Wall clock time and date at job start Tue Mar 31 2020 23:43:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17410 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46505 * 109.46984 * 120.60538 * 3 2 1 5 5 C 1.36932 * 119.99780 * 266.65976 * 4 3 2 6 6 H 1.07998 * 119.99747 * 139.07445 * 5 4 3 7 7 C 1.38806 * 119.99987 * 319.08350 * 5 4 3 8 8 N 1.31562 * 119.99701 * 164.18527 * 7 5 4 9 9 Si 1.86799 * 119.99796 * 344.17923 * 7 5 4 10 10 H 1.48495 * 109.47321 * 95.12750 * 9 7 5 11 11 H 1.48503 * 109.47007 * 215.12447 * 9 7 5 12 12 H 1.48502 * 109.47410 * 335.12503 * 9 7 5 13 13 C 1.38221 * 120.00293 * 86.66008 * 4 3 2 14 14 N 1.31567 * 126.45431 * 353.67565 * 13 4 3 15 15 N 1.28424 * 110.49609 * 179.81810 * 14 13 4 16 16 N 1.28905 * 110.34892 * 0.45599 * 15 14 13 17 17 N 1.35436 * 126.46020 * 173.98616 * 13 4 3 18 18 C 1.46495 * 127.38489 * 0.02562 * 17 13 4 19 19 C 1.52997 * 109.47535 * 90.41052 * 18 17 13 20 20 C 1.52999 * 109.47342 * 179.97438 * 19 18 17 21 21 N 1.46504 * 109.46925 * 180.02562 * 20 19 18 22 22 C 1.46497 * 119.99953 * 270.00296 * 21 20 19 23 23 C 1.39672 * 119.99828 * 90.00320 * 21 20 19 24 24 C 1.38905 * 120.07608 * 359.72512 * 23 21 20 25 25 C 1.38112 * 119.92657 * 179.76785 * 24 23 21 26 26 C 1.38286 * 120.07019 * 0.50362 * 25 24 23 27 27 C 1.38284 * 120.15173 * 359.75297 * 26 25 24 28 28 C 1.38105 * 120.07414 * 359.97438 * 27 26 25 29 29 H 4.40641 * 5.51352 * 179.97438 * 4 1 2 30 30 H 1.09001 * 109.46885 * 240.60162 * 3 2 1 31 31 H 1.09000 * 109.47372 * 0.60147 * 3 2 1 32 32 H 0.97001 * 119.99409 * 179.97438 * 8 7 5 33 33 H 1.09000 * 109.47033 * 210.41301 * 18 17 13 34 34 H 1.09006 * 109.47495 * 330.41121 * 18 17 13 35 35 H 1.09000 * 109.47163 * 300.00169 * 19 18 17 36 36 H 1.09008 * 109.46476 * 60.00071 * 19 18 17 37 37 H 1.09000 * 109.47493 * 300.00413 * 20 19 18 38 38 H 1.08998 * 109.46942 * 60.00938 * 20 19 18 39 39 H 1.09004 * 109.47366 * 90.00206 * 22 21 20 40 40 H 1.09004 * 109.46935 * 210.00241 * 22 21 20 41 41 H 1.09006 * 109.47009 * 330.00017 * 22 21 20 42 42 H 1.08007 * 120.03919 * 359.97438 * 24 23 21 43 43 H 1.07994 * 119.96614 * 180.25069 * 25 24 23 44 44 H 1.07996 * 119.92441 * 179.71729 * 26 25 24 45 45 H 1.07998 * 119.96376 * 179.97438 * 27 26 25 46 46 H 1.07999 * 120.03480 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1341 0.7041 -1.1889 5 6 3.4277 0.0022 -2.3273 6 1 3.1511 0.3991 -3.2929 7 6 4.0807 -1.2196 -2.2404 8 7 4.0899 -2.0354 -3.2725 9 14 4.9464 -1.7053 -0.6580 10 1 4.0361 -2.5373 0.1691 11 1 6.1699 -2.4823 -0.9815 12 1 5.3217 -0.4825 0.0965 13 6 3.2981 2.0763 -1.1613 14 7 2.9486 2.8859 -0.1850 15 7 3.2461 4.1001 -0.4794 16 7 3.7887 4.1581 -1.6473 17 7 3.8434 2.8414 -2.1368 18 6 4.3757 2.3930 -3.4259 19 6 3.2609 2.4148 -4.4735 20 6 3.8170 1.9472 -5.8199 21 7 2.7496 1.9687 -6.8231 22 6 1.9168 0.7817 -7.0322 23 6 2.5260 3.1209 -7.5803 24 6 3.3109 4.2491 -7.3794 25 6 3.0903 5.3852 -8.1331 26 6 2.0823 5.4037 -9.0797 27 6 1.2955 4.2840 -9.2785 28 6 1.5145 3.1429 -8.5322 29 1 -1.0500 -0.0003 0.0001 30 1 3.0091 0.5053 0.8953 31 1 3.0099 -1.0268 -0.0108 32 1 4.5466 -2.8890 -3.2118 33 1 5.1806 3.0586 -3.7379 34 1 4.7613 1.3783 -3.3267 35 1 2.4560 1.7493 -4.1615 36 1 2.8755 3.4297 -4.5727 37 1 4.6217 2.6130 -6.1317 38 1 4.2027 0.9325 -5.7210 39 1 1.0494 0.8258 -6.3736 40 1 1.5841 0.7494 -8.0697 41 1 2.4975 -0.1134 -6.8088 42 1 4.0952 4.2369 -6.6369 43 1 3.7028 6.2614 -7.9803 44 1 1.9088 6.2949 -9.6646 45 1 0.5089 4.3020 -10.0183 46 1 0.8994 2.2689 -8.6877 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332977881.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:43:16 Heat of formation + Delta-G solvation = 224.619621 kcal Electronic energy + Delta-G solvation = -29547.446805 eV Core-core repulsion = 25670.286112 eV Total energy + Delta-G solvation = -3877.160694 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.171 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.50076 -40.52685 -39.08262 -37.77354 -36.18203 -34.55206 -33.86088 -32.96547 -31.89257 -31.70129 -30.52021 -28.71178 -28.45287 -26.64462 -25.71938 -24.10271 -23.15291 -22.78748 -22.28604 -21.41989 -20.22863 -19.18093 -18.69860 -17.96130 -17.54197 -17.36418 -17.10214 -16.52774 -16.27373 -16.02188 -15.65440 -15.47502 -15.14631 -15.04924 -14.81686 -14.56742 -14.38096 -14.18941 -13.98062 -13.77897 -13.46282 -13.39192 -13.14014 -12.97561 -12.83177 -12.77849 -12.43447 -12.25590 -12.22952 -11.86908 -11.73452 -11.61626 -11.58825 -11.36809 -11.17393 -11.12894 -10.87837 -10.72789 -9.77788 -9.37957 -8.57283 -8.20113 -6.25000 0.43594 0.58519 0.75339 0.95319 1.18508 1.33446 1.39251 1.66746 1.78556 1.91620 2.11248 2.20383 2.64597 2.79272 3.04652 3.51834 3.58484 3.83508 3.89908 4.04399 4.07985 4.12473 4.15203 4.18352 4.29950 4.35336 4.40990 4.46497 4.55717 4.63197 4.67234 4.69046 4.75892 4.78438 4.90679 4.93243 5.02649 5.09388 5.12473 5.21441 5.39115 5.42568 5.48234 5.65753 5.79044 5.97822 6.05186 6.29158 6.34107 6.61997 6.68866 6.94212 7.14823 7.90779 8.51475 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.011953 B = 0.003540 C = 0.003188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2341.907812 B = 7907.588358 C = 8782.133063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.230 4.230 3 C 0.225 3.775 4 N -0.433 5.433 5 C -0.349 4.349 6 H 0.108 0.892 7 C 0.049 3.951 8 N -0.873 5.873 9 Si 0.909 3.091 10 H -0.255 1.255 11 H -0.279 1.279 12 H -0.263 1.263 13 C 0.477 3.523 14 N -0.424 5.424 15 N -0.050 5.050 16 N -0.136 5.136 17 N -0.411 5.411 18 C 0.130 3.870 19 C -0.129 4.129 20 C 0.138 3.862 21 N -0.632 5.632 22 C 0.095 3.905 23 C 0.201 3.799 24 C -0.214 4.214 25 C -0.081 4.081 26 C -0.191 4.191 27 C -0.079 4.079 28 C -0.215 4.215 29 H 0.253 0.747 30 H 0.100 0.900 31 H 0.094 0.906 32 H 0.285 0.715 33 H 0.111 0.889 34 H 0.120 0.880 35 H 0.047 0.953 36 H 0.054 0.946 37 H 0.093 0.907 38 H 0.082 0.918 39 H 0.034 0.966 40 H 0.083 0.917 41 H 0.069 0.931 42 H 0.123 0.877 43 H 0.136 0.864 44 H 0.137 0.863 45 H 0.141 0.859 46 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.635 3.496 -9.434 10.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.231 4.231 3 C 0.103 3.897 4 N -0.142 5.142 5 C -0.477 4.477 6 H 0.125 0.875 7 C -0.159 4.159 8 N -0.508 5.508 9 Si 0.734 3.266 10 H -0.181 1.181 11 H -0.206 1.206 12 H -0.188 1.188 13 C 0.116 3.884 14 N -0.293 5.293 15 N -0.046 5.046 16 N -0.125 5.125 17 N -0.215 5.215 18 C 0.008 3.992 19 C -0.169 4.169 20 C 0.014 3.986 21 N -0.341 5.341 22 C -0.048 4.048 23 C 0.099 3.901 24 C -0.237 4.237 25 C -0.099 4.099 26 C -0.211 4.211 27 C -0.097 4.097 28 C -0.237 4.237 29 H 0.269 0.731 30 H 0.118 0.882 31 H 0.111 0.889 32 H 0.095 0.905 33 H 0.130 0.870 34 H 0.138 0.862 35 H 0.066 0.934 36 H 0.073 0.927 37 H 0.111 0.889 38 H 0.101 0.899 39 H 0.053 0.947 40 H 0.102 0.898 41 H 0.088 0.912 42 H 0.141 0.859 43 H 0.154 0.846 44 H 0.154 0.846 45 H 0.159 0.841 46 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -1.625 4.171 -8.882 9.946 hybrid contribution 0.303 -1.382 0.228 1.433 sum -1.322 2.788 -8.653 9.187 Atomic orbital electron populations 1.25680 0.96570 0.99255 0.98240 1.23772 0.95377 1.01796 1.02189 1.18694 0.85150 0.97479 0.88378 1.41506 1.61317 0.97763 1.13660 1.19263 1.39195 1.03443 0.85774 0.87473 1.25711 0.95244 0.95558 0.99436 1.69742 1.39810 1.09371 1.31844 0.86381 0.79436 0.79525 0.81234 1.18082 1.20577 1.18766 1.22002 0.91517 0.88621 0.86244 1.74604 1.33418 0.96063 1.25211 1.77525 1.07261 1.12897 1.06893 1.82122 1.25399 0.97441 1.07553 1.50925 1.49343 1.04123 1.17111 1.22190 0.96581 1.03281 0.77118 1.22244 0.98139 1.00989 0.95567 1.21242 0.89368 1.02861 0.85149 1.46517 1.36729 1.11710 1.39188 1.21659 0.94494 0.86887 1.01723 1.18140 0.94202 0.86802 0.90932 1.20910 1.03716 0.93750 1.05280 1.21184 0.97147 0.97245 0.94346 1.21199 0.98514 0.99654 1.01727 1.21190 0.98518 0.92161 0.97857 1.20923 1.01299 1.00764 1.00718 0.73051 0.88170 0.88884 0.90508 0.87045 0.86231 0.93425 0.92696 0.88925 0.89922 0.94697 0.89829 0.91220 0.85934 0.84603 0.84556 0.84149 0.85379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.93 19.25 74.32 1.43 -4.50 16 2 C -0.23 -8.99 13.66 31.12 0.43 -8.57 16 3 C 0.22 9.15 4.57 84.57 0.39 9.53 16 4 N -0.43 -19.11 2.20 -532.67 -1.17 -20.28 16 5 C -0.35 -15.77 7.37 84.03 0.62 -15.15 16 6 H 0.11 5.00 4.29 -2.91 -0.01 4.99 16 7 C 0.05 2.20 5.37 84.87 0.46 2.65 16 8 N -0.87 -40.95 13.96 21.65 0.30 -40.65 16 9 Si 0.91 35.89 24.77 68.60 1.70 37.59 16 10 H -0.26 -9.53 6.76 99.48 0.67 -8.85 16 11 H -0.28 -10.93 7.11 99.48 0.71 -10.22 16 12 H -0.26 -10.62 7.06 99.48 0.70 -9.91 16 13 C 0.48 21.51 8.34 260.63 2.17 23.69 16 14 N -0.42 -19.74 11.68 -58.67 -0.69 -20.43 16 15 N -0.05 -2.27 13.38 37.02 0.50 -1.78 16 16 N -0.14 -5.87 13.93 37.02 0.52 -5.35 16 17 N -0.41 -17.08 3.69 -349.60 -1.29 -18.37 16 18 C 0.13 4.44 5.63 86.38 0.49 4.93 16 19 C -0.13 -4.21 5.26 30.59 0.16 -4.05 16 20 C 0.14 3.79 5.20 86.38 0.45 4.24 16 21 N -0.63 -17.36 3.01 -722.18 -2.17 -19.53 16 22 C 0.10 2.43 10.23 127.77 1.31 3.73 16 23 C 0.20 5.43 6.55 38.21 0.25 5.68 16 24 C -0.21 -5.52 9.20 22.40 0.21 -5.31 16 25 C -0.08 -1.81 10.04 22.25 0.22 -1.59 16 26 C -0.19 -3.95 10.04 22.29 0.22 -3.72 16 27 C -0.08 -1.66 10.04 22.25 0.22 -1.43 16 28 C -0.21 -5.20 9.21 22.40 0.21 -5.00 16 29 H 0.25 5.70 7.80 -4.42 -0.03 5.67 16 30 H 0.10 3.88 7.85 -2.39 -0.02 3.86 16 31 H 0.09 3.71 3.39 -2.39 -0.01 3.70 16 32 H 0.28 12.57 8.31 -92.71 -0.77 11.80 16 33 H 0.11 3.15 8.14 -2.39 -0.02 3.13 16 34 H 0.12 4.40 5.60 -2.38 -0.01 4.39 16 35 H 0.05 1.86 6.49 -2.39 -0.02 1.85 16 36 H 0.05 1.89 8.14 -2.38 -0.02 1.87 16 37 H 0.09 2.19 6.21 -2.39 -0.01 2.17 16 38 H 0.08 2.39 7.89 -2.39 -0.02 2.37 16 39 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.08 1.75 6.20 -2.38 -0.01 1.73 16 41 H 0.07 1.83 7.89 -2.38 -0.02 1.82 16 42 H 0.12 3.02 6.15 -2.91 -0.02 3.00 16 43 H 0.14 2.43 8.06 -2.91 -0.02 2.41 16 44 H 0.14 2.13 8.06 -2.91 -0.02 2.10 16 45 H 0.14 2.18 8.06 -2.91 -0.02 2.15 16 46 H 0.13 2.77 6.14 -2.91 -0.02 2.75 16 Total: -1.00 -57.85 380.33 7.90 -49.95 By element: Atomic # 1 Polarization: 32.73 SS G_CDS: 0.98 Total: 33.71 kcal Atomic # 6 Polarization: -4.09 SS G_CDS: 9.23 Total: 5.14 kcal Atomic # 7 Polarization: -122.38 SS G_CDS: -4.00 Total: -126.38 kcal Atomic # 14 Polarization: 35.89 SS G_CDS: 1.70 Total: 37.59 kcal Total: -57.85 7.90 -49.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332977881.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 274.565 kcal (2) G-P(sol) polarization free energy of solvation -57.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 216.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.946 kcal (6) G-S(sol) free energy of system = (1) + (5) 224.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds