Wall clock time and date at job start Wed Apr 1 2020 00:26:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86797 * 119.99770 * 2 1 4 4 H 1.48501 * 109.47099 * 239.99996 * 3 2 1 5 5 H 1.48495 * 109.47522 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46963 * 120.00830 * 3 2 1 7 7 C 1.39948 * 120.00185 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00233 * 195.37647 * 7 2 1 9 9 C 1.41395 * 119.99804 * 15.37239 * 7 2 1 10 10 C 1.40450 * 119.96739 * 25.74114 * 9 7 2 11 11 C 1.37598 * 119.53950 * 180.30693 * 10 9 7 12 12 C 1.38378 * 119.99048 * 0.12095 * 11 10 9 13 13 C 1.39251 * 121.05577 * 359.87251 * 12 11 10 14 14 C 1.37089 * 119.97488 * 359.66038 * 13 12 11 15 15 C 1.50574 * 123.00568 * 180.96631 * 14 13 12 16 16 C 1.53286 * 110.83640 * 339.98733 * 15 14 13 17 17 N 1.47253 * 107.56672 * 47.56511 * 16 15 14 18 18 C 1.34776 * 121.35146 * 115.88944 * 17 16 15 19 19 O 1.21276 * 119.99725 * 359.71767 * 18 17 16 20 20 C 1.50699 * 119.99900 * 179.71993 * 18 17 16 21 21 C 1.54111 * 111.69159 * 60.81124 * 20 18 17 22 22 C 1.54888 * 104.15568 * 97.69912 * 21 20 18 23 23 C 1.54820 * 102.73997 * 38.45300 * 22 21 20 24 24 C 1.54272 * 104.42482 * 322.20186 * 23 22 21 25 25 H 1.09004 * 111.35923 * 261.23475 * 24 23 22 26 26 N 1.47924 * 108.70582 * 137.55009 * 24 23 22 27 27 C 1.48474 * 105.99262 * 220.56645 * 26 24 23 28 28 C 1.54448 * 112.39734 * 297.88956 * 20 18 17 29 29 C 1.46666 * 117.29695 * 295.62251 * 17 16 15 30 30 H 0.96999 * 120.00408 * 359.97438 * 1 2 3 31 31 H 1.07997 * 120.22396 * 0.32489 * 10 9 7 32 32 H 1.07993 * 120.00631 * 180.14401 * 11 10 9 33 33 H 1.08006 * 119.47719 * 179.88686 * 12 11 10 34 34 H 1.09001 * 109.19745 * 100.46466 * 15 14 13 35 35 H 1.09001 * 109.20032 * 219.79495 * 15 14 13 36 36 H 1.08997 * 109.92352 * 288.06528 * 16 15 14 37 37 H 1.09004 * 109.91934 * 167.06265 * 16 15 14 38 38 H 1.08994 * 110.49574 * 339.02945 * 21 20 18 39 39 H 1.08999 * 110.49395 * 216.36487 * 21 20 18 40 40 H 1.08999 * 110.75792 * 280.13730 * 22 21 20 41 41 H 1.09005 * 110.91416 * 156.83565 * 22 21 20 42 42 H 1.09008 * 110.44301 * 203.46796 * 23 22 21 43 43 H 1.08995 * 110.44432 * 80.94549 * 23 22 21 44 44 H 1.00901 * 111.00382 * 341.18442 * 26 24 23 45 45 H 1.09000 * 110.66752 * 280.77832 * 27 26 24 46 46 H 1.09000 * 110.81622 * 157.71238 * 27 26 24 47 47 H 1.08997 * 110.71776 * 19.00034 * 28 20 18 48 48 H 1.09005 * 110.71810 * 142.27309 * 28 20 18 49 49 H 1.09003 * 109.42866 * 164.56875 * 29 17 16 50 50 H 1.09008 * 109.42416 * 284.41041 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.0959 1.6964 -1.2125 5 1 1.2772 2.7464 0.0006 6 1 3.0961 1.6963 1.2124 7 6 2.0080 -1.2120 -0.0005 8 1 3.0590 -1.2288 0.2474 9 6 1.3390 -2.4144 -0.3257 10 6 0.1962 -2.3829 -1.1415 11 6 -0.4517 -3.5577 -1.4472 12 6 0.0222 -4.7587 -0.9495 13 6 1.1541 -4.8042 -0.1397 14 6 1.8214 -3.6474 0.1702 15 6 3.0632 -3.6198 1.0214 16 6 3.1762 -4.8962 1.8626 17 7 2.9327 -6.0406 0.9685 18 6 3.8942 -6.9509 0.7169 19 8 4.9883 -6.8339 1.2269 20 6 3.6099 -8.1139 -0.1982 21 6 3.2349 -7.6439 -1.6172 22 6 4.5563 -7.7616 -2.4167 23 6 5.1785 -9.0646 -1.8580 24 6 4.8412 -9.0369 -0.3529 25 1 5.6846 -8.6770 0.2364 26 7 4.4165 -10.3915 0.0630 27 6 3.2737 -10.1951 0.9904 28 6 2.4881 -9.0276 0.3425 29 6 1.5995 -6.1531 0.3678 30 1 -0.4851 0.8400 0.0004 31 1 -0.1713 -1.4431 -1.5264 32 1 -1.3298 -3.5425 -2.0758 33 1 -0.4939 -5.6757 -1.1932 34 1 3.9379 -3.5344 0.3766 35 1 3.0228 -2.7571 1.6865 36 1 2.4309 -4.8841 2.6578 37 1 4.1749 -4.9701 2.2929 38 1 2.8912 -6.6097 -1.5983 39 1 2.4710 -8.2932 -2.0449 40 1 5.2048 -6.9081 -2.2190 41 1 4.3580 -7.8551 -3.4845 42 1 6.2584 -9.0648 -2.0062 43 1 4.7279 -9.9358 -2.3333 44 1 4.1436 -10.9458 -0.7347 45 1 3.6274 -9.9167 1.9832 46 1 2.6572 -11.0926 1.0408 47 1 1.8903 -8.5040 1.0885 48 1 1.8601 -9.3901 -0.4714 49 1 1.6340 -6.8593 -0.4619 50 1 0.8930 -6.5098 1.1174 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001580055176.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:26:20 Heat of formation + Delta-G solvation = -29.175088 kcal Electronic energy + Delta-G solvation = -31072.735070 eV Core-core repulsion = 27255.816604 eV Total energy + Delta-G solvation = -3816.918466 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.189 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.30862 -40.32362 -39.10696 -37.10328 -35.47656 -35.26469 -33.99259 -32.21318 -31.71733 -30.31508 -28.56382 -27.25349 -27.09173 -26.49252 -24.64871 -23.20140 -22.43762 -22.19066 -21.71237 -20.52446 -19.29891 -18.93213 -17.73890 -17.58870 -17.17542 -17.02529 -16.56944 -16.22116 -15.85064 -15.52338 -15.24788 -15.12292 -14.98899 -14.79603 -14.41296 -14.24228 -14.19678 -13.90307 -13.61633 -13.43953 -13.24676 -13.11122 -12.92084 -12.80775 -12.66171 -12.59277 -12.31757 -12.21010 -12.13019 -12.00723 -11.93386 -11.72154 -11.69901 -11.48345 -11.41605 -11.09085 -11.02491 -10.72175 -9.71968 -9.53281 -9.17930 -9.05166 -8.61389 -6.33018 0.98315 1.05978 1.35457 1.45053 1.50438 1.54290 1.95028 2.18303 2.72878 3.04183 3.38012 3.43895 3.66166 3.74379 3.85146 3.98165 4.08771 4.14436 4.21081 4.22893 4.26590 4.35498 4.42218 4.43317 4.52351 4.53679 4.57871 4.64196 4.69011 4.77333 4.86762 4.89419 4.91100 4.97429 5.01648 5.04979 5.10621 5.11321 5.13929 5.20566 5.22825 5.32929 5.38791 5.40288 5.56020 5.76022 5.77805 5.99260 6.16750 6.19236 6.32502 6.50400 6.55873 6.72834 6.96529 7.06608 7.09741 8.33525 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.018703 B = 0.003247 C = 0.003115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.726027 B = 8621.819243 C = 8985.815409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.038 3.962 3 Si 0.972 3.028 4 H -0.264 1.264 5 H -0.268 1.268 6 H -0.261 1.261 7 C -0.493 4.493 8 H 0.072 0.928 9 C 0.079 3.921 10 C -0.193 4.193 11 C -0.110 4.110 12 C -0.225 4.225 13 C -0.080 4.080 14 C -0.190 4.190 15 C -0.059 4.059 16 C 0.118 3.882 17 N -0.602 5.602 18 C 0.532 3.468 19 O -0.585 6.585 20 C -0.107 4.107 21 C -0.117 4.117 22 C -0.125 4.125 23 C -0.118 4.118 24 C 0.087 3.913 25 H 0.073 0.927 26 N -0.672 5.672 27 C 0.045 3.955 28 C -0.143 4.143 29 C 0.153 3.847 30 H 0.286 0.714 31 H 0.097 0.903 32 H 0.110 0.890 33 H 0.127 0.873 34 H 0.039 0.961 35 H 0.067 0.933 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.059 0.941 39 H 0.110 0.890 40 H 0.042 0.958 41 H 0.092 0.908 42 H 0.070 0.930 43 H 0.098 0.902 44 H 0.351 0.649 45 H 0.057 0.943 46 H 0.106 0.894 47 H 0.076 0.924 48 H 0.111 0.889 49 H 0.120 0.880 50 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.600 -17.408 -3.014 17.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.177 4.177 3 Si 0.794 3.206 4 H -0.189 1.189 5 H -0.192 1.192 6 H -0.186 1.186 7 C -0.523 4.523 8 H 0.091 0.909 9 C 0.077 3.923 10 C -0.213 4.213 11 C -0.128 4.128 12 C -0.244 4.244 13 C -0.080 4.080 14 C -0.191 4.191 15 C -0.096 4.096 16 C -0.005 4.005 17 N -0.333 5.333 18 C 0.321 3.679 19 O -0.465 6.465 20 C -0.111 4.111 21 C -0.154 4.154 22 C -0.163 4.163 23 C -0.156 4.156 24 C -0.023 4.023 25 H 0.091 0.909 26 N -0.301 5.301 27 C -0.084 4.084 28 C -0.181 4.181 29 C 0.031 3.969 30 H 0.096 0.904 31 H 0.115 0.885 32 H 0.128 0.872 33 H 0.145 0.855 34 H 0.057 0.943 35 H 0.085 0.915 36 H 0.098 0.902 37 H 0.101 0.899 38 H 0.077 0.923 39 H 0.128 0.872 40 H 0.061 0.939 41 H 0.110 0.890 42 H 0.089 0.911 43 H 0.116 0.884 44 H 0.170 0.830 45 H 0.075 0.925 46 H 0.124 0.876 47 H 0.094 0.906 48 H 0.129 0.871 49 H 0.137 0.863 50 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 2.501 -17.342 -2.213 17.661 hybrid contribution -0.436 2.179 -0.328 2.246 sum 2.065 -15.163 -2.540 15.513 Atomic orbital electron populations 1.69862 1.08735 1.30263 1.36287 1.26628 0.95435 1.04089 0.91516 0.85396 0.78906 0.76443 0.79883 1.18862 1.19202 1.18566 1.19754 0.97273 0.92141 1.43097 0.90947 1.17952 0.92197 0.92548 0.89570 1.21242 1.00124 0.97214 1.02711 1.20885 0.98946 0.93138 0.99829 1.20583 1.00006 0.97339 1.06507 1.19528 0.96233 0.93605 0.98662 1.19560 1.00704 0.93156 1.05701 1.20362 0.94988 0.97178 0.97117 1.21678 1.02218 0.84430 0.92154 1.48062 1.13312 1.25162 1.46715 1.20721 0.82952 0.83318 0.80870 1.90612 1.24663 1.77258 1.53982 1.22482 0.99377 0.93719 0.95550 1.22719 0.99132 1.02003 0.91546 1.22519 0.95713 0.97323 1.00710 1.22671 1.01618 0.98498 0.92830 1.22846 0.95318 0.87451 0.96712 0.90865 1.62613 1.35392 1.12191 1.19902 1.23115 0.90714 0.98204 0.96414 1.23401 0.96287 0.96267 1.02194 1.20884 0.82186 0.95031 0.98759 0.90354 0.88508 0.87193 0.85484 0.94282 0.91507 0.90217 0.89915 0.92277 0.87185 0.93901 0.88950 0.91141 0.88370 0.83016 0.92476 0.87572 0.90572 0.87111 0.86270 0.89566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -42.88 10.88 21.83 0.24 -42.64 16 2 C 0.04 1.90 5.17 85.26 0.44 2.35 16 3 Si 0.97 38.62 29.59 68.60 2.03 40.65 16 4 H -0.26 -10.38 7.11 99.48 0.71 -9.68 16 5 H -0.27 -10.05 7.11 99.48 0.71 -9.35 16 6 H -0.26 -10.12 7.11 99.48 0.71 -9.42 16 7 C -0.49 -26.17 8.04 23.46 0.19 -25.99 16 8 H 0.07 3.77 6.84 -2.91 -0.02 3.75 16 9 C 0.08 4.16 5.58 -21.19 -0.12 4.04 16 10 C -0.19 -9.91 8.66 22.66 0.20 -9.71 16 11 C -0.11 -4.76 10.03 22.15 0.22 -4.54 16 12 C -0.22 -8.57 9.63 22.55 0.22 -8.35 16 13 C -0.08 -3.10 5.82 -19.84 -0.12 -3.22 16 14 C -0.19 -8.72 5.82 -19.40 -0.11 -8.84 16 15 C -0.06 -2.47 4.95 29.90 0.15 -2.32 16 16 C 0.12 4.21 6.48 86.33 0.56 4.77 16 17 N -0.60 -19.70 2.89 -822.97 -2.38 -22.08 16 18 C 0.53 17.39 6.56 87.66 0.58 17.96 16 19 O -0.58 -23.47 14.94 -3.02 -0.05 -23.51 16 20 C -0.11 -2.49 0.46 -51.50 -0.02 -2.51 16 21 C -0.12 -2.45 4.49 31.62 0.14 -2.31 16 22 C -0.12 -2.54 6.90 31.86 0.22 -2.32 16 23 C -0.12 -2.11 6.46 31.65 0.20 -1.90 16 24 C 0.09 2.01 3.86 45.71 0.18 2.19 16 25 H 0.07 2.29 6.71 -2.39 -0.02 2.28 16 26 N -0.67 -12.36 7.40 -476.95 -3.53 -15.89 16 27 C 0.04 0.76 7.55 86.66 0.65 1.41 16 28 C -0.14 -2.42 5.13 31.75 0.16 -2.26 16 29 C 0.15 4.50 3.91 85.65 0.33 4.84 16 30 H 0.29 13.55 8.30 -92.71 -0.77 12.78 16 31 H 0.10 5.28 6.15 -2.91 -0.02 5.27 16 32 H 0.11 4.18 8.06 -2.91 -0.02 4.16 16 33 H 0.13 3.81 8.05 -2.91 -0.02 3.78 16 34 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.07 2.93 7.04 -2.39 -0.02 2.91 16 36 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 37 H 0.08 3.00 7.08 -2.38 -0.02 2.98 16 38 H 0.06 1.60 6.07 -2.39 -0.01 1.58 16 39 H 0.11 1.62 7.21 -2.39 -0.02 1.60 16 40 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.09 1.50 8.14 -2.38 -0.02 1.48 16 42 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 43 H 0.10 1.20 7.23 -2.39 -0.02 1.18 16 44 H 0.35 4.55 7.76 -89.69 -0.70 3.86 16 45 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 46 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 47 H 0.08 1.39 6.47 -2.39 -0.02 1.37 16 48 H 0.11 1.26 7.22 -2.38 -0.02 1.25 16 49 H 0.12 2.88 3.76 -2.39 -0.01 2.87 16 50 H 0.09 2.24 7.94 -2.38 -0.02 2.22 16 Total: -1.00 -64.91 371.39 0.66 -64.25 By element: Atomic # 1 Polarization: 35.66 SS G_CDS: 0.28 Total: 35.94 kcal Atomic # 6 Polarization: -40.79 SS G_CDS: 4.07 Total: -36.72 kcal Atomic # 7 Polarization: -74.94 SS G_CDS: -5.67 Total: -80.61 kcal Atomic # 8 Polarization: -23.47 SS G_CDS: -0.05 Total: -23.51 kcal Atomic # 14 Polarization: 38.62 SS G_CDS: 2.03 Total: 40.65 kcal Total: -64.91 0.66 -64.25 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580055176.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.071 kcal (2) G-P(sol) polarization free energy of solvation -64.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds