Wall clock time and date at job start Tue Mar 31 2020 23:02:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42904 * 109.46540 * 2 1 4 4 C 1.42903 * 113.99194 * 180.02562 * 3 2 1 5 5 C 1.53006 * 109.46576 * 179.97438 * 4 3 2 6 6 O 1.42899 * 109.47075 * 65.00209 * 5 4 3 7 7 C 1.42898 * 114.00025 * 179.97438 * 6 5 4 8 8 H 1.09002 * 109.47259 * 330.00253 * 7 6 5 9 9 C 1.53002 * 109.47113 * 90.00268 * 7 6 5 10 10 C 1.50703 * 109.47171 * 210.00101 * 7 6 5 11 11 O 1.21212 * 119.99824 * 355.00307 * 10 7 6 12 12 O 1.34194 * 119.99928 * 175.00179 * 10 7 6 13 13 C 1.36189 * 116.99991 * 179.97438 * 12 10 7 14 14 C 1.40172 * 126.08228 * 269.69351 * 13 12 10 15 15 C 1.50693 * 125.89052 * 0.02562 * 14 13 12 16 16 N 1.30858 * 108.21917 * 179.85479 * 14 13 12 17 17 N 1.40067 * 108.30569 * 0.40031 * 16 14 13 18 18 C 1.46501 * 126.01859 * 179.77722 * 17 16 14 19 19 C 1.50700 * 109.47378 * 269.96349 * 18 17 16 20 20 H 1.08005 * 119.99927 * 359.97438 * 19 18 17 21 21 C 1.37878 * 120.00415 * 180.02562 * 19 18 17 22 22 N 1.31512 * 119.99583 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00133 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.46820 * 89.99403 * 23 21 19 25 25 H 1.48495 * 109.47207 * 209.99550 * 23 21 19 26 26 H 1.48501 * 109.47186 * 330.00016 * 23 21 19 27 27 C 1.35230 * 107.96408 * 359.74445 * 17 16 14 28 28 C 1.50703 * 126.16660 * 179.97438 * 27 17 16 29 29 H 1.09000 * 109.46750 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47172 * 299.99879 * 1 2 3 31 31 H 1.08995 * 109.47338 * 59.99921 * 1 2 3 32 32 H 1.08994 * 109.46814 * 239.99893 * 2 1 3 33 33 H 1.09000 * 109.46904 * 119.99493 * 2 1 3 34 34 H 1.09000 * 109.47612 * 60.00476 * 4 3 2 35 35 H 1.08996 * 109.47288 * 299.99690 * 4 3 2 36 36 H 1.09000 * 109.47373 * 305.00156 * 5 4 3 37 37 H 1.09007 * 109.46576 * 185.00035 * 5 4 3 38 38 H 1.09002 * 109.47075 * 59.99312 * 9 7 6 39 39 H 1.08996 * 109.47407 * 180.02562 * 9 7 6 40 40 H 1.09000 * 109.46986 * 300.00041 * 9 7 6 41 41 H 1.09007 * 109.47158 * 90.00362 * 15 14 13 42 42 H 1.09002 * 109.47397 * 210.00349 * 15 14 13 43 43 H 1.09001 * 109.47355 * 330.00581 * 15 14 13 44 44 H 1.09009 * 109.47192 * 29.95737 * 18 17 16 45 45 H 1.08996 * 109.47207 * 149.96172 * 18 17 16 46 46 H 0.97007 * 119.99639 * 180.02562 * 22 21 19 47 47 H 1.09002 * 109.47103 * 270.00176 * 28 27 17 48 48 H 1.09005 * 109.46991 * 30.00064 * 28 27 17 49 49 H 1.08994 * 109.47261 * 149.99304 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.4308 1.4601 -0.0006 5 6 3.8253 2.9385 -0.0012 6 8 3.3984 3.5458 1.2199 7 6 3.7202 4.9344 1.3219 8 1 4.6321 5.1383 0.7607 9 6 2.5718 5.7674 0.7489 10 6 3.9297 5.2965 2.7697 11 8 3.7268 4.4731 3.6358 12 8 4.3410 6.5304 3.0999 13 6 4.5101 6.7916 4.4258 14 6 3.5361 7.2960 5.2986 15 6 2.1165 7.6439 4.9322 16 7 4.0713 7.4093 6.4874 17 7 5.4056 6.9901 6.4109 18 6 6.3646 6.9619 7.5181 19 6 7.0932 8.2794 7.5853 20 1 6.8651 9.0595 6.8741 21 6 8.0518 8.4885 8.5540 22 7 8.3299 7.5383 9.4197 23 14 8.9554 10.1212 8.6368 24 1 8.2128 11.0536 9.5225 25 1 10.3205 9.9045 9.1795 26 1 9.0511 10.7037 7.2741 27 6 5.6526 6.6153 5.1353 28 6 6.9615 6.0959 4.5985 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.8333 0.9768 -0.8908 35 1 3.8340 0.9765 0.8891 36 1 3.3491 3.4413 -0.8429 37 1 4.9081 3.0255 -0.0912 38 1 1.6598 5.5634 1.3101 39 1 2.8173 6.8265 0.8263 40 1 2.4202 5.5055 -0.2982 41 1 1.4807 6.7693 5.0705 42 1 1.7643 8.4537 5.5711 43 1 2.0773 7.9603 3.8898 44 1 5.8333 6.7925 8.4548 45 1 7.0823 6.1576 7.3568 46 1 9.0041 7.6855 10.1015 47 1 7.5653 6.9308 4.2428 48 1 7.4966 5.5719 5.3905 49 1 6.7693 5.4092 3.7742 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001339231312.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:02:02 Heat of formation + Delta-G solvation = -103.991226 kcal Electronic energy + Delta-G solvation = -29890.285618 eV Core-core repulsion = 25626.980867 eV Total energy + Delta-G solvation = -4263.304751 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.23345 -39.90438 -38.76214 -37.73532 -36.20023 -34.01908 -32.70443 -32.59204 -31.50919 -30.70842 -29.16074 -29.07009 -26.70381 -25.98866 -24.85988 -23.09425 -23.03771 -22.69717 -21.41049 -19.41878 -19.20480 -17.67649 -17.43400 -17.16187 -16.95810 -16.64623 -16.07966 -15.61209 -15.41774 -14.96072 -14.85418 -14.46072 -14.30710 -13.90395 -13.65513 -13.26546 -13.03126 -12.96810 -12.96389 -12.76939 -12.57034 -12.50231 -12.45524 -12.06810 -12.02172 -11.85889 -11.72313 -11.69931 -11.55275 -11.52968 -11.21904 -11.05447 -10.94944 -10.80635 -10.35973 -10.29387 -9.94884 -9.88912 -9.78017 -9.69742 -8.68843 -8.36808 -7.70179 -6.30668 -4.38713 2.16314 2.34912 2.64262 3.19334 3.21951 3.25483 3.27481 3.33064 3.38527 3.81444 4.25811 4.53874 4.67465 4.72280 4.74321 4.83828 4.87134 4.90550 5.02071 5.03555 5.05405 5.09117 5.14047 5.28493 5.32342 5.42829 5.47416 5.48793 5.58313 5.60839 5.73501 5.81839 5.91123 5.92284 5.94288 6.10246 6.13522 6.26060 6.48229 6.62666 6.75663 6.91060 6.93247 6.99349 7.28063 7.59240 7.80445 7.82719 8.21165 8.43614 8.67218 9.27808 10.77137 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.019910 B = 0.002152 C = 0.002105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.960742 B =13005.218876 C =13296.160002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.057 3.943 3 O -0.381 6.381 4 C 0.065 3.935 5 C 0.062 3.938 6 O -0.351 6.351 7 C 0.103 3.897 8 H 0.097 0.903 9 C -0.168 4.168 10 C 0.436 3.564 11 O -0.473 6.473 12 O -0.250 6.250 13 C -0.105 4.105 14 C 0.061 3.939 15 C -0.067 4.067 16 N -0.280 5.280 17 N -0.313 5.313 18 C 0.257 3.743 19 C -0.539 4.539 20 H 0.066 0.934 21 C 0.066 3.934 22 N -0.890 5.890 23 Si 0.908 3.092 24 H -0.277 1.277 25 H -0.283 1.283 26 H -0.271 1.271 27 C 0.105 3.895 28 C -0.084 4.084 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.046 0.954 33 H 0.049 0.951 34 H 0.065 0.935 35 H 0.061 0.939 36 H 0.063 0.937 37 H 0.069 0.931 38 H 0.072 0.928 39 H 0.082 0.918 40 H 0.072 0.928 41 H 0.070 0.930 42 H 0.073 0.927 43 H 0.071 0.929 44 H 0.057 0.943 45 H 0.055 0.945 46 H 0.269 0.731 47 H 0.085 0.915 48 H 0.079 0.921 49 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.339 -10.535 -22.826 26.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.300 6.300 4 C -0.012 4.012 5 C -0.015 4.015 6 O -0.270 6.270 7 C 0.043 3.957 8 H 0.115 0.885 9 C -0.225 4.225 10 C 0.277 3.723 11 O -0.356 6.356 12 O -0.162 6.162 13 C -0.159 4.159 14 C -0.105 4.105 15 C -0.126 4.126 16 N -0.104 5.104 17 N -0.093 5.093 18 C 0.140 3.860 19 C -0.577 4.577 20 H 0.084 0.916 21 C -0.138 4.138 22 N -0.527 5.527 23 Si 0.735 3.265 24 H -0.202 1.202 25 H -0.208 1.208 26 H -0.196 1.196 27 C -0.029 4.029 28 C -0.142 4.142 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.083 0.917 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.087 0.913 38 H 0.091 0.909 39 H 0.101 0.899 40 H 0.091 0.909 41 H 0.089 0.911 42 H 0.092 0.908 43 H 0.090 0.910 44 H 0.075 0.925 45 H 0.073 0.927 46 H 0.079 0.921 47 H 0.103 0.897 48 H 0.098 0.902 49 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -9.591 -10.456 -20.870 25.236 hybrid contribution 1.082 0.354 -0.697 1.335 sum -8.509 -10.101 -21.567 25.290 Atomic orbital electron populations 1.21735 0.93688 1.02157 1.03284 1.22462 0.95775 0.83830 0.99938 1.87969 1.20379 1.26255 1.95392 1.22492 0.82388 0.95238 1.01065 1.22677 0.98528 0.92814 0.87450 1.88111 1.80005 1.20649 1.38187 1.21338 1.00195 0.83885 0.90252 0.88535 1.22206 0.98271 1.00307 1.01746 1.24159 0.74690 0.81783 0.91681 1.90787 1.44380 1.49627 1.50827 1.84676 1.77115 1.30967 1.23428 1.17587 0.94223 1.20017 0.84026 1.22263 0.96816 1.00807 0.90602 1.20070 0.89058 1.01843 1.01599 1.77384 0.91362 1.21989 1.19678 1.49170 1.08303 1.44313 1.07493 1.19811 0.84842 0.99079 0.82282 1.21283 1.20947 0.99188 1.16326 0.91607 1.24935 0.96425 0.97648 0.94742 1.69923 1.32692 1.32866 1.17269 0.86318 0.78717 0.82814 0.78628 1.20240 1.20843 1.19618 1.20885 0.96928 0.98554 0.86488 1.20349 0.91743 1.01184 1.00972 0.91184 0.91611 0.91940 0.93615 0.93287 0.91665 0.92114 0.91909 0.91337 0.90941 0.89910 0.90923 0.91137 0.90801 0.90967 0.92470 0.92701 0.92147 0.89657 0.90243 0.91362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 10.28 37.16 0.38 -0.68 16 2 C 0.06 0.45 6.66 37.16 0.25 0.69 16 3 O -0.38 -4.04 10.31 -40.09 -0.41 -4.46 16 4 C 0.06 0.55 6.32 37.16 0.23 0.78 16 5 C 0.06 0.53 6.13 37.16 0.23 0.76 16 6 O -0.35 -4.51 9.49 -59.70 -0.57 -5.07 16 7 C 0.10 1.19 3.24 -27.88 -0.09 1.10 16 8 H 0.10 0.82 7.79 -51.93 -0.40 0.42 16 9 C -0.17 -1.55 9.50 37.16 0.35 -1.20 16 10 C 0.44 7.12 7.24 36.01 0.26 7.39 16 11 O -0.47 -9.73 16.27 -25.77 -0.42 -10.15 16 12 O -0.25 -4.29 10.12 -24.26 -0.25 -4.53 16 13 C -0.10 -2.15 5.34 -39.79 -0.21 -2.36 16 14 C 0.06 1.27 7.23 -82.28 -0.59 0.67 16 15 C -0.07 -1.06 10.44 36.00 0.38 -0.68 16 16 N -0.28 -6.69 12.57 33.73 0.42 -6.27 16 17 N -0.31 -7.58 3.60 -58.16 -0.21 -7.79 16 18 C 0.26 6.65 6.00 -5.19 -0.03 6.62 16 19 C -0.54 -14.78 9.39 -34.44 -0.32 -15.10 16 20 H 0.07 1.85 7.81 -52.48 -0.41 1.44 16 21 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 22 N -0.89 -24.95 13.29 55.43 0.74 -24.21 16 23 Si 0.91 20.95 29.54 -169.99 -5.02 15.93 16 24 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 25 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 26 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 27 C 0.11 2.26 6.95 -82.02 -0.57 1.69 16 28 C -0.08 -1.48 10.09 36.01 0.36 -1.12 16 29 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 34 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.45 7.87 -51.93 -0.41 0.04 16 37 H 0.07 0.43 8.09 -51.92 -0.42 0.01 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 40 H 0.07 0.52 7.87 -51.93 -0.41 0.11 16 41 H 0.07 1.05 8.14 -51.92 -0.42 0.63 16 42 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 43 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.06 1.58 8.14 -51.92 -0.42 1.16 16 45 H 0.06 1.40 7.06 -51.93 -0.37 1.04 16 46 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 47 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 48 H 0.08 1.40 7.09 -51.93 -0.37 1.04 16 49 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 LS Contribution 420.79 15.07 6.34 6.34 Total: -1.00 -34.62 420.79 -7.11 -41.73 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: -8.26 Total: -1.79 kcal Atomic # 6 Polarization: -0.26 SS G_CDS: 0.53 Total: 0.27 kcal Atomic # 7 Polarization: -39.22 SS G_CDS: 0.95 Total: -38.26 kcal Atomic # 8 Polarization: -22.57 SS G_CDS: -1.64 Total: -24.22 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 6.34 Total: 6.34 kcal Total: -34.62 -7.11 -41.73 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339231312.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.257 kcal (2) G-P(sol) polarization free energy of solvation -34.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds