Wall clock time and date at job start Tue Mar 31 2020 23:53:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.42898 * 113.99891 * 2 1 4 4 C 1.53008 * 110.45931 * 302.18011 * 3 2 1 5 5 N 1.46503 * 109.46877 * 302.11935 * 4 3 2 6 6 C 1.34776 * 119.99663 * 175.01778 * 5 4 3 7 7 O 1.21348 * 120.00287 * 359.97438 * 6 5 4 8 8 C 1.49452 * 119.99851 * 179.97438 * 6 5 4 9 9 O 1.21349 * 120.00001 * 6.71574 * 8 6 5 10 10 N 1.34774 * 119.99891 * 186.71272 * 8 6 5 11 11 C 1.46925 * 120.63257 * 6.20829 * 10 8 6 12 12 C 1.52763 * 109.00951 * 233.58514 * 11 10 8 13 13 C 1.53035 * 109.38249 * 305.58379 * 12 11 10 14 14 C 1.50697 * 109.46049 * 181.25966 * 13 12 11 15 15 H 1.07993 * 120.00349 * 274.81239 * 14 13 12 16 16 C 1.37883 * 120.00042 * 94.81471 * 14 13 12 17 17 N 1.31512 * 120.00300 * 184.78229 * 16 14 13 18 18 Si 1.86804 * 119.99763 * 4.78134 * 16 14 13 19 19 H 1.48494 * 109.47154 * 94.73906 * 18 16 14 20 20 H 1.48501 * 109.47052 * 214.74365 * 18 16 14 21 21 H 1.48504 * 109.46914 * 334.74118 * 18 16 14 22 22 C 1.53047 * 109.53846 * 61.24190 * 13 12 11 23 23 C 1.46928 * 120.63124 * 186.48609 * 10 8 6 24 24 C 1.54509 * 110.51327 * 64.78740 * 3 2 1 25 25 C 1.54481 * 104.06135 * 118.64503 * 24 3 2 26 26 O 1.44425 * 104.80637 * 23.97625 * 25 24 3 27 27 C 1.44427 * 105.27547 * 319.49207 * 26 25 24 28 28 H 1.09000 * 109.47085 * 55.18956 * 1 2 3 29 29 H 1.08995 * 109.46778 * 295.19839 * 1 2 3 30 30 H 1.08993 * 109.46884 * 175.19395 * 1 2 3 31 31 H 1.09000 * 109.46545 * 62.11976 * 4 3 2 32 32 H 1.09000 * 109.46885 * 182.11915 * 4 3 2 33 33 H 0.96998 * 120.00234 * 355.02095 * 5 4 3 34 34 H 1.08999 * 109.58749 * 353.41741 * 11 10 8 35 35 H 1.08998 * 109.59107 * 113.83983 * 11 10 8 36 36 H 1.09001 * 109.56146 * 185.55354 * 12 11 10 37 37 H 1.09002 * 109.38691 * 65.51296 * 12 11 10 38 38 H 1.09006 * 109.46608 * 301.22428 * 13 12 11 39 39 H 0.96992 * 119.99991 * 179.97438 * 17 16 14 40 40 H 1.08995 * 109.49786 * 178.68414 * 22 13 12 41 41 H 1.08999 * 109.52206 * 58.59529 * 22 13 12 42 42 H 1.08996 * 109.58617 * 246.15544 * 23 10 8 43 43 H 1.09005 * 109.58470 * 6.58552 * 23 10 8 44 44 H 1.08994 * 110.51063 * 237.28595 * 24 3 2 45 45 H 1.09001 * 110.51002 * 359.97438 * 24 3 2 46 46 H 1.08994 * 110.37066 * 142.81340 * 25 24 3 47 47 H 1.09001 * 110.36590 * 265.14607 * 25 24 3 48 48 H 1.09001 * 110.36857 * 281.67976 * 27 26 25 49 49 H 1.09000 * 110.37353 * 159.34027 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.5303 2.1046 -1.2133 5 7 1.8769 1.3839 -2.4409 6 6 1.4632 1.8503 -3.6357 7 8 0.8033 2.8670 -3.6948 8 6 1.8173 1.1155 -4.8880 9 8 2.3707 0.0375 -4.8231 10 7 1.5219 1.6501 -6.0894 11 6 0.9766 3.0107 -6.1897 12 6 -0.3166 2.9699 -7.0019 13 6 -0.0481 2.2991 -8.3510 14 6 -1.3155 2.2856 -9.1661 15 1 -2.0342 1.4905 -9.0339 16 6 -1.5576 3.2886 -10.0808 17 7 -2.7040 3.3294 -10.7239 18 14 -0.2571 4.5895 -10.4064 19 1 0.5575 4.1916 -11.5824 20 1 -0.9170 5.8917 -10.6789 21 1 0.6218 4.7195 -9.2165 22 6 0.4265 0.8621 -8.1226 23 6 1.7333 0.8811 -7.3234 24 6 1.6673 2.0508 1.3093 25 6 3.0426 2.3190 1.9597 26 8 3.9804 2.3000 0.8615 27 6 3.5522 1.2114 0.0143 28 1 -0.3633 0.5867 -0.8438 29 1 -0.3633 0.4375 0.9298 30 1 -0.3633 -1.0240 -0.0861 31 1 0.4491 2.2320 -1.1597 32 1 2.0117 3.0825 -1.2178 33 1 2.4041 0.5710 -2.3936 34 1 0.7674 3.3951 -5.1914 35 1 1.6980 3.6577 -6.6888 36 1 -0.6767 3.9856 -7.1660 37 1 -1.0690 2.4008 -6.4559 38 1 0.7219 2.8549 -8.8862 39 1 -2.8744 4.0351 -11.3671 40 1 0.5951 0.3775 -9.0842 41 1 -0.3323 0.3120 -7.5660 42 1 2.5177 1.3508 -7.9168 43 1 2.0232 -0.1394 -7.0728 44 1 1.1581 2.9896 1.0921 45 1 1.0541 1.4237 1.9563 46 1 3.0483 3.2940 2.4468 47 1 3.2824 1.5341 2.6771 48 1 3.8702 0.2568 0.4334 49 1 3.9493 1.3358 -0.9931 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329846733.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:53:37 Heat of formation + Delta-G solvation = -135.526965 kcal Electronic energy + Delta-G solvation = -30950.260539 eV Core-core repulsion = 26685.588295 eV Total energy + Delta-G solvation = -4264.672243 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.18109 -40.44928 -38.60934 -37.69041 -37.22217 -35.06061 -33.39642 -31.97763 -31.50367 -30.49601 -29.98441 -27.88471 -26.88232 -26.17670 -24.37885 -23.18523 -22.57614 -21.89037 -20.91073 -20.35579 -19.05250 -17.92863 -17.60346 -16.96324 -16.90606 -16.62739 -16.15626 -16.00583 -15.70753 -15.49341 -15.26896 -14.82779 -14.48294 -14.39556 -14.25043 -13.77346 -13.56764 -13.33893 -13.12203 -13.08196 -12.84161 -12.69243 -12.50863 -12.18905 -12.09702 -11.98817 -11.82089 -11.80659 -11.15981 -11.08245 -10.97767 -10.76963 -10.47392 -10.31522 -10.19740 -10.02668 -9.68910 -9.53965 -9.48474 -9.17042 -8.75965 -8.48829 -8.27820 -6.08058 -4.06871 1.44061 2.27580 3.03617 3.25085 3.27102 3.36869 3.37874 3.41084 3.59360 3.86868 4.00152 4.20135 4.35823 4.41310 4.55580 4.58659 4.86417 4.87593 5.01032 5.10178 5.13298 5.20427 5.21940 5.23552 5.30681 5.34484 5.40228 5.47509 5.64496 5.72045 5.84123 5.88591 5.97171 6.09719 6.22096 6.33054 6.50001 6.62144 6.64833 6.72016 6.82408 6.87822 6.98227 7.31131 7.44985 7.54870 7.74443 7.79177 8.07170 8.52440 8.97362 9.55228 11.05400 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.022049 B = 0.002424 C = 0.002401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.602462 B =11548.942736 C =11658.385156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.366 6.366 3 C 0.071 3.929 4 C 0.099 3.901 5 N -0.698 5.698 6 C 0.512 3.488 7 O -0.502 6.502 8 C 0.502 3.498 9 O -0.537 6.537 10 N -0.562 5.562 11 C 0.041 3.959 12 C -0.118 4.118 13 C 0.009 3.991 14 C -0.510 4.510 15 H 0.071 0.929 16 C 0.069 3.931 17 N -0.902 5.902 18 Si 0.875 3.125 19 H -0.279 1.279 20 H -0.289 1.289 21 H -0.260 1.260 22 C -0.117 4.117 23 C 0.103 3.897 24 C -0.178 4.178 25 C 0.047 3.953 26 O -0.364 6.364 27 C 0.058 3.942 28 H 0.050 0.950 29 H 0.046 0.954 30 H 0.092 0.908 31 H 0.083 0.917 32 H 0.089 0.911 33 H 0.416 0.584 34 H 0.145 0.855 35 H 0.057 0.943 36 H 0.065 0.935 37 H 0.055 0.945 38 H 0.035 0.965 39 H 0.263 0.737 40 H 0.071 0.929 41 H 0.056 0.944 42 H 0.067 0.933 43 H 0.084 0.916 44 H 0.088 0.912 45 H 0.093 0.907 46 H 0.097 0.903 47 H 0.065 0.935 48 H 0.079 0.921 49 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.013 -3.245 25.800 28.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.285 6.285 3 C 0.031 3.969 4 C -0.025 4.025 5 N -0.353 5.353 6 C 0.294 3.706 7 O -0.378 6.378 8 C 0.284 3.716 9 O -0.416 6.416 10 N -0.293 5.293 11 C -0.079 4.079 12 C -0.156 4.156 13 C -0.010 4.010 14 C -0.547 4.547 15 H 0.089 0.911 16 C -0.132 4.132 17 N -0.539 5.539 18 Si 0.703 3.297 19 H -0.205 1.205 20 H -0.215 1.215 21 H -0.185 1.185 22 C -0.155 4.155 23 C -0.018 4.018 24 C -0.216 4.216 25 C -0.030 4.030 26 O -0.283 6.283 27 C -0.019 4.019 28 H 0.069 0.931 29 H 0.064 0.936 30 H 0.110 0.890 31 H 0.102 0.898 32 H 0.107 0.893 33 H 0.253 0.747 34 H 0.161 0.839 35 H 0.075 0.925 36 H 0.083 0.917 37 H 0.074 0.926 38 H 0.053 0.947 39 H 0.073 0.927 40 H 0.090 0.910 41 H 0.075 0.925 42 H 0.086 0.914 43 H 0.102 0.898 44 H 0.107 0.893 45 H 0.111 0.889 46 H 0.115 0.885 47 H 0.083 0.917 48 H 0.097 0.903 49 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 11.005 -2.990 25.593 28.019 hybrid contribution 0.191 0.507 -0.388 0.666 sum 11.196 -2.483 25.205 27.692 Atomic orbital electron populations 1.22897 0.80294 1.03551 1.00588 1.87983 1.20500 1.25214 1.94808 1.23176 0.95452 0.84464 0.93836 1.22021 1.02033 0.96087 0.82367 1.45664 1.55128 1.29655 1.04814 1.20449 0.80111 0.84866 0.85133 1.90378 1.38241 1.24352 1.84861 1.19773 0.81031 0.86045 0.84739 1.90720 1.42263 1.21802 1.86820 1.48108 1.59384 1.16882 1.04928 1.23354 0.96824 0.80570 1.07156 1.22040 0.94537 1.01575 0.97486 1.19252 0.97182 0.91464 0.93137 1.20980 1.03486 1.10505 1.19772 0.91065 1.25084 0.95154 0.97334 0.95645 1.69915 1.22893 1.33902 1.27239 0.86863 0.82409 0.81444 0.78996 1.20475 1.21527 1.18484 1.21970 0.94272 1.00510 0.98735 1.21994 0.99459 0.96338 0.84025 1.23521 0.99533 1.02085 0.96472 1.23397 0.86743 1.02821 0.90027 1.89219 1.51276 1.51754 1.36037 1.23349 0.89860 0.91881 0.96843 0.93149 0.93574 0.88967 0.89842 0.89270 0.74707 0.83864 0.92492 0.91689 0.92591 0.94729 0.92728 0.91011 0.92501 0.91446 0.89753 0.89323 0.88885 0.88472 0.91654 0.90251 0.87812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 10.36 101.05 1.05 1.20 16 2 O -0.37 -3.01 10.12 -35.23 -0.36 -3.37 16 3 C 0.07 0.52 0.71 -89.05 -0.06 0.46 16 4 C 0.10 0.86 3.92 -4.04 -0.02 0.85 16 5 N -0.70 -7.55 4.99 -60.72 -0.30 -7.85 16 6 C 0.51 7.25 7.78 -11.58 -0.09 7.16 16 7 O -0.50 -7.93 13.09 5.50 0.07 -7.86 16 8 C 0.50 8.17 7.75 -11.59 -0.09 8.08 16 9 O -0.54 -9.29 15.94 5.50 0.09 -9.20 16 10 N -0.56 -9.71 2.98 -173.53 -0.52 -10.23 16 11 C 0.04 0.74 6.25 -3.93 -0.02 0.71 16 12 C -0.12 -2.46 5.33 -26.83 -0.14 -2.60 16 13 C 0.01 0.20 1.70 -91.73 -0.16 0.04 16 14 C -0.51 -13.98 8.86 -34.44 -0.31 -14.29 16 15 H 0.07 2.15 8.06 -52.49 -0.42 1.72 16 16 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 17 N -0.90 -27.34 13.96 55.43 0.77 -26.56 16 18 Si 0.88 21.13 27.30 -169.99 -4.64 16.49 16 19 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 20 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 21 H -0.26 -5.92 6.38 56.52 0.36 -5.56 16 22 C -0.12 -2.30 5.34 -26.61 -0.14 -2.44 16 23 C 0.10 1.77 6.42 -3.71 -0.02 1.74 16 24 C -0.18 -0.97 6.01 -25.16 -0.15 -1.12 16 25 C 0.05 0.27 7.63 37.93 0.29 0.56 16 26 O -0.36 -3.14 11.65 -35.23 -0.41 -3.55 16 27 C 0.06 0.44 6.69 37.94 0.25 0.69 16 28 H 0.05 0.39 6.26 -51.93 -0.33 0.06 16 29 H 0.05 0.24 6.85 -51.93 -0.36 -0.12 16 30 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.08 0.74 6.61 -51.93 -0.34 0.40 16 32 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.42 4.27 7.32 -40.82 -0.30 3.97 16 34 H 0.15 2.50 3.76 -56.84 -0.21 2.28 16 35 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 36 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 37 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.03 0.79 5.08 -51.93 -0.26 0.53 16 39 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 40 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 41 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 42 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 43 H 0.08 1.38 7.05 -51.93 -0.37 1.02 16 44 H 0.09 0.43 7.73 -51.93 -0.40 0.03 16 45 H 0.09 0.43 6.84 -51.93 -0.36 0.07 16 46 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 48 H 0.08 0.56 8.08 -51.93 -0.42 0.14 16 49 H 0.10 0.79 7.16 -51.93 -0.37 0.42 16 LS Contribution 381.34 15.07 5.75 5.75 Total: -1.00 -32.35 381.34 -6.80 -39.15 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: -7.54 Total: 4.32 kcal Atomic # 6 Polarization: 2.63 SS G_CDS: 0.29 Total: 2.92 kcal Atomic # 7 Polarization: -44.60 SS G_CDS: -0.05 Total: -44.65 kcal Atomic # 8 Polarization: -23.37 SS G_CDS: -0.61 Total: -23.97 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -4.64 Total: 16.49 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.35 -6.80 -39.15 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329846733.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.379 kcal (2) G-P(sol) polarization free energy of solvation -32.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds