Wall clock time and date at job start Tue Mar 31 2020 23:58:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42894 * 114.00388 * 2 1 4 4 C 1.53008 * 109.47191 * 179.97438 * 3 2 1 5 5 C 1.52995 * 109.46877 * 184.37199 * 4 3 2 6 6 N 1.46501 * 109.46488 * 303.04547 * 5 4 3 7 7 C 1.34778 * 119.99550 * 302.90323 * 6 5 4 8 8 O 1.21277 * 120.00054 * 355.29329 * 7 6 5 9 9 C 1.50701 * 119.99651 * 175.29337 * 7 6 5 10 10 H 1.09004 * 115.54909 * 34.33041 * 9 7 6 11 11 C 1.53006 * 117.49824 * 248.62257 * 9 7 6 12 12 C 1.52997 * 117.49852 * 180.02562 * 9 7 6 13 13 H 1.08994 * 117.49930 * 359.97438 * 12 9 7 14 14 C 1.50703 * 117.49597 * 214.97699 * 12 9 7 15 15 O 1.20817 * 120.00202 * 0.02562 * 14 12 9 16 16 O 1.34233 * 119.99815 * 179.97438 * 14 12 9 17 17 C 1.53043 * 109.45017 * 63.01606 * 5 4 3 18 18 C 1.53185 * 109.31340 * 181.37639 * 17 5 4 19 19 N 1.46932 * 108.77652 * 305.36098 * 18 17 5 20 20 C 1.36934 * 120.63247 * 233.63112 * 19 18 17 21 21 H 1.08010 * 119.99888 * 31.74801 * 20 19 18 22 22 C 1.38806 * 120.00215 * 211.74464 * 20 19 18 23 23 N 1.31623 * 119.99682 * 10.86471 * 22 20 19 24 24 Si 1.86798 * 120.00233 * 190.85880 * 22 20 19 25 25 H 1.48498 * 109.47015 * 0.02562 * 24 22 20 26 26 H 1.48509 * 109.46880 * 119.99840 * 24 22 20 27 27 H 1.48500 * 109.47362 * 240.00148 * 24 22 20 28 28 C 1.46924 * 118.73436 * 53.60726 * 19 18 17 29 29 C 1.53048 * 109.45836 * 183.07118 * 5 4 3 30 30 H 1.09001 * 109.46881 * 300.00127 * 1 2 3 31 31 H 1.09005 * 109.46744 * 59.99658 * 1 2 3 32 32 H 1.09002 * 109.47325 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.46843 * 60.00400 * 3 2 1 34 34 H 1.08995 * 109.47669 * 299.99991 * 3 2 1 35 35 H 1.08999 * 109.46415 * 64.37598 * 4 3 2 36 36 H 1.08999 * 109.47090 * 304.37425 * 4 3 2 37 37 H 0.96998 * 119.99719 * 123.17752 * 6 5 4 38 38 H 1.09000 * 117.49513 * 0.02562 * 11 9 7 39 39 H 1.08998 * 117.49391 * 145.02160 * 11 9 7 40 40 H 0.96700 * 116.99788 * 180.02562 * 16 14 12 41 41 H 1.09004 * 109.49321 * 301.32522 * 17 5 4 42 42 H 1.08996 * 109.49823 * 61.42199 * 17 5 4 43 43 H 1.09000 * 109.58472 * 185.57750 * 18 17 5 44 44 H 1.09006 * 109.58878 * 65.14744 * 18 17 5 45 45 H 0.97002 * 119.99797 * 180.02562 * 23 22 20 46 46 H 1.09004 * 109.58258 * 186.60533 * 28 19 18 47 47 H 1.09004 * 109.58426 * 66.18275 * 28 19 18 48 48 H 1.08998 * 109.49496 * 298.58559 * 29 5 4 49 49 H 1.08997 * 109.49358 * 58.64716 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5356 1.1845 0.0006 5 6 4.1575 2.5780 0.1106 6 7 3.6753 3.4160 -0.9900 7 6 3.8603 3.0243 -2.2663 8 8 4.5000 2.0223 -2.5064 9 6 3.2722 3.8314 -3.3949 10 1 3.2413 4.9094 -3.2356 11 6 2.1287 3.2016 -4.1928 12 6 3.5169 3.3344 -4.8210 13 1 4.1035 2.4239 -4.9430 14 6 3.6966 4.3727 -5.8985 15 8 3.6455 5.5473 -5.6201 16 8 3.9146 3.9925 -7.1672 17 6 3.7582 3.2103 1.4458 18 6 4.3540 4.6186 1.5378 19 7 5.8047 4.5334 1.3204 20 6 6.6789 5.0681 2.2288 21 1 6.4227 5.0878 3.2778 22 6 7.8943 5.5847 1.8013 23 7 8.1201 5.7583 0.5163 24 14 9.2093 6.0336 3.0498 25 1 8.7115 5.7447 4.4186 26 1 10.4329 5.2334 2.7893 27 1 9.5291 7.4791 2.9338 28 6 6.2994 3.8632 0.1102 29 6 5.6818 2.4635 0.0342 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.6888 1.8462 0.8900 34 1 1.6888 1.8464 -0.8899 35 1 3.8629 0.7125 -0.9258 36 1 3.8516 0.5775 0.8491 37 1 3.2264 4.2547 -0.8002 38 1 1.8015 2.2037 -3.9011 39 1 1.3451 3.8652 -4.5585 40 1 4.0241 4.6945 -7.8232 41 1 2.6717 3.2702 1.5095 42 1 4.1381 2.6003 2.2653 43 1 4.1564 5.0351 2.5255 44 1 3.9069 5.2552 0.7742 45 1 8.9696 6.1189 0.2175 46 1 7.3855 3.7814 0.1559 47 1 6.0109 4.4382 -0.7697 48 1 6.0435 1.8604 0.8670 49 1 5.9644 1.9912 -0.9066 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001599220303.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:58:58 Heat of formation + Delta-G solvation = -123.241770 kcal Electronic energy + Delta-G solvation = -31575.565282 eV Core-core repulsion = 27311.425765 eV Total energy + Delta-G solvation = -4264.139517 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.88751 -40.16166 -38.24562 -37.52614 -36.52706 -35.72355 -34.52529 -32.07557 -31.45277 -30.13557 -28.91083 -26.60339 -26.14826 -24.90851 -24.08916 -23.15343 -22.09383 -21.27633 -20.47093 -19.89509 -18.78724 -18.48428 -17.51040 -16.99052 -16.48894 -16.28227 -15.99464 -15.80378 -15.18077 -14.93691 -14.73048 -14.67327 -14.15653 -14.00468 -13.85143 -13.43881 -13.17959 -13.08649 -12.74780 -12.59133 -12.48312 -12.34492 -11.79983 -11.70300 -11.53497 -11.43962 -11.15109 -11.10392 -11.00958 -10.89420 -10.79106 -10.74266 -10.71575 -10.35733 -10.25809 -10.00350 -9.79013 -9.77682 -9.46010 -9.15089 -8.64247 -8.47195 -6.60841 -5.77484 -3.26617 1.84991 2.51928 2.73117 3.36917 3.41997 3.44695 3.46338 3.63012 3.76076 4.32372 4.48447 4.51498 4.71767 4.98383 5.06465 5.09982 5.13867 5.21759 5.26293 5.32224 5.34068 5.37521 5.45206 5.48109 5.52544 5.60491 5.66755 5.73628 5.76696 5.98886 6.11426 6.16691 6.27105 6.34104 6.38768 6.47982 6.64358 6.68551 6.78642 6.89085 7.03731 7.16072 7.42608 7.69697 7.73371 7.79592 7.82712 8.46923 8.48339 9.22873 9.84117 10.42054 11.29970 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.008307 B = 0.004126 C = 0.002942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3370.036126 B = 6784.004999 C = 9515.604326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.393 6.393 3 C 0.066 3.934 4 C -0.129 4.129 5 C 0.194 3.806 6 N -0.704 5.704 7 C 0.547 3.453 8 O -0.532 6.532 9 C -0.153 4.153 10 H 0.138 0.862 11 C -0.118 4.118 12 C -0.137 4.137 13 H 0.150 0.850 14 C 0.511 3.489 15 O -0.511 6.511 16 O -0.511 6.511 17 C -0.141 4.141 18 C 0.145 3.855 19 N -0.590 5.590 20 C -0.255 4.255 21 H 0.064 0.936 22 C 0.006 3.994 23 N -0.901 5.901 24 Si 0.903 3.097 25 H -0.277 1.277 26 H -0.289 1.289 27 H -0.290 1.290 28 C 0.179 3.821 29 C -0.151 4.151 30 H 0.039 0.961 31 H 0.037 0.963 32 H 0.082 0.918 33 H 0.050 0.950 34 H 0.044 0.956 35 H 0.089 0.911 36 H 0.076 0.924 37 H 0.400 0.600 38 H 0.116 0.884 39 H 0.110 0.890 40 H 0.412 0.588 41 H 0.057 0.943 42 H 0.077 0.923 43 H 0.056 0.944 44 H 0.014 0.986 45 H 0.253 0.747 46 H 0.085 0.915 47 H 0.018 0.982 48 H 0.061 0.939 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.309 -7.022 -8.879 19.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.312 6.312 3 C -0.011 4.011 4 C -0.168 4.168 5 C 0.109 3.891 6 N -0.355 5.355 7 C 0.332 3.668 8 O -0.410 6.410 9 C -0.174 4.174 10 H 0.156 0.844 11 C -0.156 4.156 12 C -0.157 4.157 13 H 0.168 0.832 14 C 0.354 3.646 15 O -0.398 6.398 16 O -0.322 6.322 17 C -0.180 4.180 18 C 0.019 3.981 19 N -0.313 5.313 20 C -0.385 4.385 21 H 0.081 0.919 22 C -0.193 4.193 23 N -0.545 5.545 24 Si 0.733 3.267 25 H -0.202 1.202 26 H -0.216 1.216 27 H -0.217 1.217 28 C 0.053 3.947 29 C -0.190 4.190 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.100 0.900 33 H 0.068 0.932 34 H 0.062 0.938 35 H 0.108 0.892 36 H 0.094 0.906 37 H 0.236 0.764 38 H 0.134 0.866 39 H 0.129 0.871 40 H 0.271 0.729 41 H 0.075 0.925 42 H 0.095 0.905 43 H 0.075 0.925 44 H 0.032 0.968 45 H 0.063 0.937 46 H 0.103 0.897 47 H 0.036 0.964 48 H 0.079 0.921 49 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -15.646 -7.820 -8.715 19.542 hybrid contribution 0.462 1.553 0.180 1.630 sum -15.184 -6.268 -8.535 18.512 Atomic orbital electron populations 1.22693 0.81641 1.02357 0.99727 1.87885 1.19186 1.28748 1.95377 1.22606 0.94666 0.83972 0.99808 1.21979 0.92364 0.97715 1.04709 1.20237 0.95296 0.88026 0.85519 1.45998 1.59635 1.24892 1.04958 1.19219 0.79739 0.84724 0.83109 1.90649 1.39672 1.26660 1.84000 1.22396 1.03022 1.02014 0.89979 0.84392 1.23062 0.89753 1.03484 0.99291 1.21572 1.03759 1.00489 0.89865 0.83195 1.22243 0.71798 0.88287 0.82306 1.90749 1.46684 1.19780 1.82635 1.84501 1.83590 1.45151 1.18999 1.22420 0.99252 1.00576 0.95761 1.20876 0.86580 0.91978 0.98708 1.44027 0.99064 1.64437 1.23794 1.19190 0.97882 1.32947 0.88502 0.91858 1.25170 0.99902 0.98372 0.95828 1.69997 1.23885 1.47797 1.12852 0.86222 0.81900 0.77771 0.80847 1.20250 1.21580 1.21690 1.20690 0.99430 0.86818 0.87713 1.22604 0.92487 1.02042 1.01905 0.94270 0.94392 0.89959 0.93234 0.93795 0.89200 0.90588 0.76444 0.86605 0.87125 0.72933 0.92471 0.90467 0.92542 0.96812 0.93665 0.89701 0.96433 0.92071 0.90928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 101.05 1.11 1.42 16 2 O -0.39 -5.22 10.70 -35.23 -0.38 -5.60 16 3 C 0.07 0.83 5.50 37.16 0.20 1.04 16 4 C -0.13 -1.91 4.32 -26.73 -0.12 -2.03 16 5 C 0.19 3.09 0.35 -131.77 -0.05 3.04 16 6 N -0.70 -10.23 3.35 -47.56 -0.16 -10.39 16 7 C 0.55 8.15 6.79 -10.98 -0.07 8.08 16 8 O -0.53 -9.39 12.53 5.56 0.07 -9.33 16 9 C -0.15 -1.86 5.70 -91.77 -0.52 -2.38 16 10 H 0.14 1.70 7.67 -51.93 -0.40 1.31 16 11 C -0.12 -1.07 9.94 -26.75 -0.27 -1.33 16 12 C -0.14 -1.56 5.81 -91.80 -0.53 -2.10 16 13 H 0.15 1.77 7.67 -51.93 -0.40 1.38 16 14 C 0.51 6.01 8.11 36.01 0.29 6.31 16 15 O -0.51 -7.51 17.02 -18.74 -0.32 -7.83 16 16 O -0.51 -4.59 13.42 -39.27 -0.53 -5.12 16 17 C -0.14 -2.18 4.72 -26.61 -0.13 -2.30 16 18 C 0.15 2.78 6.24 -3.71 -0.02 2.76 16 19 N -0.59 -14.21 2.98 -172.32 -0.51 -14.72 16 20 C -0.26 -6.87 9.57 -15.06 -0.14 -7.02 16 21 H 0.06 1.68 7.85 -52.48 -0.41 1.26 16 22 C 0.01 0.17 5.04 -17.43 -0.09 0.09 16 23 N -0.90 -26.21 11.09 55.49 0.62 -25.59 16 24 Si 0.90 21.66 29.57 -169.99 -5.03 16.63 16 25 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 26 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 27 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 28 C 0.18 4.26 4.99 -3.72 -0.02 4.24 16 29 C -0.15 -2.96 4.71 -26.61 -0.13 -3.09 16 30 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.05 0.58 6.27 -51.93 -0.33 0.26 16 34 H 0.04 0.53 7.46 -51.93 -0.39 0.14 16 35 H 0.09 1.50 6.22 -51.93 -0.32 1.18 16 36 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.40 5.26 7.18 -40.82 -0.29 4.97 16 38 H 0.12 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.41 1.87 9.10 45.56 0.41 2.28 16 41 H 0.06 0.73 6.35 -51.93 -0.33 0.40 16 42 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 43 H 0.06 1.07 7.93 -51.93 -0.41 0.66 16 44 H 0.01 0.26 6.88 -51.93 -0.36 -0.10 16 45 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 46 H 0.08 2.33 6.14 -51.93 -0.32 2.02 16 47 H 0.02 0.45 7.74 -51.93 -0.40 0.04 16 48 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 49 H 0.07 1.49 6.26 -51.93 -0.33 1.16 16 LS Contribution 388.97 15.07 5.86 5.86 Total: -1.00 -33.95 388.97 -7.63 -41.58 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: -6.78 Total: 7.76 kcal Atomic # 6 Polarization: 7.20 SS G_CDS: -0.47 Total: 6.73 kcal Atomic # 7 Polarization: -50.64 SS G_CDS: -0.06 Total: -50.70 kcal Atomic # 8 Polarization: -26.71 SS G_CDS: -1.15 Total: -27.87 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.03 Total: 16.63 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -33.95 -7.63 -41.58 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599220303.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.658 kcal (2) G-P(sol) polarization free energy of solvation -33.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds