Wall clock time and date at job start Wed Apr 1 2020 00:14:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34228 * 117.00366 * 2 1 4 4 O 1.20836 * 119.99756 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00639 * 179.97438 * 3 2 1 6 6 C 1.54708 * 107.01661 * 298.54864 * 5 3 2 7 7 N 1.48259 * 104.44980 * 269.13115 * 6 5 3 8 8 C 1.34774 * 127.81589 * 141.18605 * 7 6 5 9 9 O 1.21274 * 120.00660 * 0.02562 * 8 7 6 10 10 C 1.50701 * 119.99568 * 179.97438 * 8 7 6 11 11 H 1.09001 * 109.47228 * 40.00645 * 10 8 7 12 12 N 1.46908 * 109.47052 * 160.00059 * 10 8 7 13 13 C 1.53002 * 109.47305 * 279.99971 * 10 8 7 14 14 C 1.53004 * 109.47147 * 175.00225 * 13 10 8 15 15 C 1.50694 * 109.47024 * 180.02562 * 14 13 10 16 16 H 1.08002 * 119.99961 * 0.02562 * 15 14 13 17 17 C 1.37878 * 120.00172 * 179.97438 * 15 14 13 18 18 N 1.31513 * 120.00200 * 179.97438 * 17 15 14 19 19 Si 1.86803 * 119.99693 * 0.02562 * 17 15 14 20 20 H 1.48489 * 109.47242 * 89.99797 * 19 17 15 21 21 H 1.48500 * 109.46903 * 210.00017 * 19 17 15 22 22 H 1.48506 * 109.47109 * 329.99598 * 19 17 15 23 23 C 1.48291 * 104.36027 * 321.19021 * 7 6 5 24 24 C 1.51737 * 107.38390 * 185.87158 * 5 3 2 25 25 H 1.09003 * 108.02211 * 358.38328 * 24 5 3 26 26 C 1.51178 * 115.92138 * 236.29341 * 24 5 3 27 27 O 1.42740 * 110.81797 * 330.56222 * 26 24 5 28 28 C 1.42838 * 111.55022 * 65.67397 * 27 26 24 29 29 C 1.49606 * 107.13439 * 57.13513 * 5 3 2 30 30 H 1.09007 * 109.46510 * 60.00282 * 1 2 3 31 31 H 1.08998 * 109.46942 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47049 * 300.00165 * 1 2 3 33 33 H 1.09002 * 110.46200 * 150.35331 * 6 5 3 34 34 H 1.09003 * 110.46048 * 27.90876 * 6 5 3 35 35 H 1.00898 * 110.99897 * 296.04681 * 12 10 8 36 36 H 1.00895 * 110.99736 * 59.99914 * 12 10 8 37 37 H 1.08997 * 109.46988 * 295.00341 * 13 10 8 38 38 H 1.08998 * 109.46761 * 55.00304 * 13 10 8 39 39 H 1.09002 * 109.46815 * 299.99895 * 14 13 10 40 40 H 1.08998 * 109.47034 * 59.99601 * 14 13 10 41 41 H 0.96995 * 120.00215 * 179.97438 * 18 17 15 42 42 H 1.09000 * 110.48498 * 157.70118 * 23 7 6 43 43 H 1.09008 * 110.47949 * 280.20068 * 23 7 6 44 44 H 1.09004 * 109.20820 * 90.90545 * 26 24 5 45 45 H 1.09000 * 109.21142 * 210.26075 * 26 24 5 46 46 H 1.08997 * 109.31440 * 53.87235 * 28 27 26 47 47 H 1.08994 * 109.32155 * 173.50061 * 28 27 26 48 48 H 1.09004 * 108.04273 * 1.24254 * 29 5 3 49 49 H 1.09005 * 108.09889 * 244.82152 * 29 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2094 -0.0005 5 6 3.5664 1.2749 0.0006 6 6 4.0550 0.5928 1.3004 7 7 4.1262 1.6933 2.2914 8 6 3.7933 1.6525 3.5968 9 8 3.3789 0.6228 4.0851 10 6 3.9373 2.8865 4.4498 11 1 3.6218 3.7608 3.8803 12 7 3.0980 2.7539 5.6483 13 6 5.4001 3.0502 4.8672 14 6 5.5692 4.3672 5.6276 15 6 7.0101 4.5287 6.0381 16 1 7.7331 3.7683 5.7819 17 6 7.4058 5.6476 6.7398 18 7 8.6632 5.7884 7.0985 19 14 6.1554 6.9631 7.1822 20 1 5.5554 6.6511 8.5042 21 1 6.8287 8.2852 7.2438 22 1 5.0882 6.9987 6.1502 23 6 4.6463 2.8488 1.5212 24 6 3.9436 2.7372 0.1486 25 1 3.0237 3.3209 0.1836 26 6 4.8331 3.3031 -0.9349 27 8 5.6729 2.2877 -1.4837 28 6 4.9128 1.2941 -2.1731 29 6 4.0476 0.5230 -1.1999 30 1 -0.3632 0.5138 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8899 33 1 5.0398 0.1501 1.1514 34 1 3.3422 -0.1657 1.6239 35 1 2.1205 2.7091 5.4020 36 1 3.3708 1.9500 6.1935 37 1 5.6895 2.2194 5.5107 38 1 6.0323 3.0595 3.9794 39 1 5.2798 5.1979 4.9840 40 1 4.9369 4.3579 6.5153 41 1 8.9416 6.5757 7.5919 42 1 4.3796 3.7851 2.0113 43 1 5.7277 2.7744 1.4056 44 1 4.2118 3.7214 -1.7269 45 1 5.4550 4.0924 -0.5125 46 1 4.2777 1.7770 -2.9158 47 1 5.5916 0.6035 -2.6734 48 1 3.1752 0.1548 -1.7398 49 1 4.6146 -0.3412 -0.8534 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001578840797.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:14:40 Heat of formation + Delta-G solvation = -154.697719 kcal Electronic energy + Delta-G solvation = -31725.644392 eV Core-core repulsion = 27460.140842 eV Total energy + Delta-G solvation = -4265.503550 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.06478 -40.02339 -39.29693 -37.22393 -36.65988 -35.37050 -33.87005 -32.75342 -32.04408 -30.49832 -29.26936 -28.09712 -26.94823 -25.96199 -24.89928 -23.54592 -22.91133 -21.98277 -20.23605 -19.53780 -18.93935 -17.98727 -17.67648 -17.17589 -16.94213 -16.72318 -16.46365 -15.99932 -15.83775 -15.59122 -15.46769 -14.98924 -14.41131 -14.10445 -14.04372 -13.91774 -13.64169 -13.26071 -13.18974 -12.93830 -12.78248 -12.57611 -12.50989 -12.37849 -12.35869 -11.90190 -11.71206 -11.64926 -11.20309 -11.13472 -10.97353 -10.88040 -10.79493 -10.61778 -10.38496 -10.01391 -9.97413 -9.70721 -9.60005 -9.10793 -8.89634 -8.52549 -8.41487 -5.98365 -3.95946 1.76810 2.16943 2.62439 2.80136 3.38382 3.44891 3.50269 3.55242 3.72332 3.93377 4.11812 4.44573 4.45994 4.52222 4.56840 4.70505 4.72743 4.74875 4.79600 4.87372 4.91408 5.07486 5.10255 5.12346 5.23855 5.28662 5.33599 5.36948 5.39757 5.43723 5.45108 5.49358 5.66682 5.69228 5.76154 5.98828 5.99896 6.30078 6.48287 6.71732 6.87029 7.22557 7.28155 7.38754 7.44005 7.56925 7.64008 7.87013 8.11597 8.59175 9.06448 9.64641 11.15133 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.014164 B = 0.003189 C = 0.002857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1976.303619 B = 8779.229609 C = 9798.214680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.354 6.354 3 C 0.465 3.535 4 O -0.499 6.499 5 C -0.036 4.036 6 C 0.114 3.886 7 N -0.624 5.624 8 C 0.507 3.493 9 O -0.550 6.550 10 C 0.079 3.921 11 H 0.098 0.902 12 N -0.810 5.810 13 C -0.086 4.086 14 C -0.003 4.003 15 C -0.521 4.521 16 H 0.069 0.931 17 C 0.066 3.934 18 N -0.906 5.906 19 Si 0.882 3.118 20 H -0.277 1.277 21 H -0.291 1.291 22 H -0.264 1.264 23 C 0.107 3.893 24 C -0.140 4.140 25 H 0.117 0.883 26 C 0.070 3.930 27 O -0.363 6.363 28 C 0.062 3.938 29 C -0.142 4.142 30 H 0.063 0.937 31 H 0.104 0.896 32 H 0.064 0.936 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.335 0.665 36 H 0.350 0.650 37 H 0.059 0.941 38 H 0.061 0.939 39 H 0.012 0.988 40 H 0.029 0.971 41 H 0.262 0.738 42 H 0.093 0.907 43 H 0.089 0.911 44 H 0.058 0.942 45 H 0.109 0.891 46 H 0.052 0.948 47 H 0.102 0.898 48 H 0.079 0.921 49 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.265 -11.081 -22.332 28.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.270 6.270 3 C 0.308 3.692 4 O -0.386 6.386 5 C -0.038 4.038 6 C -0.010 4.010 7 N -0.359 5.359 8 C 0.296 3.704 9 O -0.427 6.427 10 C -0.036 4.036 11 H 0.115 0.885 12 N -0.338 5.338 13 C -0.125 4.125 14 C -0.041 4.041 15 C -0.559 4.559 16 H 0.087 0.913 17 C -0.135 4.135 18 N -0.545 5.545 19 Si 0.709 3.291 20 H -0.203 1.203 21 H -0.217 1.217 22 H -0.189 1.189 23 C -0.016 4.016 24 C -0.159 4.159 25 H 0.135 0.865 26 C -0.007 4.007 27 O -0.281 6.281 28 C -0.015 4.015 29 C -0.181 4.181 30 H 0.082 0.918 31 H 0.122 0.878 32 H 0.082 0.918 33 H 0.109 0.891 34 H 0.111 0.889 35 H 0.147 0.853 36 H 0.164 0.836 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.031 0.969 40 H 0.047 0.953 41 H 0.072 0.928 42 H 0.112 0.888 43 H 0.107 0.893 44 H 0.077 0.923 45 H 0.127 0.873 46 H 0.071 0.929 47 H 0.120 0.880 48 H 0.098 0.902 49 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -14.157 -10.517 -21.557 27.852 hybrid contribution -1.474 -0.246 -0.200 1.508 sum -15.631 -10.763 -21.757 28.871 Atomic orbital electron populations 1.23317 0.75896 1.03959 1.02656 1.86479 1.23696 1.32869 1.83943 1.23778 0.92223 0.81512 0.71716 1.90622 1.66657 1.36160 1.45121 1.20102 0.87387 0.97987 0.98360 1.22674 1.02683 0.90813 0.84815 1.49164 1.65358 1.12858 1.08503 1.22445 0.75356 0.92390 0.80198 1.90662 1.46912 1.33448 1.71673 1.21864 0.98768 0.93023 0.89977 0.88450 1.59061 1.06568 1.49223 1.18903 1.21471 0.88798 1.01682 1.00524 1.19477 0.97468 0.91303 0.95821 1.21169 0.93003 1.06403 1.35283 0.91268 1.25009 0.95064 0.98074 0.95321 1.69921 1.15893 1.29020 1.39712 0.86743 0.81852 0.80961 0.79495 1.20308 1.21700 1.18903 1.22792 0.99271 0.90346 0.89199 1.22115 1.02688 0.94044 0.97070 0.86543 1.22181 0.93506 0.90623 0.94385 1.88220 1.31706 1.36233 1.71963 1.22239 0.94973 0.91228 0.93068 1.21117 1.01719 0.99958 0.95258 0.91807 0.87810 0.91755 0.89139 0.88927 0.85334 0.83558 0.92196 0.92067 0.96928 0.95268 0.92838 0.88825 0.89255 0.92345 0.87264 0.92933 0.87966 0.90225 0.89237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.26 10.56 101.05 1.07 1.33 16 2 O -0.35 -3.53 9.53 -39.25 -0.37 -3.90 16 3 C 0.47 5.18 5.92 36.00 0.21 5.39 16 4 O -0.50 -6.65 14.63 -18.76 -0.27 -6.92 16 5 C -0.04 -0.34 0.93 -157.08 -0.15 -0.49 16 6 C 0.11 1.28 5.73 -2.17 -0.01 1.27 16 7 N -0.62 -8.37 3.32 -168.76 -0.56 -8.93 16 8 C 0.51 8.22 7.15 -10.99 -0.08 8.14 16 9 O -0.55 -10.28 16.53 5.56 0.09 -10.19 16 10 C 0.08 1.31 2.59 -68.86 -0.18 1.13 16 11 H 0.10 1.50 6.98 -51.93 -0.36 1.14 16 12 N -0.81 -13.16 8.44 -5.65 -0.05 -13.21 16 13 C -0.09 -1.69 4.78 -26.73 -0.13 -1.82 16 14 C 0.00 -0.08 3.93 -27.88 -0.11 -0.19 16 15 C -0.52 -14.84 9.66 -34.44 -0.33 -15.17 16 16 H 0.07 2.12 7.99 -52.49 -0.42 1.70 16 17 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 18 N -0.91 -28.17 13.96 55.43 0.77 -27.40 16 19 Si 0.88 22.07 27.47 -169.99 -4.67 17.40 16 20 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 21 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 22 H -0.26 -6.34 6.54 56.52 0.37 -5.97 16 23 C 0.11 1.19 5.92 -2.21 -0.01 1.18 16 24 C -0.14 -1.35 2.77 -91.33 -0.25 -1.60 16 25 H 0.12 1.27 5.88 -51.93 -0.31 0.96 16 26 C 0.07 0.57 6.17 36.24 0.22 0.79 16 27 O -0.36 -3.28 10.88 -35.23 -0.38 -3.66 16 28 C 0.06 0.40 6.79 36.32 0.25 0.65 16 29 C -0.14 -0.99 5.29 -29.25 -0.15 -1.15 16 30 H 0.06 0.43 8.13 -51.93 -0.42 0.01 16 31 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.54 8.13 -51.93 -0.42 0.12 16 33 H 0.09 0.92 7.65 -51.93 -0.40 0.52 16 34 H 0.09 1.15 7.15 -51.93 -0.37 0.78 16 35 H 0.33 4.78 9.06 -39.29 -0.36 4.42 16 36 H 0.35 5.78 8.58 -39.29 -0.34 5.44 16 37 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 38 H 0.06 1.15 7.83 -51.93 -0.41 0.74 16 39 H 0.01 0.29 7.20 -51.93 -0.37 -0.08 16 40 H 0.03 0.71 7.18 -51.93 -0.37 0.34 16 41 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 42 H 0.09 1.03 6.76 -51.93 -0.35 0.68 16 43 H 0.09 0.97 7.93 -51.92 -0.41 0.56 16 44 H 0.06 0.41 7.98 -51.93 -0.41 0.00 16 45 H 0.11 0.80 7.82 -51.93 -0.41 0.39 16 46 H 0.05 0.30 7.97 -51.93 -0.41 -0.12 16 47 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 48 H 0.08 0.50 7.01 -51.93 -0.36 0.14 16 49 H 0.09 0.54 7.23 -51.93 -0.38 0.17 16 LS Contribution 386.36 15.07 5.82 5.82 Total: -1.00 -35.70 386.36 -7.09 -42.79 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: -7.72 Total: 6.89 kcal Atomic # 6 Polarization: 1.06 SS G_CDS: 0.25 Total: 1.31 kcal Atomic # 7 Polarization: -49.70 SS G_CDS: 0.16 Total: -49.54 kcal Atomic # 8 Polarization: -23.74 SS G_CDS: -0.94 Total: -24.68 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.67 Total: 17.40 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -35.70 -7.09 -42.79 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001578840797.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.909 kcal (2) G-P(sol) polarization free energy of solvation -35.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds