Wall clock time and date at job start Wed Apr 1 2020 00:03:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42902 * 114.00223 * 2 1 4 4 C 1.52996 * 109.47333 * 180.02562 * 3 2 1 5 5 H 1.08998 * 109.51173 * 304.90088 * 4 3 2 6 6 C 1.52877 * 109.58232 * 184.87913 * 4 3 2 7 7 N 1.47150 * 108.60690 * 187.92319 * 6 4 3 8 8 C 1.34784 * 120.97958 * 230.50139 * 7 6 4 9 9 O 1.21350 * 119.99993 * 4.78010 * 8 7 6 10 10 C 1.49452 * 119.99672 * 184.77647 * 8 7 6 11 11 O 1.21348 * 120.00226 * 85.42169 * 10 8 7 12 12 N 1.34783 * 119.99931 * 265.41794 * 10 8 7 13 13 C 1.46920 * 120.62733 * 174.95056 * 12 10 8 14 14 C 1.53195 * 108.89217 * 126.46310 * 13 12 10 15 15 C 1.53043 * 109.31135 * 54.56132 * 14 13 12 16 16 C 1.53033 * 109.53736 * 298.63601 * 15 14 13 17 17 H 1.08998 * 109.49804 * 301.37990 * 16 15 14 18 18 C 1.50707 * 109.49590 * 181.31755 * 16 15 14 19 19 H 1.07992 * 119.99950 * 359.97438 * 18 16 15 20 20 C 1.37881 * 119.99860 * 180.02562 * 18 16 15 21 21 N 1.31513 * 119.99977 * 359.97438 * 20 18 16 22 22 Si 1.86802 * 119.99827 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47039 * 359.97438 * 22 20 18 24 24 H 1.48495 * 109.46905 * 119.99767 * 22 20 18 25 25 H 1.48498 * 109.46764 * 239.99962 * 22 20 18 26 26 C 1.46959 * 120.65390 * 354.76761 * 12 10 8 27 27 C 1.47149 * 118.04049 * 50.22760 * 7 6 4 28 28 C 1.53302 * 108.38253 * 309.71959 * 27 7 6 29 29 O 1.42955 * 109.22304 * 52.29678 * 28 27 7 30 30 H 1.08998 * 109.47285 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47270 * 300.00003 * 1 2 3 32 32 H 1.09002 * 109.47283 * 60.00285 * 1 2 3 33 33 H 1.08997 * 109.47077 * 59.99277 * 3 2 1 34 34 H 1.09005 * 109.46713 * 300.00205 * 3 2 1 35 35 H 1.08997 * 109.61790 * 68.10170 * 6 4 3 36 36 H 1.08998 * 109.52503 * 307.68482 * 6 4 3 37 37 H 1.09001 * 109.58899 * 6.60492 * 13 12 10 38 38 H 1.09005 * 109.58639 * 246.32172 * 13 12 10 39 39 H 1.09003 * 109.49879 * 174.51255 * 14 13 12 40 40 H 1.08999 * 109.49804 * 294.57533 * 14 13 12 41 41 H 1.09006 * 109.45559 * 58.65639 * 15 14 13 42 42 H 1.08998 * 109.45794 * 178.62359 * 15 14 13 43 43 H 0.96999 * 119.99664 * 180.02562 * 21 20 18 44 44 H 1.09003 * 109.46336 * 113.74945 * 26 12 10 45 45 H 1.08997 * 109.71187 * 353.46888 * 26 12 10 46 46 H 1.09001 * 109.68202 * 69.43634 * 27 7 6 47 47 H 1.08991 * 109.68662 * 189.95592 * 27 7 6 48 48 H 1.08994 * 109.51187 * 172.22654 * 28 27 7 49 49 H 1.09001 * 109.50860 * 292.37594 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 1 3.8523 0.5698 0.8417 6 6 4.1596 2.5748 0.1219 7 7 5.6134 2.4555 -0.0720 8 6 6.4776 2.9995 0.8077 9 8 6.0630 3.5226 1.8211 10 6 7.9464 2.9582 0.5350 11 8 8.4610 3.8184 -0.1489 12 7 8.6996 1.9655 1.0488 13 6 10.1221 1.8484 0.7007 14 6 10.9456 1.7916 1.9913 15 6 10.4202 0.6599 2.8775 16 6 8.9609 0.9349 3.2473 17 1 8.8911 1.8910 3.7661 18 6 8.4543 -0.1634 4.1464 19 1 9.1075 -0.9767 4.4259 20 6 7.1566 -0.1303 4.6112 21 7 6.3611 0.8599 4.2703 22 14 6.5285 -1.4921 5.7250 23 1 7.6116 -2.4812 5.9566 24 1 6.1013 -0.9119 7.0234 25 1 5.3732 -2.1658 5.0797 26 6 8.1150 0.9820 1.9711 27 6 6.0959 1.7196 -1.2514 28 6 5.3773 0.3664 -1.3042 29 8 3.9661 0.5794 -1.2222 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.6886 1.8464 0.8899 34 1 1.6886 1.8464 -0.8900 35 1 3.9534 2.9826 1.1114 36 1 3.7402 3.2309 -0.6408 37 1 10.4264 2.7130 0.1108 38 1 10.2834 0.9375 0.1240 39 1 11.9919 1.6069 1.7474 40 1 10.8575 2.7401 2.5210 41 1 10.4862 -0.2847 2.3375 42 1 11.0201 0.6016 3.7857 43 1 5.4483 0.8833 4.5976 44 1 8.1105 -0.0006 1.4992 45 1 7.0943 1.2725 2.2197 46 1 5.8747 2.2881 -2.1547 47 1 7.1713 1.5619 -1.1712 48 1 5.6158 -0.1361 -2.2415 49 1 5.7016 -0.2509 -0.4665 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001346939309.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:03:03 Heat of formation + Delta-G solvation = -172.239748 kcal Electronic energy + Delta-G solvation = -32255.888193 eV Core-core repulsion = 27989.623964 eV Total energy + Delta-G solvation = -4266.264229 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.18630 -40.69049 -39.48125 -38.52362 -38.45436 -35.99234 -35.17518 -33.84007 -33.48422 -31.69956 -29.81447 -28.70247 -27.21988 -27.00543 -26.13313 -24.76603 -24.15646 -23.17316 -22.20757 -21.15909 -19.83585 -19.01873 -18.42839 -18.22302 -17.90212 -17.67315 -17.26373 -16.72811 -16.56216 -16.31799 -16.02729 -15.98904 -15.88686 -15.67446 -15.30490 -15.14816 -14.72208 -14.64986 -14.53080 -14.23003 -13.90762 -13.56314 -13.54440 -13.23318 -12.93999 -12.85095 -12.81779 -12.67735 -12.50943 -12.34159 -12.26637 -12.08555 -11.85547 -11.78494 -11.71055 -11.32154 -11.14585 -10.93393 -10.67533 -10.65956 -10.54173 -9.83758 -9.68079 -8.11126 -6.27133 0.94642 0.97517 1.38813 1.42771 1.46588 1.52655 2.20342 2.41673 2.53671 2.74867 3.03713 3.20263 3.64194 3.75856 3.89535 3.91533 4.04474 4.08834 4.10329 4.18304 4.23624 4.29357 4.40604 4.47249 4.51764 4.54558 4.56804 4.59599 4.65655 4.70569 4.73710 4.79280 4.83701 4.86422 4.99893 5.09136 5.10727 5.17080 5.23282 5.46272 5.55059 5.79389 5.85498 5.91659 5.98062 6.10680 6.20009 6.32000 6.64380 6.70013 6.84527 7.42562 8.91329 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.008960 B = 0.004986 C = 0.003589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3124.397118 B = 5614.243922 C = 7799.880637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.413 6.413 3 C 0.076 3.924 4 C 0.084 3.916 5 H 0.045 0.955 6 C 0.089 3.911 7 N -0.600 5.600 8 C 0.518 3.482 9 O -0.535 6.535 10 C 0.514 3.486 11 O -0.556 6.556 12 N -0.583 5.583 13 C 0.106 3.894 14 C -0.126 4.126 15 C -0.105 4.105 16 C 0.036 3.964 17 H -0.016 1.016 18 C -0.532 4.532 19 H 0.063 0.937 20 C 0.018 3.982 21 N -0.904 5.904 22 Si 0.949 3.051 23 H -0.262 1.262 24 H -0.288 1.288 25 H -0.282 1.282 26 C 0.116 3.884 27 C 0.072 3.928 28 C 0.051 3.949 29 O -0.371 6.371 30 H 0.094 0.906 31 H 0.050 0.950 32 H 0.057 0.943 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.089 0.911 36 H 0.109 0.891 37 H 0.090 0.910 38 H 0.100 0.900 39 H 0.106 0.894 40 H 0.041 0.959 41 H 0.068 0.932 42 H 0.053 0.947 43 H 0.259 0.741 44 H 0.060 0.940 45 H 0.086 0.914 46 H 0.108 0.892 47 H 0.088 0.912 48 H 0.146 0.854 49 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.237 -1.922 -14.126 15.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.333 6.333 3 C -0.001 4.001 4 C 0.025 3.975 5 H 0.063 0.937 6 C -0.033 4.033 7 N -0.335 5.335 8 C 0.301 3.699 9 O -0.410 6.410 10 C 0.297 3.703 11 O -0.435 6.435 12 N -0.315 5.315 13 C -0.015 4.015 14 C -0.164 4.164 15 C -0.143 4.143 16 C 0.017 3.983 17 H 0.002 0.998 18 C -0.570 4.570 19 H 0.081 0.919 20 C -0.182 4.182 21 N -0.542 5.542 22 Si 0.775 3.225 23 H -0.186 1.186 24 H -0.214 1.214 25 H -0.208 1.208 26 C -0.005 4.005 27 C -0.050 4.050 28 C -0.026 4.026 29 O -0.290 6.290 30 H 0.112 0.888 31 H 0.068 0.932 32 H 0.076 0.924 33 H 0.098 0.902 34 H 0.100 0.900 35 H 0.108 0.892 36 H 0.127 0.873 37 H 0.108 0.892 38 H 0.118 0.882 39 H 0.124 0.876 40 H 0.060 0.940 41 H 0.086 0.914 42 H 0.072 0.928 43 H 0.068 0.932 44 H 0.078 0.922 45 H 0.104 0.896 46 H 0.126 0.874 47 H 0.106 0.894 48 H 0.164 0.836 49 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -5.363 -1.361 -14.049 15.100 hybrid contribution -0.522 -0.077 1.522 1.611 sum -5.885 -1.438 -12.527 13.915 Atomic orbital electron populations 1.22947 0.79083 1.03860 1.01117 1.87901 1.21786 1.27928 1.95658 1.22451 0.89344 0.85523 1.02780 1.22271 0.94794 0.92615 0.87778 0.93731 1.22192 0.78526 0.97750 1.04815 1.48071 1.06512 1.53754 1.25196 1.20398 0.87711 0.78912 0.82865 1.90817 1.78496 1.45428 1.26294 1.20147 0.87678 0.82304 0.80160 1.90692 1.73362 1.38206 1.41270 1.48644 1.11536 1.27095 1.44261 1.21946 0.77871 1.03903 0.97808 1.21912 1.00434 0.98619 0.95472 1.21537 0.95885 0.98008 0.98829 1.18904 0.92381 0.95155 0.91840 0.99796 1.21441 0.97181 1.08768 1.29651 0.91864 1.25764 0.97457 0.97588 0.97424 1.70049 1.06973 1.31860 1.45298 0.85640 0.78451 0.79783 0.78628 1.18616 1.21381 1.20751 1.22154 1.00107 0.89224 0.89041 1.22724 1.00085 0.94226 0.87931 1.23115 0.80388 0.94478 1.04599 1.87975 1.22794 1.81182 1.37000 0.88778 0.93167 0.92432 0.90226 0.89986 0.89216 0.87291 0.89168 0.88186 0.87559 0.94035 0.91378 0.92815 0.93227 0.92162 0.89571 0.87435 0.89358 0.83641 0.93814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 11.01 113.37 1.25 1.68 16 2 O -0.41 -10.69 10.67 -144.45 -1.54 -12.23 16 3 C 0.08 1.71 5.60 71.98 0.40 2.11 16 4 C 0.08 2.36 3.05 30.55 0.09 2.46 16 5 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 6 C 0.09 2.56 5.92 86.21 0.51 3.07 16 7 N -0.60 -19.86 3.03 -819.73 -2.48 -22.34 16 8 C 0.52 21.98 5.63 87.27 0.49 22.47 16 9 O -0.54 -27.10 16.36 -3.25 -0.05 -27.15 16 10 C 0.51 21.41 5.55 87.27 0.48 21.89 16 11 O -0.56 -23.95 16.51 -3.24 -0.05 -24.01 16 12 N -0.58 -22.82 2.98 -820.40 -2.44 -25.26 16 13 C 0.11 3.26 6.44 86.36 0.56 3.81 16 14 C -0.13 -3.93 6.08 30.67 0.19 -3.75 16 15 C -0.10 -3.91 5.11 30.62 0.16 -3.76 16 16 C 0.04 1.75 2.25 -11.46 -0.03 1.73 16 17 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 18 C -0.53 -27.80 8.56 25.60 0.22 -27.59 16 19 H 0.06 3.20 7.74 -2.91 -0.02 3.18 16 20 C 0.02 0.97 5.30 84.66 0.45 1.41 16 21 N -0.90 -51.71 11.40 21.45 0.24 -51.46 16 22 Si 0.95 42.67 29.54 68.60 2.03 44.70 16 23 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 24 H -0.29 -13.04 7.11 99.48 0.71 -12.34 16 25 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 26 C 0.12 5.21 5.29 86.35 0.46 5.67 16 27 C 0.07 1.82 6.52 86.36 0.56 2.38 16 28 C 0.05 1.20 6.99 72.08 0.50 1.70 16 29 O -0.37 -9.93 10.35 -144.45 -1.50 -11.42 16 30 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.05 0.75 8.14 -2.38 -0.02 0.73 16 32 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.08 1.47 8.14 -2.38 -0.02 1.45 16 35 H 0.09 2.93 7.06 -2.39 -0.02 2.91 16 36 H 0.11 2.43 8.13 -2.39 -0.02 2.41 16 37 H 0.09 2.72 7.00 -2.39 -0.02 2.70 16 38 H 0.10 2.47 8.14 -2.38 -0.02 2.45 16 39 H 0.11 2.46 8.14 -2.39 -0.02 2.44 16 40 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 41 H 0.07 2.32 8.14 -2.38 -0.02 2.30 16 42 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 43 H 0.26 14.44 8.31 -92.71 -0.77 13.67 16 44 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 45 H 0.09 4.47 4.37 -2.39 -0.01 4.46 16 46 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 47 H 0.09 2.29 6.48 -2.39 -0.02 2.27 16 48 H 0.15 2.31 8.14 -2.39 -0.02 2.29 16 49 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -73.12 390.81 1.44 -71.69 By element: Atomic # 1 Polarization: 21.24 SS G_CDS: 0.94 Total: 22.18 kcal Atomic # 6 Polarization: 29.01 SS G_CDS: 6.29 Total: 35.30 kcal Atomic # 7 Polarization: -94.38 SS G_CDS: -4.68 Total: -99.06 kcal Atomic # 8 Polarization: -71.67 SS G_CDS: -3.14 Total: -74.81 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.70 kcal Total: -73.12 1.44 -71.69 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346939309.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.554 kcal (2) G-P(sol) polarization free energy of solvation -73.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds