Wall clock time and date at job start Tue Mar 31 2020 23:17:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45199 * 109.47493 * 2 1 4 4 C 1.34225 * 117.00471 * 179.97438 * 3 2 1 5 5 O 1.20834 * 119.99436 * 359.97438 * 4 3 2 6 6 C 1.50700 * 120.00286 * 179.97438 * 4 3 2 7 7 C 1.52999 * 109.46867 * 185.69995 * 6 4 3 8 8 H 1.08996 * 109.88126 * 304.43409 * 7 6 4 9 9 C 1.54325 * 109.88214 * 65.45208 * 7 6 4 10 10 C 1.55160 * 102.94634 * 141.76069 * 9 7 6 11 11 C 1.54908 * 101.57797 * 324.49609 * 10 9 7 12 12 N 1.47031 * 110.00740 * 183.33095 * 7 6 4 13 13 C 1.34775 * 125.64652 * 61.53915 * 12 7 6 14 14 O 1.21347 * 119.99730 * 4.90175 * 13 12 7 15 15 C 1.49441 * 119.99977 * 184.90008 * 13 12 7 16 16 O 1.21350 * 119.99847 * 359.97438 * 15 13 12 17 17 N 1.34778 * 120.00346 * 180.02562 * 15 13 12 18 18 C 1.46494 * 120.00539 * 179.97438 * 17 15 13 19 19 C 1.53001 * 109.47383 * 179.97438 * 18 17 15 20 20 C 1.52995 * 109.47307 * 179.97438 * 19 18 17 21 21 C 1.50696 * 109.47399 * 180.02562 * 20 19 18 22 22 H 1.07999 * 120.00066 * 0.02562 * 21 20 19 23 23 C 1.37874 * 119.99979 * 180.02562 * 21 20 19 24 24 N 1.31511 * 120.00330 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 119.99860 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47315 * 59.99315 * 25 23 21 27 27 H 1.48503 * 109.47274 * 179.97438 * 25 23 21 28 28 H 1.48504 * 109.47062 * 299.99252 * 25 23 21 29 29 H 1.09000 * 109.47407 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47094 * 300.00493 * 1 2 3 31 31 H 1.09010 * 109.46441 * 60.00253 * 1 2 3 32 32 H 1.08998 * 109.47094 * 239.99507 * 2 1 3 33 33 H 1.09006 * 109.46660 * 120.00202 * 2 1 3 34 34 H 1.09000 * 109.46778 * 65.70414 * 6 4 3 35 35 H 1.08992 * 109.46713 * 305.70290 * 6 4 3 36 36 H 1.09002 * 110.72290 * 260.12303 * 9 7 6 37 37 H 1.09007 * 110.71854 * 23.39676 * 9 7 6 38 38 H 1.08996 * 111.00252 * 82.57199 * 10 9 7 39 39 H 1.08998 * 111.00316 * 206.42359 * 10 9 7 40 40 H 1.09002 * 110.37394 * 278.16862 * 11 10 9 41 41 H 1.08999 * 110.36641 * 155.84502 * 11 10 9 42 42 H 0.96999 * 119.99402 * 0.02562 * 17 15 13 43 43 H 1.09002 * 109.47293 * 300.00230 * 18 17 15 44 44 H 1.09004 * 109.47065 * 59.99971 * 18 17 15 45 45 H 1.08998 * 109.46969 * 300.00560 * 19 18 17 46 46 H 1.09004 * 109.46698 * 60.00169 * 19 18 17 47 47 H 1.09002 * 109.47334 * 300.00632 * 20 19 18 48 48 H 1.09007 * 109.46898 * 59.99928 * 20 19 18 49 49 H 0.97005 * 120.00415 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0808 0.5865 0.0015 6 6 3.9208 2.9374 0.0000 7 6 5.4422 2.8598 -0.1425 8 1 5.8567 2.2310 0.6454 9 6 5.8110 2.2808 -1.5246 10 6 7.0577 3.1117 -1.9282 11 6 6.7108 4.5004 -1.3359 12 7 6.0241 4.2078 -0.0646 13 6 5.9426 5.0386 0.9935 14 8 5.4265 4.6594 2.0242 15 6 6.4879 6.4266 0.8975 16 8 7.0044 6.8056 -0.1331 17 7 6.4069 7.2573 1.9558 18 6 6.9419 8.6178 1.8618 19 6 6.7232 9.3447 3.1903 20 6 7.2826 10.7654 3.0924 21 6 7.0678 11.4811 4.4010 22 1 6.5814 10.9734 5.2207 23 6 7.4923 12.7842 4.5518 24 7 8.0850 13.4024 3.5538 25 14 7.2267 13.6712 6.1742 26 1 7.9264 12.9380 7.2595 27 1 7.7695 15.0502 6.0791 28 1 5.7734 13.7304 6.4738 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3632 0.5139 -0.8901 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 3.6685 3.4352 0.9362 35 1 3.5059 3.5018 -0.8350 36 1 6.0618 1.2230 -1.4452 37 1 4.9991 2.4334 -2.2358 38 1 7.9612 2.7071 -1.4721 39 1 7.1586 3.1634 -3.0122 40 1 6.0479 5.0450 -2.0085 41 1 7.6202 5.0727 -1.1528 42 1 5.9949 6.9539 2.7799 43 1 8.0087 8.5744 1.6423 44 1 6.4285 9.1559 1.0649 45 1 5.6564 9.3881 3.4094 46 1 7.2363 8.8067 3.9875 47 1 8.3495 10.7216 2.8734 48 1 6.7699 11.3035 2.2950 49 1 8.3840 14.3191 3.6600 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346116350.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:17:13 Heat of formation + Delta-G solvation = -169.815356 kcal Electronic energy + Delta-G solvation = -29153.709921 eV Core-core repulsion = 24887.550822 eV Total energy + Delta-G solvation = -4266.159100 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.30064 -40.61481 -39.04603 -37.80728 -36.96858 -35.62177 -33.39023 -32.74414 -32.02119 -31.73537 -31.25612 -27.33731 -27.22131 -25.32549 -23.81541 -23.18131 -22.10004 -21.78586 -20.94889 -20.61039 -19.43257 -18.26290 -17.64721 -17.38444 -17.05814 -16.82154 -16.37793 -16.03569 -15.63627 -15.32116 -15.03351 -14.66914 -14.47304 -14.24468 -13.94166 -13.87899 -13.59200 -13.48402 -13.40509 -13.11779 -12.98757 -12.43318 -12.31625 -12.26801 -12.02899 -11.93317 -11.82853 -11.78857 -11.41052 -11.21748 -11.16182 -10.96766 -10.89960 -10.84999 -10.76967 -10.63689 -9.91171 -9.74510 -9.36262 -9.16904 -9.15036 -8.96202 -8.38425 -6.03332 -4.06465 1.35592 1.80910 1.96623 2.40091 3.16429 3.32046 3.36645 3.38523 3.43716 4.05238 4.09932 4.33693 4.35740 4.42804 4.45803 4.47141 4.51914 4.71987 4.79260 4.79664 4.90324 5.16102 5.19033 5.28298 5.30906 5.32570 5.43593 5.49537 5.53430 5.57246 5.58445 5.64458 5.67377 5.82758 5.88267 6.03851 6.06212 6.26262 6.52499 6.69010 6.91075 6.93839 7.24998 7.33968 7.60376 7.64905 7.72148 7.94669 8.02543 8.36021 8.99729 9.57900 11.07807 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.016903 B = 0.001787 C = 0.001649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1656.089578 B =15668.974438 C =16971.240370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.062 3.938 3 O -0.358 6.358 4 C 0.472 3.528 5 O -0.506 6.506 6 C -0.130 4.130 7 C 0.149 3.851 8 H 0.094 0.906 9 C -0.125 4.125 10 C -0.137 4.137 11 C 0.100 3.900 12 N -0.591 5.591 13 C 0.523 3.477 14 O -0.519 6.519 15 C 0.503 3.497 16 O -0.520 6.520 17 N -0.691 5.691 18 C 0.115 3.885 19 C -0.123 4.123 20 C 0.025 3.975 21 C -0.524 4.524 22 H 0.056 0.944 23 C 0.058 3.942 24 N -0.894 5.894 25 Si 0.894 3.106 26 H -0.277 1.277 27 H -0.287 1.287 28 H -0.277 1.277 29 H 0.080 0.920 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.120 0.880 35 H 0.109 0.891 36 H 0.093 0.907 37 H 0.075 0.925 38 H 0.079 0.921 39 H 0.088 0.912 40 H 0.076 0.924 41 H 0.101 0.899 42 H 0.411 0.589 43 H 0.071 0.929 44 H 0.071 0.929 45 H 0.057 0.943 46 H 0.057 0.943 47 H 0.020 0.980 48 H 0.020 0.980 49 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.313 -27.975 -13.050 32.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.012 4.012 3 O -0.275 6.275 4 C 0.315 3.685 5 O -0.394 6.394 6 C -0.169 4.169 7 C 0.046 3.954 8 H 0.112 0.888 9 C -0.163 4.163 10 C -0.175 4.175 11 C -0.022 4.022 12 N -0.325 5.325 13 C 0.306 3.694 14 O -0.395 6.395 15 C 0.283 3.717 16 O -0.397 6.397 17 N -0.343 5.343 18 C -0.007 4.007 19 C -0.161 4.161 20 C -0.013 4.013 21 C -0.562 4.562 22 H 0.074 0.926 23 C -0.144 4.144 24 N -0.533 5.533 25 Si 0.722 3.278 26 H -0.202 1.202 27 H -0.213 1.213 28 H -0.202 1.202 29 H 0.099 0.901 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.138 0.862 35 H 0.127 0.873 36 H 0.111 0.889 37 H 0.094 0.906 38 H 0.097 0.903 39 H 0.107 0.893 40 H 0.095 0.905 41 H 0.119 0.881 42 H 0.247 0.753 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.076 0.924 46 H 0.076 0.924 47 H 0.038 0.962 48 H 0.038 0.962 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -9.937 -27.955 -13.203 32.474 hybrid contribution -0.372 0.320 1.288 1.379 sum -10.309 -27.635 -11.915 31.811 Atomic orbital electron populations 1.21821 0.92486 1.03073 1.03705 1.23056 0.95495 0.79960 1.02686 1.86516 1.24416 1.32659 1.83913 1.23408 0.80659 0.92323 0.72135 1.90670 1.60302 1.43097 1.45328 1.21797 0.96060 0.91803 1.07211 1.21407 0.90510 0.83354 1.00153 0.88819 1.22752 0.98473 1.00958 0.94148 1.22892 0.98180 0.94634 1.01776 1.22649 0.98727 0.97104 0.83676 1.48336 1.53155 1.15548 1.15503 1.20130 0.80332 0.86259 0.82669 1.90759 1.43983 1.76460 1.28283 1.19849 0.81181 0.85915 0.84793 1.90730 1.43566 1.76380 1.29055 1.46068 1.58644 1.14357 1.15198 1.21845 0.99145 0.78947 1.00788 1.21931 1.01388 0.99327 0.93452 1.19026 0.96422 0.88320 0.97519 1.21162 1.38796 0.97676 0.98595 0.92623 1.25018 0.95145 0.97589 0.96641 1.69949 1.39808 1.12348 1.31157 0.86633 0.78506 0.78707 0.83996 1.20237 1.21269 1.20232 0.90135 0.91323 0.91409 0.91136 0.91102 0.86226 0.87282 0.88873 0.90587 0.90271 0.89318 0.90545 0.88078 0.75324 0.91076 0.91072 0.92423 0.92429 0.96195 0.96194 0.92863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.69 10.29 37.16 0.38 -0.31 16 2 C 0.06 0.41 6.19 37.16 0.23 0.64 16 3 O -0.36 -3.18 10.22 -39.24 -0.40 -3.58 16 4 C 0.47 4.46 7.66 36.01 0.28 4.73 16 5 O -0.51 -5.65 14.67 -18.76 -0.28 -5.92 16 6 C -0.13 -1.13 5.28 -27.88 -0.15 -1.27 16 7 C 0.15 1.37 2.50 -66.95 -0.17 1.20 16 8 H 0.09 0.99 7.91 -51.93 -0.41 0.58 16 9 C -0.13 -0.87 5.47 -24.89 -0.14 -1.01 16 10 C -0.14 -0.88 7.09 -24.58 -0.17 -1.05 16 11 C 0.10 0.90 5.89 -2.53 -0.01 0.89 16 12 N -0.59 -6.31 3.07 -163.52 -0.50 -6.81 16 13 C 0.52 6.89 7.65 -11.59 -0.09 6.80 16 14 O -0.52 -7.64 15.66 5.50 0.09 -7.55 16 15 C 0.50 7.33 7.85 -11.59 -0.09 7.24 16 16 O -0.52 -8.33 13.91 5.50 0.08 -8.25 16 17 N -0.69 -10.14 5.55 -60.73 -0.34 -10.48 16 18 C 0.11 1.92 5.67 -4.04 -0.02 1.90 16 19 C -0.12 -2.36 5.27 -26.73 -0.14 -2.50 16 20 C 0.02 0.62 4.97 -27.89 -0.14 0.48 16 21 C -0.52 -14.51 9.11 -34.44 -0.31 -14.83 16 22 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 23 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 24 N -0.89 -26.50 13.29 55.43 0.74 -25.77 16 25 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 26 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 27 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 28 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 29 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.07 0.30 8.14 -51.92 -0.42 -0.13 16 32 H 0.07 0.43 8.13 -51.93 -0.42 0.01 16 33 H 0.07 0.47 8.13 -51.93 -0.42 0.05 16 34 H 0.12 1.18 6.93 -51.93 -0.36 0.83 16 35 H 0.11 0.76 8.06 -51.93 -0.42 0.35 16 36 H 0.09 0.67 7.75 -51.93 -0.40 0.27 16 37 H 0.08 0.46 7.80 -51.93 -0.40 0.05 16 38 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.10 1.06 6.47 -51.93 -0.34 0.72 16 42 H 0.41 5.54 7.94 -40.82 -0.32 5.21 16 43 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 44 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 45 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 46 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 47 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 49 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 406.43 15.07 6.12 6.12 Total: -1.00 -32.61 406.43 -8.27 -40.88 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: -8.12 Total: 0.51 kcal Atomic # 6 Polarization: 5.10 SS G_CDS: -0.64 Total: 4.45 kcal Atomic # 7 Polarization: -42.95 SS G_CDS: -0.10 Total: -43.06 kcal Atomic # 8 Polarization: -24.79 SS G_CDS: -0.51 Total: -25.31 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -32.61 -8.27 -40.88 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346116350.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.934 kcal (2) G-P(sol) polarization free energy of solvation -32.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds