.079 0.921 30 H 0.030 0.970 31 H 0.066 0.934 32 H 0.107 0.893 33 H 0.091 0.909 34 H 0.065 0.935 35 H 0.083 0.917 36 H 0.091 0.909 37 H 0.083 0.917 38 H 0.376 0.624 39 H 0.271 0.729 40 H 0.056 0.944 41 H 0.055 0.945 42 H 0.060 0.940 43 H 0.073 0.927 44 H 0.091 0.909 45 H 0.086 0.914 46 H 0.044 0.956 47 H 0.117 0.883 48 H 0.096 0.904 49 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.259 3.456 -19.849 20.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.032 4.032 3 N -0.306 5.306 4 C 0.297 3.703 5 O -0.401 6.401 6 C 0.282 3.718 7 O -0.421 6.421 8 N -0.316 5.316 9 C 0.000 4.000 10 C -0.153 4.153 11 C 0.193 3.807 12 O -0.397 6.397 13 C -0.593 4.593 14 H 0.087 0.913 15 C -0.173 4.173 16 N -0.554 5.554 17 Si 0.790 3.210 18 H -0.190 1.190 19 H -0.207 1.207 20 H -0.206 1.206 21 C -0.014 4.014 22 C 0.016 3.984 23 H 0.141 0.859 24 C -0.180 4.180 25 C -0.179 4.179 26 C -0.025 4.025 27 O -0.307 6.307 28 C -0.029 4.029 29 H 0.098 0.902 30 H 0.049 0.951 31 H 0.085 0.915 32 H 0.126 0.874 33 H 0.109 0.891 34 H 0.084 0.916 35 H 0.101 0.899 36 H 0.109 0.891 37 H 0.102 0.898 38 H 0.226 0.774 39 H 0.080 0.920 40 H 0.075 0.925 41 H 0.073 0.927 42 H 0.079 0.921 43 H 0.091 0.909 44 H 0.109 0.891 45 H 0.104 0.896 46 H 0.062 0.938 47 H 0.135 0.865 48 H 0.114 0.886 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.217 3.890 -20.331 20.701 hybrid contribution -0.322 -1.037 1.846 2.142 sum -0.105 2.853 -18.484 18.704 Atomic orbital electron populations 1.22013 0.95013 1.03028 1.01005 1.22264 0.95553 0.80125 1.05220 1.47961 1.62396 1.15234 1.04994 1.19897 0.78892 0.86437 0.85057 1.90657 1.46517 1.16031 1.86909 1.20235 0.80397 0.86196 0.84967 1.90624 1.46395 1.18324 1.86750 1.48691 1.60297 1.16824 1.05776 1.22102 0.99252 0.81578 0.97079 1.22725 1.03142 0.96861 0.92611 1.19844 0.79607 0.89336 0.91896 1.86099 1.30487 1.35775 1.87358 1.21800 1.43730 0.94713 0.99072 0.91278 1.25798 0.94238 0.94947 1.02281 1.69753 1.47702 0.99084 1.38843 0.85393 0.77832 0.78397 0.79328 1.18968 1.20678 1.20626 1.23004 0.99746 0.99173 0.79438 1.22001 0.95340 0.96099 0.84936 0.85878 1.22023 0.94834 1.01515 0.99632 1.22118 1.00783 0.97923 0.97037 1.22816 0.80854 0.95666 1.03176 1.87910 1.29432 1.76111 1.37270 1.22929 0.98421 0.93455 0.88076 0.90228 0.95077 0.91545 0.87448 0.89088 0.91642 0.89906 0.89075 0.89796 0.77400 0.91961 0.92519 0.92683 0.92137 0.90857 0.89086 0.89578 0.93785 0.86507 0.88584 0.92620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.38 9.74 71.98 0.70 -2.68 16 2 C 0.09 2.04 5.71 86.38 0.49 2.54 16 3 N -0.57 -14.51 2.45 -798.91 -1.95 -16.46 16 4 C 0.51 16.79 7.04 87.27 0.61 17.41 16 5 O -0.52 -17.75 10.34 -3.23 -0.03 -17.78 16 6 C 0.50 19.54 7.69 87.27 0.67 20.21 16 7 O -0.54 -22.41 12.11 -3.23 -0.04 -22.45 16 8 N -0.58 -24.44 3.33 -813.32 -2.71 -27.15 16 9 C 0.12 4.58 5.50 86.74 0.48 5.06 16 10 C -0.12 -4.60 6.13 31.80 0.20 -4.41 16 11 C 0.23 11.28 0.88 -10.15 -0.01 11.27 16 12 O -0.59 -30.30 13.17 -148.98 -1.96 -32.26 16 13 C -0.56 -28.48 8.25 25.60 0.21 -28.27 16 14 H 0.07 3.45 7.78 -2.91 -0.02 3.43 16 15 C 0.03 1.45 5.29 84.65 0.45 1.90 16 16 N -0.91 -48.37 10.69 21.45 0.23 -48.14 16 17 Si 0.97 41.00 29.54 68.60 2.03 43.03 16 18 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 19 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 20 H -0.28 -11.80 7.11 99.48 0.71 -11.10 16 21 C 0.11 5.19 5.51 86.85 0.48 5.67 16 22 C 0.12 2.43 2.75 45.08 0.12 2.55 16 23 H 0.12 1.92 7.71 -2.39 -0.02 1.90 16 24 C -0.14 -2.87 5.28 30.71 0.16 -2.71 16 25 C -0.14 -2.07 6.14 30.68 0.19 -1.88 16 26 C 0.05 0.86 6.84 72.01 0.49 1.35 16 27 O -0.39 -8.38 10.77 -148.98 -1.60 -9.98 16 28 C 0.05 1.10 6.08 72.01 0.44 1.54 16 29 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.03 0.88 7.04 -2.39 -0.02 0.86 16 31 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.11 1.68 7.78 -2.38 -0.02 1.66 16 33 H 0.09 2.66 5.38 -2.41 -0.01 2.65 16 34 H 0.07 2.47 7.72 -2.38 -0.02 2.45 16 35 H 0.08 2.83 7.57 -2.39 -0.02 2.81 16 36 H 0.09 3.36 8.03 -2.39 -0.02 3.34 16 37 H 0.08 3.19 8.14 -2.38 -0.02 3.17 16 38 H 0.38 20.11 7.24 -74.06 -0.54 19.57 16 39 H 0.27 13.68 8.31 -92.71 -0.77 12.91 16 40 H 0.06 3.04 7.48 -2.39 -0.02 3.02 16 41 H 0.05 2.70 8.03 -2.38 -0.02 2.68 16 42 H 0.06 1.58 6.25 -2.39 -0.01 1.57 16 43 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 44 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 45 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 46 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 47 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 48 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 49 H 0.06 1.54 5.95 -2.39 -0.01 1.52 16 Total: -1.00 -60.21 378.08 0.07 -60.14 By element: Atomic # 1 Polarization: 41.09 SS G_CDS: 0.43 Total: 41.51 kcal Atomic # 6 Polarization: 23.85 SS G_CDS: 5.69 Total: 29.54 kcal Atomic # 7 Polarization: -87.32 SS G_CDS: -4.43 Total: -91.75 kcal Atomic # 8 Polarization: -78.84 SS G_CDS: -3.64 Total: -82.47 kcal Atomic # 14 Polarization: 41.00 SS G_CDS: 2.03 Total: 43.03 kcal Total: -60.21 0.07 -60.14 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329714642.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.751 kcal (2) G-P(sol) polarization free energy of solvation -60.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds