Wall clock time and date at job start Wed Apr 1 2020 00:03:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42899 * 113.99622 * 2 1 4 4 C 1.53003 * 109.46863 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.70572 * 181.81001 * 4 3 2 6 6 C 1.53296 * 109.68003 * 302.34075 * 4 3 2 7 7 O 1.42961 * 109.22133 * 172.02839 * 6 4 3 8 8 C 1.42958 * 114.16768 * 297.41678 * 7 6 4 9 9 C 1.52883 * 109.29742 * 62.44867 * 8 7 6 10 10 N 1.47147 * 109.68245 * 61.26856 * 4 3 2 11 11 C 1.34774 * 120.98455 * 9.72082 * 10 4 3 12 12 O 1.21346 * 119.99739 * 6.84000 * 11 10 4 13 13 C 1.49443 * 120.00118 * 186.84678 * 11 10 4 14 14 O 1.21350 * 120.00261 * 5.88707 * 13 11 10 15 15 N 1.34772 * 120.00255 * 185.89050 * 13 11 10 16 16 C 1.46928 * 120.63034 * 353.01033 * 15 13 11 17 17 C 1.53188 * 108.77531 * 233.61347 * 16 15 13 18 18 C 1.53044 * 109.31378 * 305.36099 * 17 16 15 19 19 C 1.53033 * 109.53663 * 61.36739 * 18 17 16 20 20 H 1.08995 * 109.50271 * 58.61869 * 19 18 17 21 21 C 1.50708 * 109.49958 * 178.68700 * 19 18 17 22 22 H 1.08002 * 119.99503 * 359.92935 * 21 19 18 23 23 C 1.37868 * 119.99866 * 179.97438 * 21 19 18 24 24 N 1.31510 * 120.00510 * 359.97438 * 23 21 19 25 25 Si 1.86810 * 119.99704 * 179.72082 * 23 21 19 26 26 H 1.48502 * 109.46897 * 89.99950 * 25 23 21 27 27 H 1.48501 * 109.47135 * 210.00123 * 25 23 21 28 28 H 1.48501 * 109.46756 * 330.00179 * 25 23 21 29 29 C 1.46930 * 120.60955 * 173.03569 * 15 13 11 30 30 H 1.08997 * 109.47283 * 300.00138 * 1 2 3 31 31 H 1.09006 * 109.47503 * 59.99944 * 1 2 3 32 32 H 1.09004 * 109.47435 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47419 * 60.00449 * 3 2 1 34 34 H 1.09005 * 109.47103 * 299.99885 * 3 2 1 35 35 H 1.09005 * 109.51271 * 291.94617 * 6 4 3 36 36 H 1.08991 * 109.51316 * 52.05378 * 6 4 3 37 37 H 1.08996 * 109.51617 * 182.50717 * 8 7 6 38 38 H 1.08995 * 109.51624 * 302.61024 * 8 7 6 39 39 H 1.08994 * 109.61992 * 188.11419 * 9 8 7 40 40 H 1.09010 * 109.52229 * 67.70081 * 9 8 7 41 41 H 1.08994 * 109.59044 * 113.82138 * 16 15 13 42 42 H 1.09004 * 109.69996 * 353.46832 * 16 15 13 43 43 H 1.09002 * 109.50097 * 185.41148 * 17 16 15 44 44 H 1.08995 * 109.53013 * 65.32986 * 17 16 15 45 45 H 1.09002 * 109.46017 * 301.34515 * 18 17 16 46 46 H 1.08996 * 109.46249 * 181.38878 * 18 17 16 47 47 H 0.97003 * 120.00038 * 179.97438 * 24 23 21 48 48 H 1.09006 * 109.61463 * 6.61570 * 29 15 13 49 49 H 1.09001 * 109.56416 * 246.19298 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 3.9827 2.1782 0.0318 6 6 3.9895 0.3740 1.2185 7 8 5.3902 0.1082 1.1118 8 6 5.7506 -0.6857 -0.0211 9 6 5.3852 0.0658 -1.3014 10 7 3.9763 0.4819 -1.2159 11 6 3.1141 0.2219 -2.2186 12 8 1.9890 0.6751 -2.1839 13 6 3.5436 -0.6245 -3.3729 14 8 4.6298 -1.1653 -3.3577 15 7 2.7246 -0.7872 -4.4308 16 6 1.3506 -0.2678 -4.4006 17 6 0.3851 -1.4073 -4.7412 18 6 0.7914 -2.0326 -6.0777 19 6 2.2026 -2.6133 -5.9630 20 1 2.2256 -3.3595 -5.1688 21 6 2.5894 -3.2571 -7.2695 22 1 1.8974 -3.2538 -8.0988 23 6 3.8260 -3.8512 -7.4059 24 7 4.6684 -3.8555 -6.3960 25 14 4.3024 -4.6561 -9.0229 26 1 4.9627 -3.6549 -9.8986 27 1 5.2389 -5.7783 -8.7603 28 1 3.0842 -5.1749 -9.6953 29 6 3.1892 -1.4879 -5.6358 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.6885 1.8464 0.8900 34 1 1.6884 1.8464 -0.8900 35 1 3.7953 0.9435 2.1274 36 1 3.4413 -0.5673 1.2546 37 1 6.8232 -0.8786 -0.0042 38 1 5.2101 -1.6316 0.0103 39 1 5.5231 -0.5888 -2.1620 40 1 6.0221 0.9447 -1.4023 41 1 1.2458 0.5315 -5.1342 42 1 1.1251 0.1173 -3.4061 43 1 -0.6290 -1.0147 -4.8166 44 1 0.4247 -2.1646 -3.9583 45 1 0.7749 -1.2693 -6.8556 46 1 0.0914 -2.8276 -6.3344 47 1 5.5383 -4.2738 -6.4918 48 1 4.1780 -1.9098 -5.4554 49 1 3.2350 -0.7881 -6.4702 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001335136656.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:03:42 Heat of formation + Delta-G solvation = -100.253769 kcal Electronic energy + Delta-G solvation = -32672.205504 eV Core-core repulsion = 28409.062821 eV Total energy + Delta-G solvation = -4263.142683 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.13561 -39.29942 -38.15485 -37.28883 -36.97065 -34.81620 -33.24627 -32.31485 -31.76484 -29.76596 -28.76986 -26.95251 -25.88741 -25.50256 -24.99055 -23.32119 -22.81511 -21.83641 -21.02455 -19.55729 -18.61959 -17.24282 -16.94693 -16.62585 -16.42334 -16.08635 -15.80432 -15.50154 -15.44915 -15.27617 -14.96100 -14.53748 -14.44281 -14.10993 -14.06047 -13.78944 -13.30421 -13.09864 -12.79658 -12.68187 -12.53803 -12.26843 -12.17540 -11.92165 -11.76266 -11.53779 -11.23155 -11.09923 -10.96694 -10.82831 -10.58712 -10.46017 -10.28264 -10.25301 -9.96634 -9.68455 -9.47380 -9.13896 -9.07926 -8.62497 -8.48461 -8.07435 -7.87160 -6.03255 -4.11820 1.77340 2.50549 3.28834 3.36354 3.38886 3.59869 3.66066 3.75382 3.86095 4.39856 4.49274 4.59707 4.82398 4.92742 5.04251 5.19018 5.21445 5.26609 5.29046 5.38538 5.48717 5.57234 5.62465 5.66280 5.69132 5.73965 5.76325 5.87128 5.90361 6.04918 6.19082 6.32058 6.38730 6.52040 6.58453 6.69339 6.85111 6.96649 7.00056 7.03856 7.14985 7.18793 7.28847 7.57186 7.80347 7.92062 7.97385 8.16017 8.33759 8.55627 8.92120 9.53907 11.02022 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.015469 B = 0.003701 C = 0.003146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.608539 B = 7563.216368 C = 8898.167416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.380 6.380 3 C 0.054 3.946 4 C 0.112 3.888 5 H 0.094 0.906 6 C 0.055 3.945 7 O -0.386 6.386 8 C 0.051 3.949 9 C 0.014 3.986 10 N -0.580 5.580 11 C 0.526 3.474 12 O -0.504 6.504 13 C 0.498 3.502 14 O -0.514 6.514 15 N -0.561 5.561 16 C 0.052 3.948 17 C -0.130 4.130 18 C -0.113 4.113 19 C 0.041 3.959 20 H 0.030 0.970 21 C -0.520 4.520 22 H 0.059 0.941 23 C 0.063 3.937 24 N -0.881 5.881 25 Si 0.893 3.107 26 H -0.280 1.280 27 H -0.286 1.286 28 H -0.274 1.274 29 C 0.106 3.894 30 H 0.031 0.969 31 H 0.046 0.954 32 H 0.079 0.921 33 H 0.042 0.958 34 H 0.098 0.902 35 H 0.101 0.899 36 H 0.068 0.932 37 H 0.106 0.894 38 H 0.058 0.942 39 H 0.173 0.827 40 H 0.069 0.931 41 H 0.055 0.945 42 H 0.145 0.855 43 H 0.058 0.942 44 H 0.057 0.943 45 H 0.049 0.951 46 H 0.050 0.950 47 H 0.264 0.736 48 H 0.125 0.875 49 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.988 11.483 14.295 18.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.299 6.299 3 C -0.023 4.023 4 C 0.009 3.991 5 H 0.112 0.888 6 C -0.023 4.023 7 O -0.304 6.304 8 C -0.026 4.026 9 C -0.106 4.106 10 N -0.315 5.315 11 C 0.311 3.689 12 O -0.382 6.382 13 C 0.280 3.720 14 O -0.394 6.394 15 N -0.292 5.292 16 C -0.069 4.069 17 C -0.168 4.168 18 C -0.151 4.151 19 C 0.022 3.978 20 H 0.048 0.952 21 C -0.559 4.559 22 H 0.077 0.923 23 C -0.140 4.140 24 N -0.519 5.519 25 Si 0.720 3.280 26 H -0.206 1.206 27 H -0.212 1.212 28 H -0.199 1.199 29 C -0.014 4.014 30 H 0.050 0.950 31 H 0.065 0.935 32 H 0.098 0.902 33 H 0.060 0.940 34 H 0.116 0.884 35 H 0.119 0.881 36 H 0.086 0.914 37 H 0.124 0.876 38 H 0.076 0.924 39 H 0.189 0.811 40 H 0.087 0.913 41 H 0.073 0.927 42 H 0.161 0.839 43 H 0.077 0.923 44 H 0.076 0.924 45 H 0.067 0.933 46 H 0.069 0.931 47 H 0.074 0.926 48 H 0.143 0.857 49 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -3.594 11.263 14.465 18.682 hybrid contribution -0.065 -0.273 -1.054 1.090 sum -3.659 10.990 13.412 17.721 Atomic orbital electron populations 1.22583 0.81068 1.02257 0.99545 1.87835 1.19705 1.26968 1.95343 1.22894 0.90731 0.87028 1.01642 1.22166 0.94724 0.96675 0.85573 0.88802 1.22944 0.82451 1.00204 0.96659 1.87915 1.23330 1.72557 1.46640 1.22917 1.01506 0.93592 0.84603 1.23935 0.79709 1.02647 1.04349 1.47904 1.10800 1.56377 1.16395 1.20442 0.84509 0.80474 0.83430 1.90194 1.19775 1.51523 1.76729 1.19890 0.85516 0.82878 0.83725 1.90262 1.22005 1.49214 1.77895 1.48473 1.12646 1.52789 1.15275 1.23109 0.80565 0.96000 1.07260 1.21899 0.97594 0.97970 0.99306 1.21662 0.99587 0.99081 0.94748 1.18953 0.88805 0.92617 0.97396 0.95206 1.21093 1.00673 1.36172 0.97919 0.92299 1.25047 0.96615 0.95774 0.96546 1.69874 1.08013 1.43903 1.30090 0.86585 0.78393 0.79136 0.83844 1.20638 1.21174 1.19923 1.22525 1.03999 0.93381 0.81462 0.95021 0.93545 0.90231 0.94037 0.88439 0.88133 0.91401 0.87601 0.92376 0.81143 0.91300 0.92666 0.83868 0.92301 0.92419 0.93271 0.93115 0.92633 0.85729 0.93315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.45 10.79 101.05 1.09 1.54 16 2 O -0.38 -5.04 7.88 -58.87 -0.46 -5.51 16 3 C 0.05 0.60 4.69 37.16 0.17 0.78 16 4 C 0.11 1.30 3.48 -67.42 -0.23 1.06 16 5 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 6 C 0.06 0.61 6.22 37.31 0.23 0.84 16 7 O -0.39 -4.86 10.74 -35.23 -0.38 -5.24 16 8 C 0.05 0.63 6.97 37.10 0.26 0.89 16 9 C 0.01 0.20 6.47 -3.75 -0.02 0.17 16 10 N -0.58 -8.30 3.01 -165.50 -0.50 -8.80 16 11 C 0.53 8.69 7.10 -11.59 -0.08 8.61 16 12 O -0.50 -7.96 7.81 -18.14 -0.14 -8.10 16 13 C 0.50 9.81 7.65 -11.59 -0.09 9.72 16 14 O -0.51 -11.12 12.53 5.50 0.07 -11.05 16 15 N -0.56 -11.42 2.97 -173.27 -0.52 -11.93 16 16 C 0.05 0.90 6.17 -3.71 -0.02 0.88 16 17 C -0.13 -2.25 6.08 -26.61 -0.16 -2.41 16 18 C -0.11 -2.30 5.11 -26.69 -0.14 -2.44 16 19 C 0.04 1.02 2.25 -91.65 -0.21 0.81 16 20 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 21 C -0.52 -13.93 8.56 -34.44 -0.29 -14.23 16 22 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 23 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 24 N -0.88 -25.00 11.40 55.43 0.63 -24.37 16 25 Si 0.89 20.93 29.54 -169.99 -5.02 15.91 16 26 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 27 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 28 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 29 C 0.11 2.51 5.41 -3.71 -0.02 2.49 16 30 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.05 0.51 8.06 -51.93 -0.42 0.09 16 32 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.10 1.22 5.79 -50.05 -0.29 0.93 16 35 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.07 0.85 7.41 -51.93 -0.38 0.47 16 37 H 0.11 1.10 8.14 -51.93 -0.42 0.67 16 38 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.17 2.81 3.82 -56.57 -0.22 2.60 16 40 H 0.07 0.85 8.14 -51.92 -0.42 0.42 16 41 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.15 2.38 3.91 -54.40 -0.21 2.17 16 43 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 45 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 46 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 47 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 48 H 0.12 3.37 5.12 -51.93 -0.27 3.10 16 49 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 371.75 15.07 5.60 5.60 Total: -1.00 -29.73 371.75 -8.00 -37.72 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: -7.67 Total: 5.41 kcal Atomic # 6 Polarization: 9.96 SS G_CDS: 0.39 Total: 10.35 kcal Atomic # 7 Polarization: -44.73 SS G_CDS: -0.38 Total: -45.11 kcal Atomic # 8 Polarization: -28.97 SS G_CDS: -0.91 Total: -29.89 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -29.73 -8.00 -37.72 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335136656.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.531 kcal (2) G-P(sol) polarization free energy of solvation -29.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds