Wall clock time and date at job start Wed Apr 1 2020 00:14:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34228 * 117.00366 * 2 1 4 4 O 1.20836 * 119.99756 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00639 * 179.97438 * 3 2 1 6 6 C 1.54708 * 107.01661 * 298.54864 * 5 3 2 7 7 N 1.48259 * 104.44980 * 269.13115 * 6 5 3 8 8 C 1.34774 * 127.81589 * 141.18605 * 7 6 5 9 9 O 1.21274 * 120.00660 * 0.02562 * 8 7 6 10 10 C 1.50701 * 119.99568 * 179.97438 * 8 7 6 11 11 H 1.09001 * 109.47228 * 40.00645 * 10 8 7 12 12 N 1.46908 * 109.47052 * 160.00059 * 10 8 7 13 13 C 1.53002 * 109.47305 * 279.99971 * 10 8 7 14 14 C 1.53004 * 109.47147 * 175.00225 * 13 10 8 15 15 C 1.50694 * 109.47024 * 180.02562 * 14 13 10 16 16 H 1.08002 * 119.99961 * 0.02562 * 15 14 13 17 17 C 1.37878 * 120.00172 * 179.97438 * 15 14 13 18 18 N 1.31513 * 120.00200 * 179.97438 * 17 15 14 19 19 Si 1.86803 * 119.99693 * 0.02562 * 17 15 14 20 20 H 1.48489 * 109.47242 * 89.99797 * 19 17 15 21 21 H 1.48500 * 109.46903 * 210.00017 * 19 17 15 22 22 H 1.48506 * 109.47109 * 329.99598 * 19 17 15 23 23 C 1.48291 * 104.36027 * 321.19021 * 7 6 5 24 24 C 1.51737 * 107.38390 * 185.87158 * 5 3 2 25 25 H 1.09003 * 108.02211 * 358.38328 * 24 5 3 26 26 C 1.51178 * 115.92138 * 236.29341 * 24 5 3 27 27 O 1.42740 * 110.81797 * 330.56222 * 26 24 5 28 28 C 1.42838 * 111.55022 * 65.67397 * 27 26 24 29 29 C 1.49606 * 107.13439 * 57.13513 * 5 3 2 30 30 H 1.09007 * 109.46510 * 60.00282 * 1 2 3 31 31 H 1.08998 * 109.46942 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47049 * 300.00165 * 1 2 3 33 33 H 1.09002 * 110.46200 * 150.35331 * 6 5 3 34 34 H 1.09003 * 110.46048 * 27.90876 * 6 5 3 35 35 H 1.00898 * 110.99897 * 296.04681 * 12 10 8 36 36 H 1.00895 * 110.99736 * 59.99914 * 12 10 8 37 37 H 1.08997 * 109.46988 * 295.00341 * 13 10 8 38 38 H 1.08998 * 109.46761 * 55.00304 * 13 10 8 39 39 H 1.09002 * 109.46815 * 299.99895 * 14 13 10 40 40 H 1.08998 * 109.47034 * 59.99601 * 14 13 10 41 41 H 0.96995 * 120.00215 * 179.97438 * 18 17 15 42 42 H 1.09000 * 110.48498 * 157.70118 * 23 7 6 43 43 H 1.09008 * 110.47949 * 280.20068 * 23 7 6 44 44 H 1.09004 * 109.20820 * 90.90545 * 26 24 5 45 45 H 1.09000 * 109.21142 * 210.26075 * 26 24 5 46 46 H 1.08997 * 109.31440 * 53.87235 * 28 27 26 47 47 H 1.08994 * 109.32155 * 173.50061 * 28 27 26 48 48 H 1.09004 * 108.04273 * 1.24254 * 29 5 3 49 49 H 1.09005 * 108.09889 * 244.82152 * 29 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2094 -0.0005 5 6 3.5664 1.2749 0.0006 6 6 4.0550 0.5928 1.3004 7 7 4.1262 1.6933 2.2914 8 6 3.7933 1.6525 3.5968 9 8 3.3789 0.6228 4.0851 10 6 3.9373 2.8865 4.4498 11 1 3.6218 3.7608 3.8803 12 7 3.0980 2.7539 5.6483 13 6 5.4001 3.0502 4.8672 14 6 5.5692 4.3672 5.6276 15 6 7.0101 4.5287 6.0381 16 1 7.7331 3.7683 5.7819 17 6 7.4058 5.6476 6.7398 18 7 8.6632 5.7884 7.0985 19 14 6.1554 6.9631 7.1822 20 1 5.5554 6.6511 8.5042 21 1 6.8287 8.2852 7.2438 22 1 5.0882 6.9987 6.1502 23 6 4.6463 2.8488 1.5212 24 6 3.9436 2.7372 0.1486 25 1 3.0237 3.3209 0.1836 26 6 4.8331 3.3031 -0.9349 27 8 5.6729 2.2877 -1.4837 28 6 4.9128 1.2941 -2.1731 29 6 4.0476 0.5230 -1.1999 30 1 -0.3632 0.5138 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8899 33 1 5.0398 0.1501 1.1514 34 1 3.3422 -0.1657 1.6239 35 1 2.1205 2.7091 5.4020 36 1 3.3708 1.9500 6.1935 37 1 5.6895 2.2194 5.5107 38 1 6.0323 3.0595 3.9794 39 1 5.2798 5.1979 4.9840 40 1 4.9369 4.3579 6.5153 41 1 8.9416 6.5757 7.5919 42 1 4.3796 3.7851 2.0113 43 1 5.7277 2.7744 1.4056 44 1 4.2118 3.7214 -1.7269 45 1 5.4550 4.0924 -0.5125 46 1 4.2777 1.7770 -2.9158 47 1 5.5916 0.6035 -2.6734 48 1 3.1752 0.1548 -1.7398 49 1 4.6146 -0.3412 -0.8534 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001578840797.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:14:39 Heat of formation + Delta-G solvation = -181.450975 kcal Electronic energy + Delta-G solvation = -31726.804500 eV Core-core repulsion = 27460.140842 eV Total energy + Delta-G solvation = -4266.663658 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.88972 -41.06741 -40.20018 -38.03360 -37.56760 -36.90613 -34.84732 -34.59361 -32.87349 -32.31886 -30.02551 -29.00107 -28.18942 -27.05094 -25.94388 -24.37283 -24.19703 -22.79138 -21.99109 -20.62834 -19.79891 -19.03966 -18.70788 -18.53624 -18.06215 -17.77663 -17.32857 -17.08535 -16.70100 -16.57754 -16.45122 -16.16332 -15.89758 -15.35612 -15.13555 -14.81475 -14.76234 -14.55305 -14.26142 -14.05230 -13.88591 -13.74299 -13.56942 -13.52370 -13.25076 -13.03755 -12.83045 -12.72263 -12.49698 -12.37249 -12.01165 -11.94675 -11.84255 -11.71676 -11.64221 -11.60791 -11.31140 -11.27094 -11.18073 -10.70713 -10.61042 -9.97709 -9.78035 -8.24124 -6.27288 0.91932 1.32702 1.41986 1.42882 1.47625 1.55618 1.72944 2.41780 2.89949 3.03463 3.11948 3.12482 3.40610 3.44148 3.59409 3.73096 3.81539 3.96284 4.03512 4.14611 4.16510 4.19298 4.19399 4.21788 4.30878 4.44981 4.48582 4.55819 4.57561 4.62014 4.67447 4.75442 4.78272 4.86625 4.88092 4.92853 5.02748 5.11279 5.16486 5.22293 5.48386 5.63743 5.72206 5.97418 6.15580 6.28282 6.33262 6.40686 6.46716 6.80822 6.88057 7.37154 8.92754 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.014164 B = 0.003189 C = 0.002857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1976.303619 B = 8779.229609 C = 9798.214680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.357 6.357 3 C 0.463 3.537 4 O -0.525 6.525 5 C -0.029 4.029 6 C 0.111 3.889 7 N -0.624 5.624 8 C 0.506 3.494 9 O -0.580 6.580 10 C 0.089 3.911 11 H 0.114 0.886 12 N -0.815 5.815 13 C -0.076 4.076 14 C 0.005 3.995 15 C -0.530 4.530 16 H 0.030 0.970 17 C 0.005 3.995 18 N -0.954 5.954 19 Si 0.951 3.049 20 H -0.273 1.273 21 H -0.286 1.286 22 H -0.242 1.242 23 C 0.101 3.899 24 C -0.131 4.131 25 H 0.106 0.894 26 C 0.072 3.928 27 O -0.380 6.380 28 C 0.059 3.941 29 C -0.141 4.141 30 H 0.071 0.929 31 H 0.133 0.867 32 H 0.051 0.949 33 H 0.104 0.896 34 H 0.080 0.920 35 H 0.347 0.653 36 H 0.347 0.653 37 H 0.041 0.959 38 H 0.066 0.934 39 H 0.024 0.976 40 H 0.026 0.974 41 H 0.265 0.735 42 H 0.096 0.904 43 H 0.094 0.906 44 H 0.071 0.929 45 H 0.116 0.884 46 H 0.063 0.937 47 H 0.121 0.879 48 H 0.089 0.911 49 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.852 -10.795 -24.196 30.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.273 6.273 3 C 0.307 3.693 4 O -0.414 6.414 5 C -0.031 4.031 6 C -0.012 4.012 7 N -0.357 5.357 8 C 0.295 3.705 9 O -0.460 6.460 10 C -0.027 4.027 11 H 0.131 0.869 12 N -0.344 5.344 13 C -0.114 4.114 14 C -0.033 4.033 15 C -0.568 4.568 16 H 0.048 0.952 17 C -0.192 4.192 18 N -0.595 5.595 19 Si 0.775 3.225 20 H -0.199 1.199 21 H -0.212 1.212 22 H -0.165 1.165 23 C -0.021 4.021 24 C -0.150 4.150 25 H 0.124 0.876 26 C -0.005 4.005 27 O -0.298 6.298 28 C -0.018 4.018 29 C -0.179 4.179 30 H 0.089 0.911 31 H 0.151 0.849 32 H 0.070 0.930 33 H 0.122 0.878 34 H 0.099 0.901 35 H 0.160 0.840 36 H 0.161 0.839 37 H 0.060 0.940 38 H 0.085 0.915 39 H 0.042 0.958 40 H 0.045 0.955 41 H 0.074 0.926 42 H 0.114 0.886 43 H 0.112 0.888 44 H 0.090 0.910 45 H 0.134 0.866 46 H 0.081 0.919 47 H 0.139 0.861 48 H 0.107 0.893 49 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -15.754 -10.247 -23.474 30.070 hybrid contribution -0.940 -0.438 0.336 1.090 sum -16.695 -10.684 -23.138 30.467 Atomic orbital electron populations 1.23572 0.74582 1.05871 1.02421 1.86477 1.25055 1.32281 1.83503 1.24101 0.92816 0.81435 0.70962 1.90610 1.67345 1.36985 1.46473 1.20142 0.86485 0.97966 0.98487 1.22837 1.03222 0.90180 0.84992 1.49188 1.64006 1.14406 1.08117 1.22216 0.75535 0.91676 0.81114 1.90644 1.48604 1.34215 1.72573 1.21648 0.96615 0.94049 0.90379 0.86877 1.59052 1.07423 1.49125 1.18824 1.21238 0.91382 0.98903 0.99910 1.19351 0.94015 0.93677 0.96253 1.21523 0.94874 1.05363 1.35015 0.95205 1.25973 0.97112 1.00799 0.95279 1.70073 1.18272 1.30143 1.41015 0.85639 0.79492 0.77606 0.79742 1.19855 1.21183 1.16547 1.22997 0.99671 0.89653 0.89818 1.22048 1.02287 0.94061 0.96652 0.87604 1.22215 0.93484 0.90592 0.94249 1.88205 1.32578 1.36829 1.72221 1.22434 0.95341 0.91136 0.92877 1.21156 1.02379 0.99985 0.94395 0.91059 0.84902 0.92989 0.87761 0.90133 0.83972 0.83871 0.94026 0.91525 0.95792 0.95538 0.92626 0.88561 0.88777 0.91037 0.86626 0.91882 0.86099 0.89290 0.88145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.56 113.37 1.20 1.58 16 2 O -0.36 -6.66 9.53 -51.40 -0.49 -7.15 16 3 C 0.46 9.76 5.92 71.23 0.42 10.18 16 4 O -0.53 -13.56 14.63 21.93 0.32 -13.24 16 5 C -0.03 -0.50 0.93 -53.85 -0.05 -0.55 16 6 C 0.11 2.37 5.73 86.62 0.50 2.87 16 7 N -0.62 -16.16 3.32 -806.22 -2.68 -18.84 16 8 C 0.51 16.11 7.15 87.66 0.63 16.73 16 9 O -0.58 -21.65 16.53 -3.01 -0.05 -21.70 16 10 C 0.09 2.83 2.59 44.17 0.11 2.95 16 11 H 0.11 3.26 6.98 -2.39 -0.02 3.24 16 12 N -0.82 -25.64 8.44 -171.78 -1.45 -27.09 16 13 C -0.08 -2.95 4.78 30.60 0.15 -2.80 16 14 C 0.00 0.21 3.93 29.85 0.12 0.33 16 15 C -0.53 -30.65 9.66 25.60 0.25 -30.40 16 16 H 0.03 1.90 7.99 -2.91 -0.02 1.88 16 17 C 0.00 0.28 5.47 84.66 0.46 0.74 16 18 N -0.95 -60.46 13.96 21.45 0.30 -60.16 16 19 Si 0.95 44.96 27.47 68.60 1.88 46.84 16 20 H -0.27 -12.67 7.11 99.48 0.71 -11.97 16 21 H -0.29 -13.20 7.11 99.48 0.71 -12.50 16 22 H -0.24 -10.49 6.54 99.48 0.65 -9.84 16 23 C 0.10 2.11 5.92 86.58 0.51 2.62 16 24 C -0.13 -2.32 2.77 -11.26 -0.03 -2.35 16 25 H 0.11 2.17 5.88 -2.39 -0.01 2.16 16 26 C 0.07 1.02 6.17 71.39 0.44 1.46 16 27 O -0.38 -5.97 10.88 -148.98 -1.62 -7.59 16 28 C 0.06 0.60 6.79 71.44 0.49 1.09 16 29 C -0.14 -1.63 5.29 28.96 0.15 -1.48 16 30 H 0.07 0.86 8.13 -2.38 -0.02 0.84 16 31 H 0.13 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.05 0.84 8.13 -2.39 -0.02 0.82 16 33 H 0.10 1.96 7.65 -2.39 -0.02 1.94 16 34 H 0.08 1.95 7.15 -2.39 -0.02 1.93 16 35 H 0.35 9.45 9.06 -89.70 -0.81 8.64 16 36 H 0.35 11.34 8.58 -89.70 -0.77 10.57 16 37 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.07 2.48 7.83 -2.39 -0.02 2.46 16 39 H 0.02 1.06 7.20 -2.39 -0.02 1.04 16 40 H 0.03 1.25 7.18 -2.39 -0.02 1.23 16 41 H 0.26 15.67 8.31 -92.71 -0.77 14.90 16 42 H 0.10 1.96 6.76 -2.39 -0.02 1.94 16 43 H 0.09 1.92 7.93 -2.38 -0.02 1.90 16 44 H 0.07 0.84 7.98 -2.38 -0.02 0.82 16 45 H 0.12 1.46 7.82 -2.39 -0.02 1.44 16 46 H 0.06 0.53 7.97 -2.39 -0.02 0.51 16 47 H 0.12 0.79 8.14 -2.39 -0.02 0.77 16 48 H 0.09 0.89 7.01 -2.39 -0.02 0.87 16 49 H 0.10 0.96 7.23 -2.38 -0.02 0.94 16 Total: -1.00 -77.64 386.36 0.90 -76.74 By element: Atomic # 1 Polarization: 29.89 SS G_CDS: -0.65 Total: 29.23 kcal Atomic # 6 Polarization: -2.38 SS G_CDS: 5.34 Total: 2.96 kcal Atomic # 7 Polarization: -102.26 SS G_CDS: -3.83 Total: -106.09 kcal Atomic # 8 Polarization: -47.84 SS G_CDS: -1.84 Total: -49.68 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 1.88 Total: 46.84 kcal Total: -77.64 0.90 -76.74 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001578840797.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.711 kcal (2) G-P(sol) polarization free energy of solvation -77.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds