Wall clock time and date at job start Wed Apr 1 2020 00:03:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42903 * 113.99739 * 2 1 4 4 C 1.53005 * 109.47000 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.70132 * 182.40478 * 4 3 2 6 6 C 1.53713 * 109.74537 * 303.17013 * 4 3 2 7 7 O 1.42957 * 109.14497 * 172.16705 * 6 4 3 8 8 C 1.42960 * 114.16620 * 297.28797 * 7 6 4 9 9 C 1.53294 * 109.22061 * 62.58605 * 8 7 6 10 10 N 1.47149 * 109.68214 * 61.86527 * 4 3 2 11 11 C 1.34776 * 120.98377 * 9.76584 * 10 4 3 12 12 O 1.21350 * 120.00181 * 6.28633 * 11 10 4 13 13 C 1.49449 * 119.99940 * 186.28604 * 11 10 4 14 14 O 1.21346 * 119.99930 * 7.60786 * 13 11 10 15 15 N 1.34779 * 119.99750 * 187.60693 * 13 11 10 16 16 C 1.46917 * 120.63381 * 357.26030 * 15 13 11 17 17 C 1.53194 * 108.89158 * 126.46365 * 16 15 13 18 18 C 1.53045 * 109.31325 * 54.56889 * 17 16 15 19 19 C 1.53039 * 109.53496 * 298.63415 * 18 17 16 20 20 H 1.08996 * 109.49862 * 301.40995 * 19 18 17 21 21 C 1.50699 * 109.49759 * 181.31114 * 19 18 17 22 22 H 1.08000 * 120.00154 * 0.02562 * 21 19 18 23 23 C 1.37883 * 120.00184 * 179.97438 * 21 19 18 24 24 N 1.31511 * 119.99416 * 0.02562 * 23 21 19 25 25 Si 1.86800 * 119.99833 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.46748 * 90.00744 * 25 23 21 27 27 H 1.48499 * 109.46649 * 210.00159 * 25 23 21 28 28 H 1.48492 * 109.47274 * 330.00662 * 25 23 21 29 29 C 1.46965 * 120.65080 * 177.08425 * 15 13 11 30 30 H 1.08998 * 109.47278 * 60.00396 * 1 2 3 31 31 H 1.09000 * 109.46466 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47275 * 299.99778 * 1 2 3 33 33 H 1.08999 * 109.47669 * 59.99390 * 3 2 1 34 34 H 1.09006 * 109.46514 * 299.99542 * 3 2 1 35 35 H 1.09007 * 109.65315 * 52.19921 * 6 4 3 36 36 H 1.09005 * 109.44413 * 292.00434 * 6 4 3 37 37 H 1.09004 * 109.51391 * 302.65650 * 8 7 6 38 38 H 1.09003 * 109.50857 * 182.50592 * 8 7 6 39 39 H 1.09006 * 109.67805 * 187.97439 * 9 8 7 40 40 H 1.08995 * 109.71109 * 67.43836 * 9 8 7 41 41 H 1.09001 * 109.58628 * 6.61465 * 16 15 13 42 42 H 1.08995 * 109.59251 * 246.32809 * 16 15 13 43 43 H 1.09004 * 109.49687 * 174.51833 * 17 16 15 44 44 H 1.08999 * 109.50282 * 294.61909 * 17 16 15 45 45 H 1.08999 * 109.45712 * 58.64852 * 18 17 16 46 46 H 1.09000 * 109.46366 * 178.62500 * 18 17 16 47 47 H 0.97009 * 119.99509 * 179.97438 * 24 23 21 48 48 H 1.08999 * 109.46433 * 113.74840 * 29 15 13 49 49 H 1.09000 * 109.59779 * 353.39317 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 1 3.9827 2.1778 0.0424 6 6 3.9912 0.3544 1.2100 7 8 5.3926 0.0948 1.0997 8 6 5.7556 -0.6827 -0.0437 9 6 5.3890 0.0895 -1.3162 10 7 3.9775 0.4945 -1.2228 11 6 3.1162 0.2458 -2.2292 12 8 1.9881 0.6909 -2.1864 13 6 3.5505 -0.5782 -3.3979 14 8 4.6273 -1.1374 -3.3793 15 7 2.7462 -0.7001 -4.4725 16 6 1.4151 -0.0786 -4.4856 17 6 1.2885 0.7964 -5.7367 18 6 1.6015 -0.0447 -6.9764 19 6 3.0388 -0.5636 -6.8933 20 1 3.7261 0.2791 -6.8187 21 6 3.3566 -1.3648 -8.1294 22 1 2.6086 -1.4913 -8.8981 23 6 4.6027 -1.9357 -8.2795 24 7 5.5137 -1.7812 -7.3437 25 14 4.9968 -2.9283 -9.8122 26 1 5.5569 -2.0297 -10.8533 27 1 5.9910 -3.9797 -9.4787 28 1 3.7559 -3.5643 -10.3226 29 6 3.1852 -1.4539 -5.6552 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3632 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.6885 1.8465 0.8899 34 1 1.6885 1.8463 -0.8901 35 1 3.4466 -0.5896 1.2330 36 1 3.7950 0.9112 2.1264 37 1 5.2176 -1.6306 -0.0252 38 1 6.8289 -0.8722 -0.0293 39 1 5.5305 -0.5502 -2.1873 40 1 6.0198 0.9740 -1.4040 41 1 1.2906 0.5374 -3.5950 42 1 0.6497 -0.8543 -4.5033 43 1 0.2725 1.1849 -5.8077 44 1 1.9923 1.6263 -5.6731 45 1 0.9131 -0.8884 -7.0260 46 1 1.4883 0.5693 -7.8699 47 1 6.3903 -2.1831 -7.4492 48 1 2.5658 -2.3435 -5.7695 49 1 4.2287 -1.7456 -5.5363 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001335136654.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:03:34 Heat of formation + Delta-G solvation = -119.455868 kcal Electronic energy + Delta-G solvation = -32579.436316 eV Core-core repulsion = 28315.460968 eV Total energy + Delta-G solvation = -4263.975348 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.40624 -40.61937 -39.32584 -38.65755 -38.20996 -36.04143 -35.09301 -33.50892 -33.19948 -31.56804 -29.84803 -27.86215 -27.50449 -26.73028 -26.46364 -24.65434 -23.90616 -23.50050 -22.35862 -20.96710 -20.15567 -18.64609 -18.29541 -17.95887 -17.64670 -17.50137 -17.08068 -16.81427 -16.49850 -16.40177 -16.26854 -16.08055 -15.57358 -15.44856 -15.38617 -15.19509 -14.64103 -14.63542 -14.47873 -14.18570 -13.76225 -13.63058 -13.48692 -13.22646 -12.91311 -12.87811 -12.67632 -12.46739 -12.30547 -12.28292 -12.12727 -11.99851 -11.80136 -11.71769 -11.28376 -11.22809 -11.01579 -10.81587 -10.54510 -10.49616 -9.72383 -9.54532 -9.37551 -8.12313 -6.28548 0.36705 1.23435 1.42047 1.42835 1.53144 2.15712 2.32784 2.42942 2.81044 2.95442 3.12827 3.18141 3.64303 3.84108 3.97303 4.08251 4.14197 4.17851 4.23748 4.30446 4.37437 4.44993 4.58325 4.62465 4.66670 4.68364 4.70951 4.75964 4.78250 4.81540 4.86696 4.91539 4.97276 5.03616 5.13725 5.19730 5.23454 5.29369 5.36908 5.55248 5.59761 5.83928 5.91513 5.98302 6.06763 6.28066 6.35952 6.41516 6.75408 6.83245 7.01785 7.41259 8.91658 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.015896 B = 0.003603 C = 0.003073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.028190 B = 7768.374091 C = 9108.105080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.405 6.405 3 C 0.054 3.946 4 C 0.107 3.893 5 H 0.116 0.884 6 C 0.058 3.942 7 O -0.390 6.390 8 C 0.059 3.941 9 C 0.015 3.985 10 N -0.576 5.576 11 C 0.530 3.470 12 O -0.496 6.496 13 C 0.485 3.515 14 O -0.545 6.545 15 N -0.569 5.569 16 C 0.049 3.951 17 C -0.122 4.122 18 C -0.107 4.107 19 C 0.041 3.959 20 H -0.009 1.009 21 C -0.537 4.537 22 H 0.061 0.939 23 C 0.014 3.986 24 N -0.913 5.913 25 Si 0.957 3.043 26 H -0.276 1.276 27 H -0.285 1.285 28 H -0.265 1.265 29 C 0.121 3.879 30 H 0.040 0.960 31 H 0.079 0.921 32 H 0.054 0.946 33 H 0.075 0.925 34 H 0.086 0.914 35 H 0.054 0.946 36 H 0.133 0.867 37 H 0.046 0.954 38 H 0.126 0.874 39 H 0.143 0.857 40 H 0.083 0.917 41 H 0.160 0.840 42 H 0.067 0.933 43 H 0.098 0.902 44 H 0.047 0.953 45 H 0.054 0.946 46 H 0.053 0.947 47 H 0.262 0.738 48 H 0.040 0.960 49 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.628 7.217 18.269 21.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.325 6.325 3 C -0.022 4.022 4 C 0.006 3.994 5 H 0.133 0.867 6 C -0.019 4.019 7 O -0.308 6.308 8 C -0.018 4.018 9 C -0.106 4.106 10 N -0.310 5.310 11 C 0.314 3.686 12 O -0.374 6.374 13 C 0.269 3.731 14 O -0.426 6.426 15 N -0.299 5.299 16 C -0.071 4.071 17 C -0.160 4.160 18 C -0.145 4.145 19 C 0.021 3.979 20 H 0.009 0.991 21 C -0.576 4.576 22 H 0.079 0.921 23 C -0.186 4.186 24 N -0.551 5.551 25 Si 0.783 3.217 26 H -0.201 1.201 27 H -0.211 1.211 28 H -0.189 1.189 29 C -0.001 4.001 30 H 0.059 0.941 31 H 0.098 0.902 32 H 0.072 0.928 33 H 0.093 0.907 34 H 0.103 0.897 35 H 0.072 0.928 36 H 0.151 0.849 37 H 0.065 0.935 38 H 0.143 0.857 39 H 0.160 0.840 40 H 0.101 0.899 41 H 0.176 0.824 42 H 0.085 0.915 43 H 0.116 0.884 44 H 0.066 0.934 45 H 0.073 0.927 46 H 0.071 0.929 47 H 0.071 0.929 48 H 0.059 0.941 49 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -7.265 7.007 18.477 21.054 hybrid contribution 0.348 -0.693 -1.424 1.622 sum -6.916 6.313 17.053 19.455 Atomic orbital electron populations 1.22665 0.80009 1.02557 1.00377 1.87795 1.20997 1.28118 1.95543 1.22930 0.90122 0.86466 1.02671 1.22608 0.95458 0.97535 0.83840 0.86654 1.23144 0.81358 0.99741 0.97686 1.87918 1.24234 1.73308 1.45372 1.22943 1.02513 0.92777 0.83606 1.23851 0.79739 1.02829 1.04175 1.47951 1.10423 1.56476 1.16126 1.19738 0.85103 0.80453 0.83283 1.90153 1.19504 1.51810 1.75947 1.20650 0.84717 0.82935 0.84798 1.90305 1.22801 1.49546 1.79982 1.48516 1.17325 1.49734 1.14352 1.23408 0.81488 0.98404 1.03756 1.21872 1.02341 0.97616 0.94167 1.21560 0.96799 0.98784 0.97337 1.18885 0.92896 0.93718 0.92355 0.99132 1.21477 0.98433 1.33226 1.04450 0.92088 1.25841 0.96206 0.97262 0.99258 1.70039 1.05199 1.45182 1.34685 0.85563 0.78133 0.78386 0.79643 1.20140 1.21112 1.18898 1.21963 1.01271 0.93481 0.83341 0.94117 0.90222 0.92782 0.90702 0.89657 0.92790 0.84895 0.93534 0.85663 0.84044 0.89922 0.82380 0.91512 0.88389 0.93392 0.92675 0.92864 0.92897 0.94122 0.89475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.74 10.80 113.37 1.22 1.96 16 2 O -0.41 -9.63 7.91 -126.44 -1.00 -10.63 16 3 C 0.05 1.06 4.70 71.98 0.34 1.40 16 4 C 0.11 2.22 3.49 45.11 0.16 2.38 16 5 H 0.12 1.96 8.14 -2.39 -0.02 1.94 16 6 C 0.06 1.11 6.23 72.22 0.45 1.56 16 7 O -0.39 -8.84 10.74 -148.98 -1.60 -10.44 16 8 C 0.06 1.38 6.98 72.08 0.50 1.89 16 9 C 0.02 0.42 6.49 86.35 0.56 0.98 16 10 N -0.58 -16.07 3.00 -794.31 -2.38 -18.46 16 11 C 0.53 17.43 7.11 87.27 0.62 18.05 16 12 O -0.50 -15.03 7.81 19.30 0.15 -14.88 16 13 C 0.49 19.83 7.65 87.27 0.67 20.49 16 14 O -0.55 -24.91 12.56 -3.23 -0.04 -24.95 16 15 N -0.57 -23.79 2.98 -820.41 -2.44 -26.24 16 16 C 0.05 1.67 6.23 86.36 0.54 2.21 16 17 C -0.12 -4.03 6.08 30.67 0.19 -3.84 16 18 C -0.11 -4.30 5.11 30.62 0.16 -4.15 16 19 C 0.04 2.06 2.25 -11.46 -0.03 2.03 16 20 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 21 C -0.54 -29.43 8.56 25.60 0.22 -29.21 16 22 H 0.06 3.23 7.74 -2.91 -0.02 3.21 16 23 C 0.01 0.78 5.31 84.66 0.45 1.23 16 24 N -0.91 -53.76 11.40 21.45 0.24 -53.51 16 25 Si 0.96 43.60 29.54 68.60 2.03 45.63 16 26 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 27 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 28 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 29 C 0.12 6.02 5.39 86.36 0.47 6.49 16 30 H 0.04 0.79 8.07 -2.39 -0.02 0.77 16 31 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.09 1.93 5.75 -4.60 -0.03 1.90 16 35 H 0.05 1.21 7.41 -2.38 -0.02 1.19 16 36 H 0.13 1.70 8.14 -2.38 -0.02 1.68 16 37 H 0.05 1.19 8.14 -2.38 -0.02 1.17 16 38 H 0.13 2.42 8.14 -2.39 -0.02 2.40 16 39 H 0.14 4.95 3.85 -73.44 -0.28 4.67 16 40 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 41 H 0.16 5.00 3.77 -77.03 -0.29 4.71 16 42 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 43 H 0.10 2.52 8.14 -2.38 -0.02 2.50 16 44 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 45 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 46 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 47 H 0.26 14.80 8.31 -92.70 -0.77 14.03 16 48 H 0.04 2.03 8.14 -2.39 -0.02 2.01 16 49 H 0.09 5.02 5.15 -2.39 -0.01 5.01 16 Total: -1.00 -66.75 371.84 1.85 -64.90 By element: Atomic # 1 Polarization: 24.73 SS G_CDS: 0.39 Total: 25.11 kcal Atomic # 6 Polarization: 16.96 SS G_CDS: 6.51 Total: 23.47 kcal Atomic # 7 Polarization: -93.62 SS G_CDS: -4.58 Total: -98.21 kcal Atomic # 8 Polarization: -58.41 SS G_CDS: -2.49 Total: -60.90 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Total: -66.75 1.85 -64.90 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335136654.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.555 kcal (2) G-P(sol) polarization free energy of solvation -66.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds