Wall clock time and date at job start Tue Mar 31 2020 23:58:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42894 * 114.00388 * 2 1 4 4 C 1.53008 * 109.47191 * 179.97438 * 3 2 1 5 5 C 1.52995 * 109.46877 * 184.37199 * 4 3 2 6 6 N 1.46501 * 109.46488 * 303.04547 * 5 4 3 7 7 C 1.34778 * 119.99550 * 302.90323 * 6 5 4 8 8 O 1.21277 * 120.00054 * 355.29329 * 7 6 5 9 9 C 1.50701 * 119.99651 * 175.29337 * 7 6 5 10 10 H 1.09004 * 115.54909 * 34.33041 * 9 7 6 11 11 C 1.53006 * 117.49824 * 248.62257 * 9 7 6 12 12 C 1.52997 * 117.49852 * 180.02562 * 9 7 6 13 13 H 1.08994 * 117.49930 * 359.97438 * 12 9 7 14 14 C 1.50703 * 117.49597 * 214.97699 * 12 9 7 15 15 O 1.20817 * 120.00202 * 0.02562 * 14 12 9 16 16 O 1.34233 * 119.99815 * 179.97438 * 14 12 9 17 17 C 1.53043 * 109.45017 * 63.01606 * 5 4 3 18 18 C 1.53185 * 109.31340 * 181.37639 * 17 5 4 19 19 N 1.46932 * 108.77652 * 305.36098 * 18 17 5 20 20 C 1.36934 * 120.63247 * 233.63112 * 19 18 17 21 21 H 1.08010 * 119.99888 * 31.74801 * 20 19 18 22 22 C 1.38806 * 120.00215 * 211.74464 * 20 19 18 23 23 N 1.31623 * 119.99682 * 10.86471 * 22 20 19 24 24 Si 1.86798 * 120.00233 * 190.85880 * 22 20 19 25 25 H 1.48498 * 109.47015 * 0.02562 * 24 22 20 26 26 H 1.48509 * 109.46880 * 119.99840 * 24 22 20 27 27 H 1.48500 * 109.47362 * 240.00148 * 24 22 20 28 28 C 1.46924 * 118.73436 * 53.60726 * 19 18 17 29 29 C 1.53048 * 109.45836 * 183.07118 * 5 4 3 30 30 H 1.09001 * 109.46881 * 300.00127 * 1 2 3 31 31 H 1.09005 * 109.46744 * 59.99658 * 1 2 3 32 32 H 1.09002 * 109.47325 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.46843 * 60.00400 * 3 2 1 34 34 H 1.08995 * 109.47669 * 299.99991 * 3 2 1 35 35 H 1.08999 * 109.46415 * 64.37598 * 4 3 2 36 36 H 1.08999 * 109.47090 * 304.37425 * 4 3 2 37 37 H 0.96998 * 119.99719 * 123.17752 * 6 5 4 38 38 H 1.09000 * 117.49513 * 0.02562 * 11 9 7 39 39 H 1.08998 * 117.49391 * 145.02160 * 11 9 7 40 40 H 0.96700 * 116.99788 * 180.02562 * 16 14 12 41 41 H 1.09004 * 109.49321 * 301.32522 * 17 5 4 42 42 H 1.08996 * 109.49823 * 61.42199 * 17 5 4 43 43 H 1.09000 * 109.58472 * 185.57750 * 18 17 5 44 44 H 1.09006 * 109.58878 * 65.14744 * 18 17 5 45 45 H 0.97002 * 119.99797 * 180.02562 * 23 22 20 46 46 H 1.09004 * 109.58258 * 186.60533 * 28 19 18 47 47 H 1.09004 * 109.58426 * 66.18275 * 28 19 18 48 48 H 1.08998 * 109.49496 * 298.58559 * 29 5 4 49 49 H 1.08997 * 109.49358 * 58.64716 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5356 1.1845 0.0006 5 6 4.1575 2.5780 0.1106 6 7 3.6753 3.4160 -0.9900 7 6 3.8603 3.0243 -2.2663 8 8 4.5000 2.0223 -2.5064 9 6 3.2722 3.8314 -3.3949 10 1 3.2413 4.9094 -3.2356 11 6 2.1287 3.2016 -4.1928 12 6 3.5169 3.3344 -4.8210 13 1 4.1035 2.4239 -4.9430 14 6 3.6966 4.3727 -5.8985 15 8 3.6455 5.5473 -5.6201 16 8 3.9146 3.9925 -7.1672 17 6 3.7582 3.2103 1.4458 18 6 4.3540 4.6186 1.5378 19 7 5.8047 4.5334 1.3204 20 6 6.6789 5.0681 2.2288 21 1 6.4227 5.0878 3.2778 22 6 7.8943 5.5847 1.8013 23 7 8.1201 5.7583 0.5163 24 14 9.2093 6.0336 3.0498 25 1 8.7115 5.7447 4.4186 26 1 10.4329 5.2334 2.7893 27 1 9.5291 7.4791 2.9338 28 6 6.2994 3.8632 0.1102 29 6 5.6818 2.4635 0.0342 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.6888 1.8462 0.8900 34 1 1.6888 1.8464 -0.8899 35 1 3.8629 0.7125 -0.9258 36 1 3.8516 0.5775 0.8491 37 1 3.2264 4.2547 -0.8002 38 1 1.8015 2.2037 -3.9011 39 1 1.3451 3.8652 -4.5585 40 1 4.0241 4.6945 -7.8232 41 1 2.6717 3.2702 1.5095 42 1 4.1381 2.6003 2.2653 43 1 4.1564 5.0351 2.5255 44 1 3.9069 5.2552 0.7742 45 1 8.9696 6.1189 0.2175 46 1 7.3855 3.7814 0.1559 47 1 6.0109 4.4382 -0.7697 48 1 6.0435 1.8604 0.8670 49 1 5.9644 1.9912 -0.9066 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001599220303.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:58:57 Heat of formation + Delta-G solvation = -147.167208 kcal Electronic energy + Delta-G solvation = -31576.602767 eV Core-core repulsion = 27311.425765 eV Total energy + Delta-G solvation = -4265.177002 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.96181 -41.26293 -39.39525 -38.58251 -37.51292 -36.76742 -36.10858 -33.65532 -32.90830 -31.77928 -30.39602 -27.72215 -27.06796 -26.35772 -25.13891 -24.60184 -23.62946 -22.26437 -21.90246 -21.01223 -20.18119 -19.44860 -18.77841 -18.45684 -17.45097 -17.42541 -16.91503 -16.82251 -16.73002 -16.35664 -15.91363 -15.69394 -15.64227 -15.27343 -15.15968 -14.94673 -14.74594 -14.32224 -13.95756 -13.82557 -13.60366 -13.32236 -13.19757 -13.01743 -12.77280 -12.70188 -12.65772 -12.63546 -12.23482 -12.17743 -12.03695 -11.95955 -11.91859 -11.79316 -11.75154 -11.67506 -11.30562 -11.26904 -10.61184 -10.55488 -10.40708 -9.94620 -8.59639 -7.85507 -5.36810 0.94551 1.44775 1.46815 1.49238 1.56717 1.82103 2.35206 2.50656 2.69607 2.85592 3.30968 3.41261 3.59684 3.72201 3.73626 3.89759 4.02412 4.13559 4.15543 4.22946 4.31441 4.40093 4.47920 4.56680 4.59406 4.60657 4.63426 4.70070 4.76084 4.82823 4.88426 4.90580 4.93788 5.03382 5.07667 5.14348 5.19009 5.30509 5.36952 5.51249 5.52709 5.64406 5.67940 5.78648 6.31097 6.42031 6.64322 6.93723 7.16961 7.30720 7.87878 8.40047 9.19617 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.008307 B = 0.004126 C = 0.002942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3370.036126 B = 6784.004999 C = 9515.604326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.419 6.419 3 C 0.073 3.927 4 C -0.120 4.120 5 C 0.202 3.798 6 N -0.700 5.700 7 C 0.544 3.456 8 O -0.564 6.564 9 C -0.168 4.168 10 H 0.136 0.864 11 C -0.080 4.080 12 C -0.150 4.150 13 H 0.143 0.857 14 C 0.518 3.482 15 O -0.546 6.546 16 O -0.504 6.504 17 C -0.126 4.126 18 C 0.140 3.860 19 N -0.608 5.608 20 C -0.259 4.259 21 H 0.069 0.931 22 C -0.050 4.050 23 N -0.937 5.937 24 Si 0.965 3.035 25 H -0.263 1.263 26 H -0.295 1.295 27 H -0.293 1.293 28 C 0.195 3.805 29 C -0.139 4.139 30 H 0.051 0.949 31 H 0.050 0.950 32 H 0.094 0.906 33 H 0.065 0.935 34 H 0.052 0.948 35 H 0.068 0.932 36 H 0.073 0.927 37 H 0.409 0.591 38 H 0.129 0.871 39 H 0.135 0.865 40 H 0.431 0.569 41 H 0.099 0.901 42 H 0.073 0.927 43 H 0.060 0.940 44 H 0.024 0.976 45 H 0.246 0.754 46 H 0.039 0.961 47 H -0.006 1.006 48 H 0.054 0.946 49 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.343 -7.487 -8.451 22.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.339 6.339 3 C -0.003 4.003 4 C -0.158 4.158 5 C 0.117 3.883 6 N -0.351 5.351 7 C 0.331 3.669 8 O -0.444 6.444 9 C -0.189 4.189 10 H 0.153 0.847 11 C -0.117 4.117 12 C -0.170 4.170 13 H 0.161 0.839 14 C 0.362 3.638 15 O -0.436 6.436 16 O -0.318 6.318 17 C -0.165 4.165 18 C 0.015 3.985 19 N -0.331 5.331 20 C -0.390 4.390 21 H 0.087 0.913 22 C -0.245 4.245 23 N -0.583 5.583 24 Si 0.793 3.207 25 H -0.187 1.187 26 H -0.222 1.222 27 H -0.220 1.220 28 C 0.069 3.931 29 C -0.179 4.179 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.112 0.888 33 H 0.083 0.917 34 H 0.071 0.929 35 H 0.087 0.913 36 H 0.091 0.909 37 H 0.246 0.754 38 H 0.147 0.853 39 H 0.154 0.846 40 H 0.294 0.706 41 H 0.117 0.883 42 H 0.092 0.908 43 H 0.079 0.921 44 H 0.042 0.958 45 H 0.056 0.944 46 H 0.058 0.942 47 H 0.012 0.988 48 H 0.073 0.927 49 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -18.731 -8.287 -8.290 22.097 hybrid contribution 1.386 1.652 -0.018 2.157 sum -17.346 -6.635 -8.308 20.345 Atomic orbital electron populations 1.22918 0.79518 1.03673 1.00925 1.87842 1.21514 1.28904 1.95600 1.22481 0.92635 0.84249 1.00923 1.21782 0.94458 0.96136 1.03466 1.20019 0.92399 0.89447 0.86480 1.45928 1.59435 1.25058 1.04700 1.19675 0.79070 0.84439 0.83681 1.90639 1.41008 1.28251 1.84474 1.22262 1.05783 1.01477 0.89359 0.84665 1.23232 0.88710 1.04146 0.95628 1.21614 1.05955 1.00036 0.89366 0.83945 1.22253 0.70888 0.87650 0.83003 1.90740 1.48562 1.21053 1.83291 1.84461 1.82795 1.46026 1.18477 1.22286 1.01495 0.97710 0.95044 1.21091 0.83670 0.94530 0.99215 1.44240 1.01149 1.64580 1.23143 1.19556 0.98496 1.31612 0.89305 0.91348 1.25904 1.02103 0.99202 0.97318 1.70173 1.23946 1.49442 1.14708 0.85239 0.79088 0.76908 0.79420 1.18674 1.22225 1.21959 1.20295 0.96981 0.88747 0.87042 1.22385 0.95755 0.98857 1.00885 0.93042 0.93147 0.88751 0.91665 0.92945 0.91324 0.90866 0.75426 0.85299 0.84650 0.70641 0.88258 0.90815 0.92101 0.95775 0.94443 0.94226 0.98827 0.92711 0.92248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 113.37 1.25 1.64 16 2 O -0.42 -10.00 10.70 -148.98 -1.59 -11.60 16 3 C 0.07 1.64 5.50 71.98 0.40 2.03 16 4 C -0.12 -3.39 4.32 30.60 0.13 -3.25 16 5 C 0.20 6.24 0.35 3.63 0.00 6.24 16 6 N -0.70 -19.65 3.35 -422.79 -1.42 -21.07 16 7 C 0.54 16.06 6.79 87.66 0.60 16.66 16 8 O -0.56 -20.22 12.53 -3.02 -0.04 -20.26 16 9 C -0.17 -3.91 5.70 -11.54 -0.07 -3.98 16 10 H 0.14 3.26 7.67 -2.38 -0.02 3.24 16 11 C -0.08 -1.23 9.94 30.58 0.30 -0.92 16 12 C -0.15 -3.28 5.81 -11.56 -0.07 -3.34 16 13 H 0.14 3.35 7.67 -2.39 -0.02 3.33 16 14 C 0.52 11.73 8.11 71.24 0.58 12.30 16 15 O -0.55 -15.80 17.02 21.99 0.37 -15.43 16 16 O -0.50 -8.33 13.42 -51.45 -0.69 -9.02 16 17 C -0.13 -3.61 4.72 30.67 0.14 -3.47 16 18 C 0.14 5.16 6.24 86.36 0.54 5.70 16 19 N -0.61 -29.57 2.98 -699.10 -2.09 -31.65 16 20 C -0.26 -14.07 9.57 84.03 0.80 -13.27 16 21 H 0.07 3.58 7.85 -2.91 -0.02 3.56 16 22 C -0.05 -2.82 5.04 84.86 0.43 -2.39 16 23 N -0.94 -56.68 11.09 21.65 0.24 -56.44 16 24 Si 0.96 45.39 29.57 68.60 2.03 47.42 16 25 H -0.26 -11.57 7.11 99.48 0.71 -10.87 16 26 H -0.30 -14.04 7.11 99.48 0.71 -13.34 16 27 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 28 C 0.20 9.70 4.99 86.36 0.43 10.13 16 29 C -0.14 -5.63 4.71 30.67 0.14 -5.49 16 30 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.05 0.64 8.14 -2.38 -0.02 0.62 16 32 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.07 1.25 6.27 -2.39 -0.01 1.23 16 34 H 0.05 1.09 7.46 -2.39 -0.02 1.07 16 35 H 0.07 2.27 6.22 -2.39 -0.01 2.26 16 36 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 37 H 0.41 10.05 7.18 -92.71 -0.67 9.38 16 38 H 0.13 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.14 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.43 3.23 9.10 -74.06 -0.67 2.56 16 41 H 0.10 2.08 6.35 -2.38 -0.02 2.06 16 42 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 43 H 0.06 2.18 7.93 -2.39 -0.02 2.17 16 44 H 0.02 0.86 6.88 -2.38 -0.02 0.84 16 45 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 46 H 0.04 2.31 6.14 -2.38 -0.01 2.29 16 47 H -0.01 -0.34 7.74 -2.39 -0.02 -0.36 16 48 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 49 H 0.06 2.56 6.26 -2.39 -0.01 2.54 16 Total: -1.00 -76.76 388.97 2.08 -74.68 By element: Atomic # 1 Polarization: 25.13 SS G_CDS: -0.35 Total: 24.78 kcal Atomic # 6 Polarization: 12.98 SS G_CDS: 5.61 Total: 18.59 kcal Atomic # 7 Polarization: -105.90 SS G_CDS: -3.26 Total: -109.16 kcal Atomic # 8 Polarization: -54.36 SS G_CDS: -1.95 Total: -56.31 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal Total: -76.76 2.08 -74.68 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599220303.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.485 kcal (2) G-P(sol) polarization free energy of solvation -76.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds