Wall clock time and date at job start Tue Mar 31 2020 22:45:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46496 * 109.47123 * 2 1 4 4 C 1.34774 * 120.00556 * 83.17609 * 3 2 1 5 5 O 1.21349 * 120.00228 * 184.08588 * 4 3 2 6 6 C 1.49452 * 119.99696 * 4.08143 * 4 3 2 7 7 O 1.21345 * 120.00237 * 354.25465 * 6 4 3 8 8 N 1.34778 * 119.99942 * 174.25386 * 6 4 3 9 9 C 1.47294 * 125.79208 * 0.02562 * 8 6 4 10 10 C 1.54326 * 107.30414 * 178.92313 * 9 8 6 11 11 C 1.55159 * 102.94093 * 337.81713 * 10 9 8 12 12 O 1.42897 * 111.00519 * 277.42390 * 11 10 9 13 13 C 1.50700 * 111.03413 * 153.59258 * 11 10 9 14 14 H 1.08003 * 120.00224 * 6.32977 * 13 11 10 15 15 C 1.37876 * 120.00022 * 186.32774 * 13 11 10 16 16 N 1.31513 * 119.99917 * 0.02562 * 15 13 11 17 17 Si 1.86803 * 119.99972 * 179.97438 * 15 13 11 18 18 H 1.48491 * 109.47247 * 359.97438 * 17 15 13 19 19 H 1.48491 * 109.47093 * 120.00550 * 17 15 13 20 20 H 1.48506 * 109.46678 * 239.99901 * 17 15 13 21 21 C 1.47420 * 125.64885 * 179.97438 * 8 6 4 22 22 C 1.46507 * 119.99621 * 263.16815 * 3 2 1 23 23 H 1.09002 * 109.52076 * 0.02562 * 22 3 2 24 24 C 1.53186 * 109.51748 * 120.12823 * 22 3 2 25 25 C 1.53189 * 109.02774 * 176.82527 * 24 22 3 26 26 C 1.53086 * 109.21287 * 303.11148 * 25 24 22 27 27 O 1.42910 * 109.41699 * 57.58043 * 26 25 24 28 28 C 1.42903 * 114.09380 * 298.84159 * 27 26 25 29 29 H 1.08995 * 109.46945 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47011 * 300.00381 * 1 2 3 31 31 H 1.08998 * 109.46954 * 60.00306 * 1 2 3 32 32 H 1.08999 * 109.47011 * 239.99619 * 2 1 3 33 33 H 1.09006 * 109.46814 * 119.99329 * 2 1 3 34 34 H 1.08993 * 109.85483 * 59.50316 * 9 8 6 35 35 H 1.08994 * 109.99920 * 298.43048 * 9 8 6 36 36 H 1.09001 * 110.72059 * 219.45019 * 10 9 8 37 37 H 1.08994 * 110.87034 * 96.25043 * 10 9 8 38 38 H 0.96696 * 114.00237 * 173.65085 * 12 11 10 39 39 H 0.97007 * 119.99936 * 179.97438 * 16 15 13 40 40 H 1.09003 * 110.36629 * 85.26457 * 21 8 6 41 41 H 1.09004 * 110.37127 * 323.05416 * 21 8 6 42 42 H 1.09000 * 109.54312 * 296.75631 * 24 22 3 43 43 H 1.09000 * 109.54286 * 57.01835 * 24 22 3 44 44 H 1.09002 * 109.51934 * 183.17305 * 25 24 22 45 45 H 1.08997 * 109.51819 * 63.05281 * 25 24 22 46 46 H 1.09000 * 109.48506 * 297.59757 * 26 25 24 47 47 H 1.09002 * 109.49111 * 177.56557 * 26 25 24 48 48 H 1.09001 * 109.47783 * 301.17313 * 28 27 26 49 49 H 1.09005 * 109.47867 * 181.13962 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1123 2.0628 1.1588 5 8 2.4458 3.2296 1.1512 6 6 1.8056 1.3818 2.4533 7 8 1.3723 0.2483 2.4548 8 7 2.0103 2.0265 3.6190 9 6 2.5286 3.3974 3.7658 10 6 2.5664 3.7147 5.2756 11 6 1.5373 2.7151 5.8666 12 8 0.2052 3.2167 5.7401 13 6 1.8570 2.3964 7.3044 14 1 2.6490 2.9270 7.8120 15 6 1.1384 1.4274 7.9720 16 7 0.1743 0.7809 7.3538 17 14 1.5352 1.0318 9.7540 18 1 2.6550 1.8915 10.2144 19 1 0.3381 1.2844 10.5955 20 1 1.9283 -0.3957 9.8684 21 6 1.7514 1.4764 4.9621 22 6 2.4048 2.0214 -1.2598 23 1 2.2615 1.3215 -2.0831 24 6 1.5394 3.2645 -1.4887 25 6 2.0053 3.9690 -2.7667 26 6 3.4923 4.3099 -2.6405 27 8 4.2353 3.1133 -2.3989 28 6 3.8765 2.4376 -1.1919 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 1.8686 4.0992 3.2560 35 1 3.5331 3.4629 3.3479 36 1 2.2560 4.7429 5.4615 37 1 3.5597 3.5331 5.6858 38 1 -0.4790 2.5873 6.0061 39 1 -0.3310 0.0988 7.8234 40 1 2.6090 0.8989 5.3073 41 1 0.8560 0.8550 4.9514 42 1 0.4959 2.9679 -1.5944 43 1 1.6432 3.9421 -0.6413 44 1 1.4320 4.8854 -2.9071 45 1 1.8538 3.3101 -3.6217 46 1 3.6376 5.0017 -1.8109 47 1 3.8391 4.7726 -3.5646 48 1 4.0267 3.1050 -0.3433 49 1 4.4997 1.5513 -1.0724 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329714645.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:27 Heat of formation + Delta-G solvation = -165.658034 kcal Electronic energy + Delta-G solvation = -32046.017351 eV Core-core repulsion = 27780.038527 eV Total energy + Delta-G solvation = -4265.978825 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.24714 -40.70231 -39.51709 -38.85878 -37.32013 -35.91903 -34.25226 -34.22581 -32.35251 -31.94930 -30.39386 -29.68207 -27.67321 -26.14679 -25.90795 -24.51946 -24.28464 -22.66191 -21.59325 -21.46424 -20.00102 -19.14542 -18.35555 -18.04633 -17.54813 -17.23988 -17.00205 -16.84870 -16.63638 -16.26749 -16.02869 -15.76766 -15.61584 -14.97099 -14.88821 -14.68655 -14.65953 -14.49221 -14.20906 -13.94498 -13.65065 -13.55185 -13.51793 -13.33103 -13.11642 -12.87622 -12.80962 -12.55771 -12.42101 -12.33692 -12.23541 -12.16420 -12.11569 -11.92840 -11.64119 -11.46696 -11.21353 -10.70622 -10.68259 -10.41611 -10.18886 -9.83507 -9.54562 -8.25982 -6.42629 0.34689 1.19589 1.41784 1.45549 1.55941 2.09555 2.26903 2.39721 2.92201 3.00033 3.11728 3.67025 3.75685 3.76855 3.89626 3.96588 4.04226 4.11830 4.14584 4.19265 4.30782 4.36996 4.42790 4.52128 4.62160 4.63359 4.67222 4.72151 4.76987 4.79506 4.88345 4.96132 5.01258 5.03558 5.05229 5.07233 5.14475 5.23726 5.32185 5.33659 5.42722 5.50173 5.73829 5.94711 6.04589 6.12674 6.33618 6.59101 6.67400 6.94329 7.25966 7.34144 8.79703 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.021034 B = 0.002994 C = 0.002801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.837272 B = 9349.558607 C = 9994.238110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.090 3.910 3 N -0.572 5.572 4 C 0.514 3.486 5 O -0.524 6.524 6 C 0.498 3.502 7 O -0.541 6.541 8 N -0.585 5.585 9 C 0.122 3.878 10 C -0.116 4.116 11 C 0.233 3.767 12 O -0.588 6.588 13 C -0.555 4.555 14 H 0.068 0.932 15 C 0.029 3.971 16 N -0.913 5.913 17 Si 0.964 3.036 18 H -0.265 1.265 19 H -0.281 1.281 20 H -0.281 1.281 21 C 0.110 3.890 22 C 0.119 3.881 23 H 0.124 0.876 24 C -0.142 4.142 25 C -0.141 4.141 26 C 0.051 3.949 27 O -0.388 6.388 28 C 0.050 3.950 29 H 0.079 0.921 30 H 0.025 0.975 31 H 0.064 0.936 32 H 0.110 0.890 33 H 0.094 0.906 34 H 0.068 0.932 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.091 0.909 38 H 0.374 0.626 39 H 0.270 0.730 40 H 0.054 0.946 41 H 0.058 0.942 42 H 0.070 0.930 43 H 0.065 0.935 44 H 0.089 0.911 45 H 0.085 0.915 46 H 0.044 0.956 47 H 0.117 0.883 48 H 0.050 0.950 49 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.439 1.883 -19.959 20.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.031 4.031 3 N -0.306 5.306 4 C 0.297 3.703 5 O -0.401 6.401 6 C 0.282 3.718 7 O -0.421 6.421 8 N -0.317 5.317 9 C 0.000 4.000 10 C -0.153 4.153 11 C 0.193 3.807 12 O -0.395 6.395 13 C -0.593 4.593 14 H 0.087 0.913 15 C -0.172 4.172 16 N -0.552 5.552 17 Si 0.790 3.210 18 H -0.190 1.190 19 H -0.207 1.207 20 H -0.207 1.207 21 C -0.012 4.012 22 C 0.016 3.984 23 H 0.141 0.859 24 C -0.181 4.181 25 C -0.179 4.179 26 C -0.025 4.025 27 O -0.306 6.306 28 C -0.028 4.028 29 H 0.098 0.902 30 H 0.045 0.955 31 H 0.083 0.917 32 H 0.128 0.872 33 H 0.112 0.888 34 H 0.086 0.914 35 H 0.100 0.900 36 H 0.101 0.899 37 H 0.110 0.890 38 H 0.222 0.778 39 H 0.079 0.921 40 H 0.073 0.927 41 H 0.077 0.923 42 H 0.089 0.911 43 H 0.083 0.917 44 H 0.108 0.892 45 H 0.103 0.897 46 H 0.062 0.938 47 H 0.135 0.865 48 H 0.069 0.931 49 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 4.732 2.209 -20.378 21.036 hybrid contribution -0.794 -0.883 1.771 2.132 sum 3.938 1.326 -18.607 19.066 Atomic orbital electron populations 1.22007 0.95411 1.02886 1.00750 1.22271 0.95270 0.80118 1.05417 1.47955 1.62352 1.15255 1.05018 1.19903 0.78933 0.86406 0.85068 1.90661 1.46589 1.15912 1.86930 1.20229 0.80355 0.86245 0.84947 1.90624 1.46210 1.18537 1.86739 1.48766 1.60425 1.16691 1.05826 1.22136 0.99269 0.81557 0.97057 1.22710 0.99487 1.00276 0.92864 1.19858 0.80723 0.88176 0.91977 1.86125 1.17627 1.46099 1.89694 1.21776 1.19276 1.21132 0.97091 0.91337 1.25794 0.94228 0.94778 1.02444 1.69825 1.21952 1.25017 1.38442 0.85406 0.78255 0.77863 0.79501 1.18961 1.20685 1.20655 1.22975 0.99852 0.99048 0.79330 1.22002 0.95188 0.96221 0.84969 0.85860 1.22055 0.99465 0.97052 0.99502 1.22121 0.96502 1.02071 0.97212 1.22817 0.91284 0.86161 1.02232 1.87919 1.61671 1.39494 1.41478 1.22880 0.94412 0.97788 0.87701 0.90242 0.95540 0.91713 0.87214 0.88787 0.91398 0.90035 0.89865 0.89005 0.77753 0.92059 0.92747 0.92321 0.91146 0.91676 0.89202 0.89678 0.93768 0.86505 0.93135 0.88188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.53 9.74 71.98 0.70 -2.83 16 2 C 0.09 2.04 5.71 86.38 0.49 2.54 16 3 N -0.57 -14.39 2.45 -798.87 -1.95 -16.35 16 4 C 0.51 16.76 7.04 87.27 0.61 17.37 16 5 O -0.52 -17.79 10.36 -3.24 -0.03 -17.83 16 6 C 0.50 19.54 7.70 87.27 0.67 20.21 16 7 O -0.54 -22.44 12.11 -3.23 -0.04 -22.48 16 8 N -0.58 -24.48 3.34 -812.78 -2.71 -27.19 16 9 C 0.12 4.57 5.52 86.68 0.48 5.05 16 10 C -0.12 -4.60 6.13 31.78 0.19 -4.41 16 11 C 0.23 11.26 0.87 -10.16 -0.01 11.25 16 12 O -0.59 -30.27 13.16 -148.98 -1.96 -32.23 16 13 C -0.55 -28.51 8.27 25.60 0.21 -28.30 16 14 H 0.07 3.44 7.79 -2.91 -0.02 3.41 16 15 C 0.03 1.48 5.29 84.65 0.45 1.92 16 16 N -0.91 -48.48 10.69 21.45 0.23 -48.25 16 17 Si 0.96 41.09 29.54 68.60 2.03 43.12 16 18 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 19 H -0.28 -11.88 7.11 99.48 0.71 -11.18 16 20 H -0.28 -11.83 7.11 99.48 0.71 -11.13 16 21 C 0.11 5.27 5.38 86.84 0.47 5.74 16 22 C 0.12 2.40 2.75 45.08 0.12 2.52 16 23 H 0.12 1.89 7.71 -2.39 -0.02 1.87 16 24 C -0.14 -2.90 5.28 30.72 0.16 -2.73 16 25 C -0.14 -2.08 6.13 30.69 0.19 -1.89 16 26 C 0.05 0.85 6.84 72.01 0.49 1.35 16 27 O -0.39 -8.20 10.77 -148.98 -1.60 -9.81 16 28 C 0.05 1.10 6.09 72.01 0.44 1.53 16 29 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.03 0.80 7.04 -2.39 -0.02 0.78 16 31 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.11 1.65 7.78 -2.39 -0.02 1.63 16 33 H 0.09 2.66 5.38 -2.41 -0.01 2.65 16 34 H 0.07 2.60 7.47 -2.39 -0.02 2.58 16 35 H 0.08 2.73 7.83 -2.39 -0.02 2.72 16 36 H 0.08 3.17 8.14 -2.39 -0.02 3.15 16 37 H 0.09 3.37 8.03 -2.39 -0.02 3.35 16 38 H 0.37 19.91 7.56 -74.06 -0.56 19.34 16 39 H 0.27 13.71 8.31 -92.70 -0.77 12.94 16 40 H 0.05 2.68 8.03 -2.39 -0.02 2.66 16 41 H 0.06 3.16 7.32 -2.39 -0.02 3.14 16 42 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 43 H 0.06 1.72 5.96 -2.39 -0.01 1.71 16 44 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 45 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 46 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 47 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 48 H 0.05 1.36 6.24 -2.39 -0.01 1.34 16 49 H 0.10 2.01 8.14 -2.38 -0.02 1.99 16 Total: -1.00 -60.58 378.19 0.03 -60.55 By element: Atomic # 1 Polarization: 40.76 SS G_CDS: 0.40 Total: 41.16 kcal Atomic # 6 Polarization: 23.63 SS G_CDS: 5.68 Total: 29.31 kcal Atomic # 7 Polarization: -87.36 SS G_CDS: -4.44 Total: -91.79 kcal Atomic # 8 Polarization: -78.70 SS G_CDS: -3.64 Total: -82.34 kcal Atomic # 14 Polarization: 41.09 SS G_CDS: 2.03 Total: 43.12 kcal Total: -60.58 0.03 -60.55 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329714645.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.110 kcal (2) G-P(sol) polarization free energy of solvation -60.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds