Wall clock time and date at job start Tue Mar 31 2020 23:44:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46510 * 1 3 3 C 1.46496 * 119.99597 * 2 1 4 4 C 1.53004 * 109.46743 * 269.99299 * 3 2 1 5 5 H 1.08998 * 109.52593 * 305.13555 * 4 3 2 6 6 C 1.53143 * 109.52118 * 185.00325 * 4 3 2 7 7 O 1.43081 * 109.15279 * 184.78601 * 6 4 3 8 8 C 1.43079 * 113.58681 * 57.95176 * 7 6 4 9 9 C 1.53143 * 109.15364 * 302.04777 * 8 7 6 10 10 O 1.43072 * 109.52580 * 65.33149 * 4 3 2 11 11 C 1.34774 * 119.99823 * 179.97438 * 2 1 3 12 12 O 1.21354 * 119.99773 * 179.09527 * 11 2 1 13 13 C 1.49452 * 120.00319 * 359.10290 * 11 2 1 14 14 O 1.21352 * 119.99960 * 353.89671 * 13 11 2 15 15 N 1.34773 * 120.00204 * 173.89958 * 13 11 2 16 16 C 1.46925 * 120.63306 * 170.65963 * 15 13 11 17 17 C 1.53195 * 108.89258 * 126.46532 * 16 15 13 18 18 C 1.53038 * 109.31207 * 54.56641 * 17 16 15 19 19 C 1.50703 * 109.46149 * 178.61583 * 18 17 16 20 20 H 1.07998 * 119.99611 * 359.97438 * 19 18 17 21 21 C 1.37875 * 119.99768 * 180.02562 * 19 18 17 22 22 N 1.31512 * 120.00313 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 119.99687 * 179.97438 * 21 19 18 24 24 H 1.48494 * 109.47190 * 89.99762 * 23 21 19 25 25 H 1.48496 * 109.47260 * 210.00176 * 23 21 19 26 26 H 1.48511 * 109.46972 * 329.99734 * 23 21 19 27 27 C 1.53044 * 109.53740 * 298.63465 * 18 17 16 28 28 C 1.46967 * 120.65403 * 350.48205 * 15 13 11 29 29 H 1.08996 * 109.47158 * 265.31997 * 1 2 3 30 30 H 1.09004 * 109.46560 * 25.32463 * 1 2 3 31 31 H 1.09001 * 109.46611 * 145.31945 * 1 2 3 32 32 H 1.08997 * 109.47801 * 29.99293 * 3 2 1 33 33 H 1.09005 * 109.46842 * 150.00332 * 3 2 1 34 34 H 1.08999 * 109.52471 * 304.68908 * 6 4 3 35 35 H 1.09004 * 109.52926 * 64.82428 * 6 4 3 36 36 H 1.08992 * 109.52338 * 61.95334 * 8 7 6 37 37 H 1.09005 * 109.52013 * 182.08200 * 8 7 6 38 38 H 1.08994 * 109.52614 * 175.21489 * 9 8 7 39 39 H 1.08999 * 109.52471 * 295.41363 * 9 8 7 40 40 H 1.08999 * 109.58307 * 6.61337 * 16 15 13 41 41 H 1.08992 * 109.59055 * 246.32856 * 16 15 13 42 42 H 1.09003 * 109.49829 * 174.51837 * 17 16 15 43 43 H 1.09005 * 109.49662 * 294.58225 * 17 16 15 44 44 H 1.08998 * 109.46270 * 58.63960 * 18 17 16 45 45 H 0.96999 * 119.99587 * 179.97438 * 22 21 19 46 46 H 1.09000 * 109.49407 * 181.31345 * 27 18 17 47 47 H 1.08995 * 109.49897 * 301.37849 * 27 18 17 48 48 H 1.09004 * 109.46264 * 113.74769 * 28 15 13 49 49 H 1.09002 * 109.71084 * 353.46391 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4526 1.7103 -1.4426 5 1 2.9622 0.9126 -1.9830 6 6 3.3246 2.9692 -1.4458 7 8 3.4656 3.4391 -2.7899 8 6 2.2187 3.7301 -3.4284 9 6 1.3466 2.4712 -3.4251 10 8 1.2058 2.0013 -2.0811 11 6 2.1389 -1.1672 0.0005 12 8 3.3524 -1.1673 -0.0161 13 6 1.3918 -2.4614 0.0214 14 8 0.1851 -2.4634 0.1495 15 7 2.0583 -3.6263 -0.1021 16 6 1.3739 -4.9075 0.1192 17 6 1.5910 -5.8036 -1.1041 18 6 3.0912 -5.9317 -1.3779 19 6 3.3101 -6.8402 -2.5603 20 1 2.4640 -7.2821 -3.0655 21 6 4.5904 -7.1078 -2.9962 22 7 5.6206 -6.5700 -2.3807 23 14 4.8617 -8.2344 -4.4614 24 1 4.8713 -7.4298 -5.7094 25 1 6.1630 -8.9342 -4.3135 26 1 3.7662 -9.2350 -4.5260 27 6 3.6759 -4.5503 -1.6812 28 6 3.4825 -3.6400 -0.4644 29 1 -0.3633 -0.0838 1.0242 30 1 -0.3632 0.9290 -0.4396 31 1 -0.3632 -0.8451 -0.5848 32 1 1.6084 2.0284 0.5137 33 1 3.1500 1.1384 0.5138 34 1 2.8526 3.7409 -0.8377 35 1 4.3070 2.7330 -1.0367 36 1 1.7096 4.5274 -2.8870 37 1 2.4005 4.0458 -4.4557 38 1 0.3640 2.7077 -3.8332 39 1 1.8186 1.6995 -4.0332 40 1 0.3072 -4.7324 0.2592 41 1 1.7839 -5.3926 1.0049 42 1 1.1707 -6.7907 -0.9112 43 1 1.0989 -5.3618 -1.9707 44 1 3.5858 -6.3507 -0.5016 45 1 6.5213 -6.7586 -2.6873 46 1 4.7397 -4.6454 -1.8989 47 1 3.1653 -4.1203 -2.5428 48 1 4.0668 -4.0207 0.3734 49 1 3.8095 -2.6293 -0.7086 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330387951.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:44:41 Heat of formation + Delta-G solvation = -151.714013 kcal Electronic energy + Delta-G solvation = -31331.123428 eV Core-core repulsion = 27065.749261 eV Total energy + Delta-G solvation = -4265.374166 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.17287 -40.97282 -39.83887 -38.69251 -37.39262 -36.62122 -35.26597 -33.26373 -33.03157 -31.77753 -29.95345 -28.59026 -27.87877 -27.40830 -25.60850 -24.51708 -24.08521 -23.00962 -22.16464 -21.23436 -20.15185 -18.54235 -18.39359 -18.09017 -17.87309 -17.59300 -17.17056 -17.10534 -16.86466 -16.49322 -16.23943 -16.21744 -15.61794 -15.39340 -15.02677 -14.82182 -14.64329 -14.51383 -14.42593 -14.08983 -13.93564 -13.57306 -13.39324 -13.34741 -13.14789 -13.01494 -12.93338 -12.82121 -12.50204 -12.45622 -12.16188 -12.09960 -11.94909 -11.73126 -11.49342 -11.40769 -11.02257 -10.91017 -10.46212 -10.27579 -10.12165 -9.82706 -9.61096 -8.08220 -6.22319 0.29002 1.22829 1.40757 1.42106 1.51609 2.04433 2.32578 2.43326 2.57707 2.76747 3.09809 3.18176 3.54376 3.80868 3.88989 4.01195 4.08891 4.12716 4.22414 4.27001 4.29022 4.33729 4.39054 4.48184 4.51584 4.54890 4.57977 4.67170 4.74852 4.76120 4.82677 4.86753 4.88641 4.97149 5.05944 5.16479 5.18033 5.31536 5.39998 5.47969 5.62242 5.84296 5.95529 5.97990 6.00817 6.08890 6.23730 6.37014 6.58278 6.87485 6.89413 7.45557 8.95361 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.012750 B = 0.002969 C = 0.002626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2195.470531 B = 9427.694269 C =10660.055246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.573 5.573 3 C 0.122 3.878 4 C 0.040 3.960 5 H 0.041 0.959 6 C 0.036 3.964 7 O -0.402 6.402 8 C 0.023 3.977 9 C 0.020 3.980 10 O -0.382 6.382 11 C 0.503 3.497 12 O -0.530 6.530 13 C 0.499 3.501 14 O -0.537 6.537 15 N -0.572 5.572 16 C 0.113 3.887 17 C -0.113 4.113 18 C 0.044 3.956 19 C -0.534 4.534 20 H 0.051 0.949 21 C 0.014 3.986 22 N -0.913 5.913 23 Si 0.951 3.049 24 H -0.279 1.279 25 H -0.283 1.283 26 H -0.269 1.269 27 C -0.112 4.112 28 C 0.086 3.914 29 H 0.068 0.932 30 H 0.092 0.908 31 H 0.078 0.922 32 H 0.125 0.875 33 H 0.109 0.891 34 H 0.086 0.914 35 H 0.114 0.886 36 H 0.076 0.924 37 H 0.119 0.881 38 H 0.128 0.872 39 H 0.043 0.957 40 H 0.095 0.905 41 H 0.079 0.921 42 H 0.072 0.928 43 H 0.043 0.957 44 H 0.004 0.996 45 H 0.261 0.739 46 H 0.076 0.924 47 H 0.021 0.979 48 H 0.060 0.940 49 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.370 22.365 4.260 24.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.305 5.305 3 C 0.000 4.000 4 C -0.019 4.019 5 H 0.059 0.941 6 C -0.041 4.041 7 O -0.321 6.321 8 C -0.054 4.054 9 C -0.057 4.057 10 O -0.301 6.301 11 C 0.286 3.714 12 O -0.408 6.408 13 C 0.282 3.718 14 O -0.416 6.416 15 N -0.304 5.304 16 C -0.008 4.008 17 C -0.151 4.151 18 C 0.025 3.975 19 C -0.573 4.573 20 H 0.069 0.931 21 C -0.185 4.185 22 N -0.553 5.553 23 Si 0.777 3.223 24 H -0.205 1.205 25 H -0.208 1.208 26 H -0.194 1.194 27 C -0.151 4.151 28 C -0.035 4.035 29 H 0.087 0.913 30 H 0.111 0.889 31 H 0.096 0.904 32 H 0.143 0.857 33 H 0.127 0.873 34 H 0.104 0.896 35 H 0.132 0.868 36 H 0.095 0.905 37 H 0.137 0.863 38 H 0.146 0.854 39 H 0.062 0.938 40 H 0.114 0.886 41 H 0.097 0.903 42 H 0.091 0.909 43 H 0.062 0.938 44 H 0.022 0.978 45 H 0.070 0.930 46 H 0.095 0.905 47 H 0.040 0.960 48 H 0.078 0.922 49 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -9.196 22.361 4.329 24.563 hybrid contribution 0.547 -1.123 -1.098 1.663 sum -8.649 21.238 3.232 23.158 Atomic orbital electron populations 1.22291 0.76193 1.04492 1.03218 1.47729 1.09199 1.04462 1.69091 1.21785 0.99791 0.84278 0.94110 1.23170 0.86328 0.97231 0.95155 0.94070 1.23240 1.01915 0.94704 0.84217 1.88097 1.30342 1.85869 1.27763 1.23422 0.84958 0.96681 1.00314 1.23403 1.02939 0.95846 0.83488 1.88042 1.28507 1.86150 1.27431 1.20207 0.87272 0.85788 0.78119 1.90533 1.14122 1.86301 1.49884 1.20165 0.87275 0.85492 0.78826 1.90635 1.13511 1.86881 1.50621 1.48201 1.12333 1.05520 1.64373 1.21831 0.98306 0.82199 0.98473 1.21849 0.98273 0.98679 0.96282 1.18638 0.91074 0.92575 0.95188 1.21552 0.92218 1.28395 1.15091 0.93120 1.25702 0.96052 0.97395 0.99307 1.69975 0.98612 1.44894 1.41814 0.85659 0.77503 0.79212 0.79882 1.20473 1.20840 1.19356 1.21796 1.02869 0.95811 0.94625 1.22737 0.78810 1.04262 0.97702 0.91314 0.88924 0.90360 0.85674 0.87328 0.89565 0.86756 0.90531 0.86279 0.85389 0.93825 0.88626 0.90328 0.90931 0.93815 0.97764 0.92975 0.90547 0.96008 0.92209 0.85837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.66 9.20 127.77 1.18 2.84 16 2 N -0.57 -13.72 2.84 -848.31 -2.41 -16.13 16 3 C 0.12 2.15 5.07 86.38 0.44 2.59 16 4 C 0.04 0.80 3.09 30.64 0.09 0.89 16 5 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 6 C 0.04 0.58 6.34 72.03 0.46 1.03 16 7 O -0.40 -7.88 10.85 -136.01 -1.48 -9.36 16 8 C 0.02 0.31 7.05 72.03 0.51 0.82 16 9 C 0.02 0.31 7.05 72.03 0.51 0.82 16 10 O -0.38 -7.46 9.42 -136.01 -1.28 -8.74 16 11 C 0.50 15.74 7.59 87.27 0.66 16.40 16 12 O -0.53 -18.37 12.78 -3.26 -0.04 -18.41 16 13 C 0.50 17.33 7.58 87.27 0.66 17.99 16 14 O -0.54 -18.63 12.68 -3.25 -0.04 -18.67 16 15 N -0.57 -21.40 2.98 -820.39 -2.44 -23.85 16 16 C 0.11 4.02 6.44 86.36 0.56 4.58 16 17 C -0.11 -4.64 5.30 30.67 0.16 -4.48 16 18 C 0.04 2.18 2.06 -11.51 -0.02 2.16 16 19 C -0.53 -29.46 8.56 25.60 0.22 -29.24 16 20 H 0.05 2.76 7.74 -2.91 -0.02 2.74 16 21 C 0.01 0.79 5.30 84.65 0.45 1.24 16 22 N -0.91 -52.41 11.31 21.45 0.24 -52.16 16 23 Si 0.95 43.77 29.54 68.60 2.03 45.80 16 24 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 25 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 26 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 27 C -0.11 -5.43 5.16 30.67 0.16 -5.27 16 28 C 0.09 3.52 5.96 86.35 0.51 4.03 16 29 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.09 1.56 7.22 -2.39 -0.02 1.54 16 31 H 0.08 2.05 5.58 -2.39 -0.01 2.04 16 32 H 0.13 1.40 8.07 -2.39 -0.02 1.38 16 33 H 0.11 1.89 7.43 -2.38 -0.02 1.87 16 34 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.12 1.21 8.14 -2.38 -0.02 1.19 16 38 H 0.13 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.10 3.13 7.01 -2.39 -0.02 3.12 16 41 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 42 H 0.07 2.81 8.14 -2.39 -0.02 2.79 16 43 H 0.04 1.86 8.14 -2.38 -0.02 1.84 16 44 H 0.00 0.23 8.14 -2.39 -0.02 0.21 16 45 H 0.26 14.29 8.31 -92.71 -0.77 13.52 16 46 H 0.08 4.15 6.03 -2.39 -0.01 4.14 16 47 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 48 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 49 H 0.12 5.02 4.37 -43.66 -0.19 4.83 16 Total: -1.00 -67.16 381.20 1.88 -65.28 By element: Atomic # 1 Polarization: 19.09 SS G_CDS: 0.77 Total: 19.86 kcal Atomic # 6 Polarization: 9.84 SS G_CDS: 6.54 Total: 16.38 kcal Atomic # 7 Polarization: -87.53 SS G_CDS: -4.61 Total: -92.14 kcal Atomic # 8 Polarization: -52.33 SS G_CDS: -2.84 Total: -55.17 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Total: -67.16 1.88 -65.28 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330387951.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.436 kcal (2) G-P(sol) polarization free energy of solvation -67.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds