Wall clock time and date at job start Wed Apr 1 2020 00:15:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34234 * 116.99938 * 2 1 4 4 O 1.20822 * 119.99973 * 0.02562 * 3 2 1 5 5 C 1.50700 * 120.00068 * 179.97438 * 3 2 1 6 6 C 1.53003 * 109.46986 * 300.00240 * 5 3 2 7 7 C 1.53005 * 109.47219 * 180.02562 * 6 5 3 8 8 C 1.52994 * 109.46906 * 59.99762 * 7 6 5 9 9 N 1.46499 * 109.46900 * 180.02562 * 8 7 6 10 10 C 1.34774 * 120.00098 * 274.99963 * 9 8 7 11 11 O 1.21346 * 120.00020 * 359.97438 * 10 9 8 12 12 C 1.49454 * 119.99872 * 179.97438 * 10 9 8 13 13 O 1.21349 * 120.00302 * 0.02562 * 12 10 9 14 14 N 1.34783 * 119.99662 * 179.97438 * 12 10 9 15 15 C 1.46499 * 119.99889 * 180.02562 * 14 12 10 16 16 C 1.53001 * 109.47277 * 180.02562 * 15 14 12 17 17 C 1.53000 * 109.47096 * 179.97438 * 16 15 14 18 18 C 1.50696 * 109.47018 * 179.97438 * 17 16 15 19 19 H 1.08005 * 119.99924 * 0.02562 * 18 17 16 20 20 C 1.37876 * 120.00161 * 180.02562 * 18 17 16 21 21 N 1.31514 * 120.00004 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00051 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47392 * 0.02562 * 22 20 18 24 24 H 1.48511 * 109.47178 * 119.99688 * 22 20 18 25 25 H 1.48497 * 109.47554 * 239.99548 * 22 20 18 26 26 C 1.52998 * 109.47366 * 299.99803 * 8 7 6 27 27 C 1.52992 * 109.47257 * 180.02562 * 5 3 2 28 28 H 1.08996 * 109.47465 * 299.99911 * 1 2 3 29 29 H 1.08999 * 109.47008 * 59.99921 * 1 2 3 30 30 H 1.09006 * 109.46832 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47392 * 59.99712 * 5 3 2 32 32 H 1.09005 * 109.46932 * 299.99942 * 6 5 3 33 33 H 1.08998 * 109.47453 * 59.99968 * 6 5 3 34 34 H 1.09000 * 109.46608 * 299.99989 * 7 6 5 35 35 H 1.08999 * 109.46783 * 179.97438 * 7 6 5 36 36 H 1.08992 * 109.47456 * 60.00368 * 8 7 6 37 37 H 0.97004 * 119.99803 * 94.99884 * 9 8 7 38 38 H 0.96996 * 120.00011 * 0.02562 * 14 12 10 39 39 H 1.09005 * 109.46777 * 300.00229 * 15 14 12 40 40 H 1.09004 * 109.47503 * 59.99700 * 15 14 12 41 41 H 1.08995 * 109.46954 * 300.00156 * 16 15 14 42 42 H 1.09001 * 109.46857 * 60.00125 * 16 15 14 43 43 H 1.08995 * 109.47631 * 300.00090 * 17 16 15 44 44 H 1.09005 * 109.46802 * 59.99985 * 17 16 15 45 45 H 0.96996 * 120.00152 * 180.02562 * 21 20 18 46 46 H 1.09000 * 109.47603 * 300.00663 * 26 8 7 47 47 H 1.08998 * 109.47444 * 180.02562 * 26 8 7 48 48 H 1.09004 * 109.47330 * 299.99977 * 27 5 3 49 49 H 1.09005 * 109.47124 * 59.99773 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.1128 0.5816 1.2502 7 6 5.6408 0.6622 1.2512 8 6 6.0740 2.1295 1.2514 9 7 7.5369 2.2068 1.2517 10 6 8.2150 2.1406 2.4145 11 8 7.6137 2.0175 3.4613 12 6 9.7075 2.2188 2.4147 13 8 10.3088 2.3423 1.3680 14 7 10.3855 2.1531 3.5778 15 6 11.8485 2.2303 3.5781 16 6 12.3641 2.1316 5.0152 17 6 13.8921 2.2116 5.0154 18 6 14.3999 2.1149 6.4309 19 1 13.7026 2.0068 7.2486 20 6 15.7547 2.1645 6.6822 21 7 16.6038 2.2957 5.6865 22 14 16.3842 2.0440 8.4368 23 1 15.2349 1.9011 9.3664 24 1 17.2728 0.8609 8.5637 25 1 17.1454 3.2733 8.7752 26 6 5.5275 2.8229 0.0018 27 6 4.0001 2.7421 0.0011 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.9564 0.7806 -0.8891 32 1 3.7227 1.0759 2.1399 33 1 3.8038 -0.4637 1.2503 34 1 6.0312 0.1682 0.3614 35 1 6.0300 0.1686 2.1416 36 1 5.6836 2.6235 2.1410 37 1 8.0176 2.3055 0.4149 38 1 9.9049 2.0548 4.4145 39 1 12.2558 1.4086 2.9889 40 1 12.1624 3.1794 3.1434 41 1 11.9568 2.9530 5.6046 42 1 12.0503 1.1823 5.4493 43 1 14.2991 1.3899 4.4261 44 1 14.2062 3.1607 4.5810 45 1 17.5569 2.3302 5.8632 46 1 5.9179 2.3289 -0.8880 47 1 5.8365 3.8681 0.0017 48 1 3.6107 3.2365 -0.8889 49 1 3.6100 3.2360 0.8911 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001346116881.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:15:54 Heat of formation + Delta-G solvation = -213.031240 kcal Electronic energy + Delta-G solvation = -28555.460264 eV Core-core repulsion = 24287.427183 eV Total energy + Delta-G solvation = -4268.033081 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.95432 -41.59617 -40.05157 -38.87743 -37.52205 -37.15075 -35.59074 -35.03945 -33.02989 -31.88494 -31.33973 -29.01623 -28.51467 -26.40606 -24.90310 -23.81075 -23.62721 -22.35732 -21.87842 -21.43190 -20.78033 -19.43965 -18.59180 -18.51016 -17.96913 -17.78512 -17.45284 -17.13573 -16.86340 -16.53713 -16.27432 -16.12132 -15.48019 -15.23288 -15.00100 -14.93533 -14.70865 -14.28852 -14.23179 -13.95679 -13.76580 -13.67646 -13.48861 -13.27490 -13.01269 -12.89639 -12.78025 -12.62337 -12.53241 -12.37237 -12.36289 -12.15789 -11.81561 -11.69573 -11.56635 -11.55307 -11.45365 -11.31280 -11.20772 -10.66118 -10.54730 -10.31044 -10.21654 -8.19021 -6.29720 0.32949 1.13007 1.29301 1.42055 1.42918 1.55652 1.75308 2.12764 2.42128 2.62824 3.15183 3.40234 3.51500 3.60427 3.72149 3.92986 4.08090 4.09560 4.19368 4.21529 4.30477 4.30979 4.31988 4.34880 4.46100 4.53689 4.61356 4.71131 4.80161 4.88268 4.92106 4.92677 5.07620 5.11070 5.12862 5.15884 5.19608 5.24549 5.27078 5.36625 5.42490 5.52674 5.71748 5.85341 5.92646 6.23921 6.36116 6.69046 6.73628 6.87474 6.93732 7.39804 8.93073 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.034327 B = 0.001428 C = 0.001396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.493440 B =19608.093636 C =20051.081975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.362 6.362 3 C 0.465 3.535 4 O -0.539 6.539 5 C -0.077 4.077 6 C -0.100 4.100 7 C -0.124 4.124 8 C 0.137 3.863 9 N -0.683 5.683 10 C 0.516 3.484 11 O -0.540 6.540 12 C 0.500 3.500 13 O -0.547 6.547 14 N -0.688 5.688 15 C 0.127 3.873 16 C -0.106 4.106 17 C 0.024 3.976 18 C -0.542 4.542 19 H 0.064 0.936 20 C 0.000 4.000 21 N -0.933 5.933 22 Si 0.964 3.036 23 H -0.261 1.261 24 H -0.280 1.280 25 H -0.280 1.280 26 C -0.117 4.117 27 C -0.096 4.096 28 H 0.059 0.941 29 H 0.062 0.938 30 H 0.129 0.871 31 H 0.137 0.863 32 H 0.062 0.938 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.060 0.940 36 H 0.079 0.921 37 H 0.421 0.579 38 H 0.419 0.581 39 H 0.065 0.935 40 H 0.064 0.936 41 H 0.066 0.934 42 H 0.067 0.933 43 H -0.003 1.003 44 H -0.004 1.004 45 H 0.263 0.737 46 H 0.097 0.903 47 H 0.083 0.917 48 H 0.082 0.918 49 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.821 -4.423 -15.321 36.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.278 6.278 3 C 0.309 3.691 4 O -0.429 6.429 5 C -0.095 4.095 6 C -0.138 4.138 7 C -0.163 4.163 8 C 0.034 3.966 9 N -0.335 5.335 10 C 0.296 3.704 11 O -0.417 6.417 12 C 0.281 3.719 13 O -0.426 6.426 14 N -0.340 5.340 15 C 0.004 3.996 16 C -0.144 4.144 17 C -0.013 4.013 18 C -0.580 4.580 19 H 0.082 0.918 20 C -0.198 4.198 21 N -0.573 5.573 22 Si 0.789 3.211 23 H -0.185 1.185 24 H -0.205 1.205 25 H -0.206 1.206 26 C -0.155 4.155 27 C -0.134 4.134 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.147 0.853 31 H 0.155 0.845 32 H 0.081 0.919 33 H 0.110 0.890 34 H 0.108 0.892 35 H 0.079 0.921 36 H 0.097 0.903 37 H 0.259 0.741 38 H 0.256 0.744 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.085 0.915 42 H 0.085 0.915 43 H 0.015 0.985 44 H 0.015 0.985 45 H 0.072 0.928 46 H 0.115 0.885 47 H 0.102 0.898 48 H 0.101 0.899 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -32.883 -4.124 -15.351 36.523 hybrid contribution 0.546 0.171 0.872 1.043 sum -32.338 -3.953 -14.479 35.651 Atomic orbital electron populations 1.23519 0.75134 1.05582 1.02383 1.86513 1.24701 1.33078 1.83557 1.24273 0.92853 0.81010 0.70947 1.90667 1.68087 1.37416 1.46715 1.21254 0.85302 0.99725 1.03252 1.21422 0.94769 1.01954 0.95691 1.21885 0.95259 0.95478 1.03630 1.21321 0.77313 0.97328 1.00659 1.45816 1.08054 1.70907 1.08766 1.19925 0.87566 0.77871 0.85042 1.90762 1.70022 1.48873 1.32024 1.20398 0.88893 0.78202 0.84409 1.90750 1.70651 1.49353 1.31799 1.45896 1.08075 1.70500 1.09513 1.21470 0.77542 1.01914 0.98653 1.21642 0.96899 1.02144 0.93740 1.18941 0.91042 0.95457 0.95905 1.21713 0.92372 1.49823 0.94077 0.91813 1.25955 0.97466 0.94809 1.01557 1.70099 1.02682 1.51341 1.33191 0.85411 0.78453 0.77664 0.79576 1.18472 1.20543 1.20564 1.21766 0.94640 1.02065 0.96989 1.21333 0.94804 0.93410 1.03868 0.92267 0.91939 0.85299 0.84519 0.91922 0.89040 0.89204 0.92115 0.90309 0.74135 0.74391 0.91681 0.91752 0.91530 0.91469 0.98458 0.98514 0.92804 0.88482 0.89846 0.89902 0.91873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 10.56 113.37 1.20 1.42 16 2 O -0.36 -4.51 10.47 -51.46 -0.54 -5.05 16 3 C 0.46 6.57 7.26 71.24 0.52 7.09 16 4 O -0.54 -10.99 15.73 21.98 0.35 -10.64 16 5 C -0.08 -0.66 2.63 -11.54 -0.03 -0.69 16 6 C -0.10 -0.93 5.14 30.60 0.16 -0.78 16 7 C -0.12 -1.35 5.49 30.59 0.17 -1.18 16 8 C 0.14 1.73 2.45 44.99 0.11 1.84 16 9 N -0.68 -11.07 5.07 -443.89 -2.25 -13.32 16 10 C 0.52 12.07 7.85 87.27 0.69 12.75 16 11 O -0.54 -14.74 16.14 -3.23 -0.05 -14.79 16 12 C 0.50 13.90 7.89 87.27 0.69 14.59 16 13 O -0.55 -17.44 16.48 -3.24 -0.05 -17.49 16 14 N -0.69 -19.51 5.55 -464.39 -2.58 -22.08 16 15 C 0.13 4.26 5.67 86.38 0.49 4.75 16 16 C -0.11 -4.04 5.27 30.59 0.16 -3.88 16 17 C 0.02 1.23 4.97 29.85 0.15 1.38 16 18 C -0.54 -30.06 9.11 25.60 0.23 -29.82 16 19 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16 20 C 0.00 0.00 5.46 84.65 0.46 0.46 16 21 N -0.93 -56.20 13.29 21.45 0.28 -55.92 16 22 Si 0.96 43.70 29.54 68.60 2.03 45.73 16 23 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 24 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 25 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 26 C -0.12 -0.89 5.39 30.58 0.16 -0.72 16 27 C -0.10 -0.89 4.49 30.58 0.14 -0.75 16 28 H 0.06 0.54 8.13 -2.39 -0.02 0.52 16 29 H 0.06 0.52 8.13 -2.39 -0.02 0.50 16 30 H 0.13 0.31 8.14 -2.38 -0.02 0.30 16 31 H 0.14 0.56 8.14 -2.39 -0.02 0.55 16 32 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 33 H 0.09 0.73 8.11 -2.39 -0.02 0.71 16 34 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.08 1.30 7.58 -2.39 -0.02 1.28 16 37 H 0.42 5.70 8.07 -92.70 -0.75 4.95 16 38 H 0.42 10.69 7.94 -92.71 -0.74 9.96 16 39 H 0.06 2.27 8.14 -2.38 -0.02 2.25 16 40 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 41 H 0.07 2.41 8.14 -2.39 -0.02 2.40 16 42 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 43 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 44 H 0.00 -0.19 8.14 -2.38 -0.02 -0.21 16 45 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 46 H 0.10 0.38 8.14 -2.39 -0.02 0.36 16 47 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 48 H 0.08 0.76 8.10 -2.38 -0.02 0.75 16 49 H 0.06 0.78 8.10 -2.38 -0.02 0.77 16 Total: -1.00 -73.11 409.28 1.95 -71.16 By element: Atomic # 1 Polarization: 16.49 SS G_CDS: -0.52 Total: 15.97 kcal Atomic # 6 Polarization: 1.16 SS G_CDS: 5.29 Total: 6.45 kcal Atomic # 7 Polarization: -86.78 SS G_CDS: -4.54 Total: -91.33 kcal Atomic # 8 Polarization: -47.68 SS G_CDS: -0.30 Total: -47.98 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Total: -73.11 1.95 -71.16 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346116881.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.869 kcal (2) G-P(sol) polarization free energy of solvation -73.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -214.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -213.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds