Wall clock time and date at job start Wed Apr 1 2020 00:03:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42899 * 113.99622 * 2 1 4 4 C 1.53003 * 109.46863 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.70572 * 181.81001 * 4 3 2 6 6 C 1.53296 * 109.68003 * 302.34075 * 4 3 2 7 7 O 1.42961 * 109.22133 * 172.02839 * 6 4 3 8 8 C 1.42958 * 114.16768 * 297.41678 * 7 6 4 9 9 C 1.52883 * 109.29742 * 62.44867 * 8 7 6 10 10 N 1.47147 * 109.68245 * 61.26856 * 4 3 2 11 11 C 1.34774 * 120.98455 * 9.72082 * 10 4 3 12 12 O 1.21346 * 119.99739 * 6.84000 * 11 10 4 13 13 C 1.49443 * 120.00118 * 186.84678 * 11 10 4 14 14 O 1.21350 * 120.00261 * 5.88707 * 13 11 10 15 15 N 1.34772 * 120.00255 * 185.89050 * 13 11 10 16 16 C 1.46928 * 120.63034 * 353.01033 * 15 13 11 17 17 C 1.53188 * 108.77531 * 233.61347 * 16 15 13 18 18 C 1.53044 * 109.31378 * 305.36099 * 17 16 15 19 19 C 1.53033 * 109.53663 * 61.36739 * 18 17 16 20 20 H 1.08995 * 109.50271 * 58.61869 * 19 18 17 21 21 C 1.50708 * 109.49958 * 178.68700 * 19 18 17 22 22 H 1.08002 * 119.99503 * 359.92935 * 21 19 18 23 23 C 1.37868 * 119.99866 * 179.97438 * 21 19 18 24 24 N 1.31510 * 120.00510 * 359.97438 * 23 21 19 25 25 Si 1.86810 * 119.99704 * 179.72082 * 23 21 19 26 26 H 1.48502 * 109.46897 * 89.99950 * 25 23 21 27 27 H 1.48501 * 109.47135 * 210.00123 * 25 23 21 28 28 H 1.48501 * 109.46756 * 330.00179 * 25 23 21 29 29 C 1.46930 * 120.60955 * 173.03569 * 15 13 11 30 30 H 1.08997 * 109.47283 * 300.00138 * 1 2 3 31 31 H 1.09006 * 109.47503 * 59.99944 * 1 2 3 32 32 H 1.09004 * 109.47435 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47419 * 60.00449 * 3 2 1 34 34 H 1.09005 * 109.47103 * 299.99885 * 3 2 1 35 35 H 1.09005 * 109.51271 * 291.94617 * 6 4 3 36 36 H 1.08991 * 109.51316 * 52.05378 * 6 4 3 37 37 H 1.08996 * 109.51617 * 182.50717 * 8 7 6 38 38 H 1.08995 * 109.51624 * 302.61024 * 8 7 6 39 39 H 1.08994 * 109.61992 * 188.11419 * 9 8 7 40 40 H 1.09010 * 109.52229 * 67.70081 * 9 8 7 41 41 H 1.08994 * 109.59044 * 113.82138 * 16 15 13 42 42 H 1.09004 * 109.69996 * 353.46832 * 16 15 13 43 43 H 1.09002 * 109.50097 * 185.41148 * 17 16 15 44 44 H 1.08995 * 109.53013 * 65.32986 * 17 16 15 45 45 H 1.09002 * 109.46017 * 301.34515 * 18 17 16 46 46 H 1.08996 * 109.46249 * 181.38878 * 18 17 16 47 47 H 0.97003 * 120.00038 * 179.97438 * 24 23 21 48 48 H 1.09006 * 109.61463 * 6.61570 * 29 15 13 49 49 H 1.09001 * 109.56416 * 246.19298 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 3.9827 2.1782 0.0318 6 6 3.9895 0.3740 1.2185 7 8 5.3902 0.1082 1.1118 8 6 5.7506 -0.6857 -0.0211 9 6 5.3852 0.0658 -1.3014 10 7 3.9763 0.4819 -1.2159 11 6 3.1141 0.2219 -2.2186 12 8 1.9890 0.6751 -2.1839 13 6 3.5436 -0.6245 -3.3729 14 8 4.6298 -1.1653 -3.3577 15 7 2.7246 -0.7872 -4.4308 16 6 1.3506 -0.2678 -4.4006 17 6 0.3851 -1.4073 -4.7412 18 6 0.7914 -2.0326 -6.0777 19 6 2.2026 -2.6133 -5.9630 20 1 2.2256 -3.3595 -5.1688 21 6 2.5894 -3.2571 -7.2695 22 1 1.8974 -3.2538 -8.0988 23 6 3.8260 -3.8512 -7.4059 24 7 4.6684 -3.8555 -6.3960 25 14 4.3024 -4.6561 -9.0229 26 1 4.9627 -3.6549 -9.8986 27 1 5.2389 -5.7783 -8.7603 28 1 3.0842 -5.1749 -9.6953 29 6 3.1892 -1.4879 -5.6358 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.6885 1.8464 0.8900 34 1 1.6884 1.8464 -0.8900 35 1 3.7953 0.9435 2.1274 36 1 3.4413 -0.5673 1.2546 37 1 6.8232 -0.8786 -0.0042 38 1 5.2101 -1.6316 0.0103 39 1 5.5231 -0.5888 -2.1620 40 1 6.0221 0.9447 -1.4023 41 1 1.2458 0.5315 -5.1342 42 1 1.1251 0.1173 -3.4061 43 1 -0.6290 -1.0147 -4.8166 44 1 0.4247 -2.1646 -3.9583 45 1 0.7749 -1.2693 -6.8556 46 1 0.0914 -2.8276 -6.3344 47 1 5.5383 -4.2738 -6.4918 48 1 4.1780 -1.9098 -5.4554 49 1 3.2350 -0.7881 -6.4702 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001335136656.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:03:41 Heat of formation + Delta-G solvation = -119.894610 kcal Electronic energy + Delta-G solvation = -32673.057195 eV Core-core repulsion = 28409.062821 eV Total energy + Delta-G solvation = -4263.994374 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.40012 -40.62733 -39.32581 -38.65969 -38.20535 -36.03219 -35.09004 -33.51579 -33.22799 -31.56561 -29.86273 -27.86704 -27.50498 -26.72833 -26.46009 -24.65279 -23.89885 -23.49976 -22.33504 -21.00881 -20.11704 -18.66597 -18.27314 -17.95813 -17.61363 -17.50465 -17.12490 -16.74989 -16.53999 -16.40550 -16.27145 -16.10570 -15.55050 -15.47415 -15.29089 -15.17301 -14.75448 -14.63664 -14.40459 -14.12363 -13.88458 -13.61250 -13.43895 -13.27485 -12.90769 -12.86790 -12.65937 -12.45850 -12.32225 -12.28380 -12.13024 -11.98478 -11.78839 -11.69785 -11.29859 -11.19853 -11.02027 -10.80758 -10.55818 -10.48194 -9.75532 -9.52969 -9.36662 -8.11156 -6.28181 0.37028 1.23497 1.42129 1.42875 1.53218 2.17472 2.33204 2.43149 2.80601 2.95719 3.13440 3.18556 3.65697 3.84827 3.97524 4.08147 4.14412 4.18314 4.23337 4.30846 4.37788 4.45075 4.58503 4.62122 4.66464 4.68596 4.71181 4.76008 4.77938 4.81696 4.86440 4.91754 4.97449 5.03749 5.14191 5.20086 5.23979 5.29135 5.36718 5.55610 5.61379 5.84868 5.92566 5.98684 6.06259 6.28377 6.36422 6.41911 6.76401 6.83756 7.02636 7.41744 8.92465 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.015469 B = 0.003701 C = 0.003146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.608539 B = 7563.216368 C = 8898.167416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.407 6.407 3 C 0.054 3.946 4 C 0.108 3.892 5 H 0.119 0.881 6 C 0.056 3.944 7 O -0.389 6.389 8 C 0.056 3.944 9 C 0.015 3.985 10 N -0.577 5.577 11 C 0.531 3.469 12 O -0.496 6.496 13 C 0.485 3.515 14 O -0.543 6.543 15 N -0.570 5.570 16 C 0.053 3.947 17 C -0.121 4.121 18 C -0.107 4.107 19 C 0.040 3.960 20 H -0.013 1.013 21 C -0.537 4.537 22 H 0.061 0.939 23 C 0.014 3.986 24 N -0.912 5.912 25 Si 0.958 3.042 26 H -0.273 1.273 27 H -0.286 1.286 28 H -0.266 1.266 29 C 0.120 3.880 30 H 0.054 0.946 31 H 0.042 0.958 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.086 0.914 35 H 0.134 0.866 36 H 0.050 0.950 37 H 0.127 0.873 38 H 0.041 0.959 39 H 0.145 0.855 40 H 0.087 0.913 41 H 0.069 0.931 42 H 0.158 0.842 43 H 0.098 0.902 44 H 0.044 0.956 45 H 0.057 0.943 46 H 0.051 0.949 47 H 0.262 0.738 48 H 0.087 0.913 49 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.114 13.410 15.379 21.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.326 6.326 3 C -0.022 4.022 4 C 0.007 3.993 5 H 0.136 0.864 6 C -0.021 4.021 7 O -0.308 6.308 8 C -0.021 4.021 9 C -0.106 4.106 10 N -0.310 5.310 11 C 0.314 3.686 12 O -0.375 6.375 13 C 0.269 3.731 14 O -0.424 6.424 15 N -0.301 5.301 16 C -0.067 4.067 17 C -0.159 4.159 18 C -0.144 4.144 19 C 0.021 3.979 20 H 0.005 0.995 21 C -0.576 4.576 22 H 0.079 0.921 23 C -0.186 4.186 24 N -0.551 5.551 25 Si 0.783 3.217 26 H -0.199 1.199 27 H -0.212 1.212 28 H -0.190 1.190 29 C -0.001 4.001 30 H 0.073 0.927 31 H 0.060 0.940 32 H 0.095 0.905 33 H 0.093 0.907 34 H 0.104 0.896 35 H 0.152 0.848 36 H 0.069 0.931 37 H 0.144 0.856 38 H 0.059 0.941 39 H 0.161 0.839 40 H 0.106 0.894 41 H 0.087 0.913 42 H 0.174 0.826 43 H 0.117 0.883 44 H 0.063 0.937 45 H 0.076 0.924 46 H 0.070 0.930 47 H 0.071 0.929 48 H 0.106 0.894 49 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -4.747 13.216 15.579 20.974 hybrid contribution 0.294 -0.863 -1.308 1.594 sum -4.453 12.353 14.271 19.393 Atomic orbital electron populations 1.22664 0.80002 1.02493 1.00451 1.87808 1.21023 1.28245 1.95547 1.22929 0.90180 0.86394 1.02681 1.22510 0.95433 0.97432 0.83967 0.86375 1.23077 0.81433 0.99840 0.97763 1.87917 1.24245 1.72321 1.46272 1.22875 1.02542 0.92584 0.84068 1.23797 0.79868 1.03042 1.03924 1.47951 1.10585 1.55843 1.16635 1.19725 0.85011 0.80655 0.83172 1.90187 1.19358 1.51401 1.76528 1.20678 0.85046 0.82897 0.84469 1.90303 1.23141 1.50200 1.78758 1.48496 1.14081 1.52876 1.14636 1.23327 0.78717 0.96132 1.08496 1.21858 0.99656 0.97548 0.96878 1.21555 0.96685 0.99298 0.96897 1.18882 0.91895 0.92064 0.95089 0.99528 1.21477 1.00875 1.36425 0.98806 0.92073 1.25847 0.96627 0.96370 0.99760 1.70052 1.08204 1.44709 1.32120 0.85563 0.78156 0.78125 0.79859 1.19894 1.21210 1.19030 1.21956 1.02053 0.93190 0.82916 0.92713 0.93953 0.90451 0.90695 0.89592 0.84801 0.93141 0.85561 0.94093 0.83909 0.89434 0.91271 0.82642 0.88350 0.93746 0.92447 0.93013 0.92926 0.89431 0.93690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.78 10.79 113.37 1.22 2.00 16 2 O -0.41 -10.05 7.88 -126.38 -1.00 -11.04 16 3 C 0.05 1.07 4.69 71.98 0.34 1.41 16 4 C 0.11 2.22 3.48 44.97 0.16 2.38 16 5 H 0.12 1.92 8.14 -2.39 -0.02 1.90 16 6 C 0.06 1.10 6.22 72.08 0.45 1.55 16 7 O -0.39 -8.96 10.74 -148.98 -1.60 -10.56 16 8 C 0.06 1.36 6.97 71.94 0.50 1.86 16 9 C 0.01 0.40 6.47 86.22 0.56 0.96 16 10 N -0.58 -15.92 3.01 -795.89 -2.40 -18.32 16 11 C 0.53 17.34 7.10 87.27 0.62 17.96 16 12 O -0.50 -15.02 7.81 19.37 0.15 -14.87 16 13 C 0.49 19.79 7.65 87.27 0.67 20.46 16 14 O -0.54 -24.90 12.53 -3.25 -0.04 -24.94 16 15 N -0.57 -23.80 2.97 -820.48 -2.44 -26.24 16 16 C 0.05 1.80 6.17 86.36 0.53 2.33 16 17 C -0.12 -4.07 6.08 30.67 0.19 -3.88 16 18 C -0.11 -4.32 5.11 30.62 0.16 -4.16 16 19 C 0.04 2.04 2.25 -11.46 -0.03 2.01 16 20 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 21 C -0.54 -29.56 8.56 25.60 0.22 -29.34 16 22 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 23 C 0.01 0.76 5.30 84.65 0.45 1.21 16 24 N -0.91 -54.11 11.40 21.44 0.24 -53.87 16 25 Si 0.96 43.70 29.54 68.60 2.03 45.72 16 26 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 27 H -0.29 -12.98 7.11 99.48 0.71 -12.28 16 28 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 29 C 0.12 5.97 5.41 86.36 0.47 6.44 16 30 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.04 0.84 8.06 -2.38 -0.02 0.82 16 32 H 0.08 1.50 8.14 -2.38 -0.02 1.48 16 33 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.09 1.91 5.79 -4.19 -0.02 1.89 16 35 H 0.13 1.75 8.14 -2.38 -0.02 1.73 16 36 H 0.05 1.19 7.41 -2.39 -0.02 1.17 16 37 H 0.13 2.48 8.14 -2.39 -0.02 2.47 16 38 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.14 4.92 3.82 -75.79 -0.29 4.63 16 40 H 0.09 2.04 8.14 -2.38 -0.02 2.02 16 41 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 42 H 0.16 4.94 3.91 -73.12 -0.29 4.65 16 43 H 0.10 2.56 8.14 -2.39 -0.02 2.54 16 44 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 45 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 46 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 47 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 48 H 0.09 5.04 5.12 -2.38 -0.01 5.03 16 49 H 0.04 2.20 8.14 -2.39 -0.02 2.18 16 Total: -1.00 -67.56 371.75 1.83 -65.73 By element: Atomic # 1 Polarization: 24.80 SS G_CDS: 0.39 Total: 25.19 kcal Atomic # 6 Polarization: 16.69 SS G_CDS: 6.50 Total: 23.19 kcal Atomic # 7 Polarization: -93.83 SS G_CDS: -4.59 Total: -98.42 kcal Atomic # 8 Polarization: -58.93 SS G_CDS: -2.49 Total: -61.41 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.72 kcal Total: -67.56 1.83 -65.73 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335136656.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.164 kcal (2) G-P(sol) polarization free energy of solvation -67.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds