Wall clock time and date at job start Tue Mar 31 2020 22:59:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42901 * 109.47212 * 2 1 4 4 C 1.42901 * 114.00279 * 179.97438 * 3 2 1 5 5 C 1.52994 * 109.47183 * 179.97438 * 4 3 2 6 6 H 1.08998 * 109.51632 * 54.99682 * 5 4 3 7 7 C 1.53294 * 109.51365 * 175.10100 * 5 4 3 8 8 N 1.47172 * 108.37909 * 172.17727 * 7 5 4 9 9 C 1.34770 * 120.94304 * 129.54775 * 8 7 5 10 10 O 1.21342 * 120.00327 * 350.58426 * 9 8 7 11 11 C 1.49452 * 119.99889 * 170.58837 * 9 8 7 12 12 O 1.21356 * 119.99828 * 353.90521 * 11 9 8 13 13 N 1.34775 * 120.00314 * 173.91353 * 11 9 8 14 14 C 1.46497 * 120.00043 * 185.18892 * 13 11 9 15 15 C 1.53006 * 109.46813 * 175.49557 * 14 13 11 16 16 C 1.50697 * 115.55027 * 65.43675 * 15 14 13 17 17 H 1.08002 * 119.99895 * 264.77617 * 16 15 14 18 18 C 1.37871 * 120.00260 * 84.77944 * 16 15 14 19 19 N 1.31519 * 120.00273 * 177.02718 * 18 16 15 20 20 Si 1.86799 * 120.00007 * 357.02876 * 18 16 15 21 21 H 1.48496 * 109.47321 * 90.32393 * 20 18 16 22 22 H 1.48503 * 109.47197 * 210.32585 * 20 18 16 23 23 H 1.48505 * 109.47098 * 330.32258 * 20 18 16 24 24 C 1.52996 * 117.49739 * 279.76125 * 15 14 13 25 25 C 1.53001 * 117.49821 * 211.10457 * 15 14 13 26 26 C 1.47148 * 118.07029 * 309.54298 * 8 7 5 27 27 C 1.53294 * 108.38673 * 50.50466 * 26 8 7 28 28 O 1.42962 * 109.22403 * 307.69437 * 27 26 8 29 29 H 1.09003 * 109.47465 * 300.00509 * 1 2 3 30 30 H 1.08998 * 109.46752 * 60.00207 * 1 2 3 31 31 H 1.08997 * 109.47261 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47287 * 239.99949 * 2 1 3 33 33 H 1.08999 * 109.47233 * 119.99568 * 2 1 3 34 34 H 1.09005 * 109.46746 * 299.99799 * 4 3 2 35 35 H 1.09003 * 109.46733 * 59.99649 * 4 3 2 36 36 H 1.08998 * 109.68268 * 291.94827 * 7 5 4 37 37 H 1.09001 * 109.68316 * 52.50227 * 7 5 4 38 38 H 0.97006 * 119.99319 * 5.18585 * 13 11 9 39 39 H 1.09000 * 109.46804 * 295.49227 * 14 13 11 40 40 H 1.08993 * 109.47459 * 55.49901 * 14 13 11 41 41 H 0.96996 * 120.00060 * 179.97438 * 19 18 16 42 42 H 1.09003 * 117.50221 * 0.02562 * 24 15 14 43 43 H 1.09000 * 117.49663 * 145.02252 * 24 15 14 44 44 H 1.08998 * 117.50061 * 214.98010 * 25 15 14 45 45 H 1.09002 * 117.49877 * 359.97438 * 25 15 14 46 46 H 1.09002 * 109.68858 * 290.77989 * 26 8 7 47 47 H 1.09003 * 109.71022 * 170.24073 * 26 8 7 48 48 H 1.08999 * 109.51818 * 187.77197 * 27 26 8 49 49 H 1.09003 * 109.55346 * 67.64068 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4602 0.0006 5 6 3.8254 2.9384 -0.0001 6 1 3.3495 3.4426 0.8409 7 6 5.3483 3.0620 0.1239 8 7 5.7164 4.4739 -0.0683 9 6 6.5162 5.1076 0.8121 10 8 6.8049 4.5737 1.8628 11 6 7.0476 6.4678 0.4943 12 8 6.8511 6.9556 -0.5994 13 7 7.7450 7.1526 1.4221 14 6 8.1679 8.5290 1.1523 15 6 8.8380 9.1103 2.3990 16 6 10.1329 8.4556 2.8060 17 1 10.1319 7.6739 3.5512 18 6 11.3189 8.8547 2.2272 19 7 12.4553 8.3248 2.6240 20 14 11.3117 10.1480 0.8794 21 1 11.4499 11.4962 1.4862 22 1 12.4461 9.9036 -0.0473 23 1 10.0332 10.0723 0.1275 24 6 7.9272 9.6283 3.5139 25 6 8.7019 10.6155 2.6374 26 6 5.1859 5.1732 -1.2493 27 6 3.6708 4.9468 -1.3053 28 8 3.4009 3.5453 -1.2230 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.8333 0.9768 0.8909 35 1 3.8340 0.9764 -0.8892 36 1 5.6641 2.7309 1.1132 37 1 5.8296 2.4507 -0.6394 38 1 7.9669 6.7340 2.2686 39 1 8.8753 8.5358 0.3231 40 1 7.2980 9.1322 0.8928 41 1 13.2896 8.6053 2.2165 42 1 6.8507 9.5547 3.3595 43 1 8.2648 9.4959 4.5418 44 1 9.5488 11.1322 3.0889 45 1 8.1354 11.1917 1.9058 46 1 5.6502 4.7746 -2.1514 47 1 5.3949 6.2400 -1.1696 48 1 3.2785 5.3386 -2.2438 49 1 3.1943 5.4590 -0.4694 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001352617456.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:59:27 Heat of formation + Delta-G solvation = -114.477343 kcal Electronic energy + Delta-G solvation = -30117.547181 eV Core-core repulsion = 25853.787717 eV Total energy + Delta-G solvation = -4263.759463 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.93064 -39.41740 -38.32225 -37.86085 -37.17065 -35.09894 -33.53917 -33.01006 -32.18498 -31.16918 -28.73886 -27.58772 -26.46517 -25.39637 -23.67847 -23.13552 -22.92944 -21.77334 -21.15329 -19.93091 -19.17677 -17.70403 -17.38311 -17.04874 -16.80921 -16.43540 -16.11090 -15.92716 -15.62078 -15.36539 -15.17637 -14.91870 -14.83903 -14.24780 -14.10863 -13.71132 -13.62168 -13.39554 -13.10293 -12.96342 -12.86597 -12.62140 -12.47925 -12.20980 -12.00601 -11.82141 -11.67925 -11.32207 -11.25553 -11.19409 -10.88694 -10.78575 -10.60658 -10.37152 -10.24870 -9.95755 -9.76456 -9.29958 -9.18798 -8.80610 -8.74792 -8.63816 -8.52058 -6.20076 -4.25646 1.55698 2.28887 3.20802 3.24012 3.33813 3.34513 3.37425 3.39804 3.62034 4.34157 4.46356 4.54217 4.59273 4.66541 4.69995 4.81045 4.87182 4.91217 4.98639 5.01202 5.04244 5.07259 5.12299 5.26102 5.30359 5.33849 5.52672 5.54036 5.55580 5.61706 5.75530 5.83016 5.92538 5.98289 6.05255 6.09824 6.32189 6.37266 6.63326 6.75933 6.80947 6.87002 6.91616 6.96436 7.01612 7.53937 7.60870 7.92532 8.28994 8.37084 8.81439 9.41930 10.91101 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.023853 B = 0.002185 C = 0.002161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.583754 B =12811.660292 C =12954.093079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.057 3.943 3 O -0.381 6.381 4 C 0.073 3.927 5 C 0.082 3.918 6 H 0.073 0.927 7 C 0.083 3.917 8 N -0.592 5.592 9 C 0.513 3.487 10 O -0.513 6.513 11 C 0.500 3.500 12 O -0.532 6.532 13 N -0.661 5.661 14 C 0.149 3.851 15 C -0.020 4.020 16 C -0.494 4.494 17 H 0.080 0.920 18 C 0.080 3.920 19 N -0.892 5.892 20 Si 0.878 3.122 21 H -0.276 1.276 22 H -0.292 1.292 23 H -0.256 1.256 24 C -0.176 4.176 25 C -0.189 4.189 26 C 0.044 3.956 27 C 0.047 3.953 28 O -0.370 6.370 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.070 0.930 32 H 0.049 0.951 33 H 0.048 0.952 34 H 0.068 0.932 35 H 0.061 0.939 36 H 0.106 0.894 37 H 0.082 0.918 38 H 0.419 0.581 39 H 0.074 0.926 40 H 0.053 0.947 41 H 0.266 0.734 42 H 0.073 0.927 43 H 0.089 0.911 44 H 0.092 0.908 45 H 0.075 0.925 46 H 0.077 0.923 47 H 0.147 0.853 48 H 0.109 0.891 49 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.308 -12.187 -6.989 24.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.020 4.020 3 O -0.300 6.300 4 C -0.004 4.004 5 C 0.023 3.977 6 H 0.091 0.909 7 C -0.040 4.040 8 N -0.327 5.327 9 C 0.296 3.704 10 O -0.388 6.388 11 C 0.280 3.720 12 O -0.412 6.412 13 N -0.311 5.311 14 C 0.026 3.974 15 C -0.022 4.022 16 C -0.531 4.531 17 H 0.098 0.902 18 C -0.123 4.123 19 N -0.528 5.528 20 Si 0.705 3.295 21 H -0.202 1.202 22 H -0.219 1.219 23 H -0.181 1.181 24 C -0.213 4.213 25 C -0.227 4.227 26 C -0.078 4.078 27 C -0.030 4.030 28 O -0.288 6.288 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.089 0.911 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.086 0.914 35 H 0.079 0.921 36 H 0.125 0.875 37 H 0.100 0.900 38 H 0.256 0.744 39 H 0.092 0.908 40 H 0.072 0.928 41 H 0.076 0.924 42 H 0.092 0.908 43 H 0.108 0.892 44 H 0.110 0.890 45 H 0.093 0.907 46 H 0.096 0.904 47 H 0.164 0.836 48 H 0.127 0.873 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -20.260 -12.045 -7.316 24.680 hybrid contribution 0.665 0.367 -0.224 0.792 sum -19.595 -11.678 -7.540 24.025 Atomic orbital electron populations 1.21736 0.93672 1.02188 1.03254 1.22475 0.95732 0.83719 1.00080 1.87942 1.20248 1.26360 1.95429 1.22384 0.82306 0.94376 1.01329 1.22390 0.92997 0.93540 0.88764 0.90905 1.22238 0.94721 0.82287 1.04749 1.47840 1.48112 1.11541 1.25250 1.20384 0.79335 0.87111 0.83548 1.90762 1.57556 1.67382 1.23085 1.19880 0.80923 0.85845 0.85328 1.90495 1.58753 1.69916 1.22071 1.45814 1.50863 1.15205 1.19188 1.21466 0.97410 0.79366 0.99143 1.19601 0.97205 0.92753 0.92615 1.20199 0.87237 1.21338 1.24293 0.90219 1.24984 0.95235 0.95933 0.96179 1.69889 0.97981 1.42961 1.41968 0.86893 0.78154 0.82096 0.82340 1.20238 1.21902 1.18089 1.22836 0.95766 1.05627 0.97103 1.22974 1.02801 0.93458 1.03442 1.23428 0.93726 1.03170 0.87448 1.23095 0.94705 0.82084 1.03120 1.88003 1.81759 1.22117 1.36967 0.91850 0.91755 0.91120 0.93319 0.93384 0.91367 0.92070 0.87544 0.90011 0.74410 0.90827 0.92838 0.92398 0.90830 0.89213 0.88975 0.90702 0.90426 0.83644 0.87330 0.92669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 10.28 37.16 0.38 -0.56 16 2 C 0.06 0.41 6.66 37.16 0.25 0.66 16 3 O -0.38 -3.90 10.31 -39.86 -0.41 -4.32 16 4 C 0.07 0.64 5.60 37.15 0.21 0.84 16 5 C 0.08 0.85 3.06 -26.58 -0.08 0.77 16 6 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 7 C 0.08 0.90 5.95 -3.52 -0.02 0.88 16 8 N -0.59 -7.83 3.02 -172.77 -0.52 -8.36 16 9 C 0.51 8.24 7.74 -11.59 -0.09 8.15 16 10 O -0.51 -9.19 15.98 5.50 0.09 -9.10 16 11 C 0.50 8.75 7.73 -11.58 -0.09 8.66 16 12 O -0.53 -9.60 13.26 5.49 0.07 -9.53 16 13 N -0.66 -12.38 5.47 -60.73 -0.33 -12.72 16 14 C 0.15 2.98 5.09 -4.04 -0.02 2.96 16 15 C -0.02 -0.44 0.84 -155.66 -0.13 -0.57 16 16 C -0.49 -12.82 9.18 -34.44 -0.32 -13.14 16 17 H 0.08 2.27 8.06 -52.49 -0.42 1.84 16 18 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 19 N -0.89 -26.16 13.96 55.43 0.77 -25.39 16 20 Si 0.88 20.78 25.11 -169.99 -4.27 16.51 16 21 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 22 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 23 H -0.26 -5.72 5.51 56.52 0.31 -5.41 16 24 C -0.18 -3.29 9.96 -26.70 -0.27 -3.56 16 25 C -0.19 -3.71 7.77 -26.70 -0.21 -3.92 16 26 C 0.04 0.51 6.09 -3.54 -0.02 0.49 16 27 C 0.05 0.48 6.98 37.31 0.26 0.74 16 28 O -0.37 -4.27 10.35 -39.86 -0.41 -4.68 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 32 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.11 1.17 7.07 -51.93 -0.37 0.80 16 37 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.42 7.97 7.83 -40.82 -0.32 7.65 16 39 H 0.07 1.61 6.20 -51.93 -0.32 1.29 16 40 H 0.05 0.98 8.09 -51.93 -0.42 0.56 16 41 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 42 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 43 H 0.09 1.70 8.14 -51.93 -0.42 1.28 16 44 H 0.09 1.91 7.56 -51.93 -0.39 1.52 16 45 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 46 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 47 H 0.15 1.91 4.59 -53.46 -0.25 1.67 16 48 H 0.11 0.87 8.14 -51.93 -0.42 0.45 16 49 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 395.42 15.07 5.96 5.96 Total: -1.00 -31.00 395.42 -7.35 -38.35 By element: Atomic # 1 Polarization: 16.83 SS G_CDS: -8.06 Total: 8.78 kcal Atomic # 6 Polarization: 4.74 SS G_CDS: -0.24 Total: 4.50 kcal Atomic # 7 Polarization: -46.38 SS G_CDS: -0.08 Total: -46.46 kcal Atomic # 8 Polarization: -26.97 SS G_CDS: -0.66 Total: -27.63 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -4.27 Total: 16.51 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -31.00 -7.35 -38.35 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001352617456.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.128 kcal (2) G-P(sol) polarization free energy of solvation -30.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds