Wall clock time and date at job start Wed Apr 1 2020 00:07:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42897 * 114.00071 * 2 1 4 4 C 1.53003 * 109.47204 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.47111 * 65.00308 * 4 3 2 6 6 C 1.36932 * 119.99695 * 270.00122 * 5 4 3 7 7 H 1.08003 * 120.00198 * 141.79877 * 6 5 4 8 8 C 1.38811 * 119.99970 * 321.79806 * 6 5 4 9 9 N 1.31622 * 120.00479 * 339.27961 * 8 6 5 10 10 Si 1.86798 * 120.00215 * 159.28233 * 8 6 5 11 11 H 1.48500 * 109.47350 * 89.99795 * 10 8 6 12 12 H 1.48504 * 109.47354 * 209.99898 * 10 8 6 13 13 H 1.48501 * 109.47224 * 330.00200 * 10 8 6 14 14 C 1.46493 * 120.00190 * 89.99860 * 5 4 3 15 15 C 1.53045 * 109.46095 * 244.79123 * 14 5 4 16 16 C 1.53189 * 109.31510 * 178.61476 * 15 14 5 17 17 N 1.46923 * 108.77588 * 54.63358 * 16 15 14 18 18 C 1.34778 * 120.63100 * 126.36529 * 17 16 15 19 19 O 1.21283 * 119.99826 * 0.02562 * 18 17 16 20 20 C 1.50704 * 120.00148 * 179.97438 * 18 17 16 21 21 H 1.08996 * 115.55920 * 325.70694 * 20 18 17 22 22 C 1.53001 * 117.49320 * 111.39811 * 20 18 17 23 23 C 1.52992 * 59.99888 * 107.49199 * 22 20 18 24 24 H 1.09008 * 117.49882 * 252.50674 * 23 22 20 25 25 C 1.50703 * 117.50226 * 107.49244 * 23 22 20 26 26 O 1.20826 * 119.99415 * 291.38760 * 25 23 22 27 27 O 1.34221 * 120.00286 * 111.38730 * 25 23 22 28 28 C 1.46925 * 118.74089 * 306.64802 * 17 16 15 29 29 C 1.52763 * 109.01047 * 53.30265 * 28 17 16 30 30 H 1.08997 * 109.47036 * 60.00004 * 1 2 3 31 31 H 1.09001 * 109.46732 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47085 * 299.99915 * 1 2 3 33 33 H 1.09004 * 109.47397 * 59.99846 * 3 2 1 34 34 H 1.09002 * 109.47500 * 300.00171 * 3 2 1 35 35 H 1.08997 * 109.46763 * 304.99789 * 4 3 2 36 36 H 1.09000 * 109.46706 * 185.00141 * 4 3 2 37 37 H 0.96995 * 120.00605 * 179.97438 * 9 8 6 38 38 H 1.09005 * 109.46458 * 4.76147 * 14 5 4 39 39 H 1.09000 * 109.49777 * 58.66416 * 15 14 5 40 40 H 1.08999 * 109.52749 * 298.58457 * 15 14 5 41 41 H 1.09006 * 109.58797 * 294.84758 * 16 15 14 42 42 H 1.09003 * 109.59049 * 174.42451 * 16 15 14 43 43 H 1.08997 * 117.50113 * 359.97438 * 22 20 18 44 44 H 1.09003 * 117.49684 * 214.98359 * 22 20 18 45 45 H 0.96701 * 117.00192 * 179.97438 * 27 25 23 46 46 H 1.08997 * 109.59262 * 173.14281 * 28 17 16 47 47 H 1.09004 * 109.58420 * 293.56456 * 28 17 16 48 48 H 1.08994 * 109.56628 * 185.55489 * 29 28 17 49 49 H 1.09002 * 109.35385 * 65.50290 * 29 28 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5640 -1.2509 6 6 4.0978 -0.7974 -1.3345 7 1 3.8137 -1.3102 -2.2415 8 6 4.5858 -1.5185 -0.2534 9 7 5.3001 -0.9141 0.6724 10 14 4.2290 -3.3466 -0.1123 11 1 5.3032 -4.1146 -0.7916 12 1 4.1759 -3.7315 1.3210 13 1 2.9240 -3.6472 -0.7542 14 6 4.2883 1.3998 -2.4130 15 6 3.2936 1.1013 -3.5371 16 6 3.6010 2.0016 -4.7379 17 7 5.0096 1.8221 -5.1151 18 6 5.3463 1.5032 -6.3806 19 8 4.4829 1.3621 -7.2206 20 6 6.7957 1.3231 -6.7522 21 1 7.4991 1.9711 -6.2294 22 6 7.2642 -0.0902 -7.1041 23 6 7.1130 0.9619 -8.2046 24 1 6.2734 0.8546 -8.8915 25 6 8.3744 1.5291 -8.8031 26 8 9.0914 2.2399 -8.1393 27 8 8.7013 1.2448 -10.0735 28 6 6.0438 1.9908 -4.0853 29 6 5.7094 1.0962 -2.8930 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.6886 1.8464 0.8900 34 1 1.6887 1.8464 -0.8900 35 1 3.8508 0.5685 0.8427 36 1 3.9784 2.1765 0.0902 37 1 5.6408 -1.4179 1.4280 38 1 4.2163 2.4511 -2.1340 39 1 2.2798 1.2956 -3.1869 40 1 3.3820 0.0563 -3.8339 41 1 3.4247 3.0430 -4.4685 42 1 2.9603 1.7252 -5.5753 43 1 6.5244 -0.8897 -7.0666 44 1 8.2761 -0.3721 -6.8129 45 1 9.5196 1.6320 -10.4134 46 1 7.0144 1.7073 -4.4921 47 1 6.0708 3.0313 -3.7615 48 1 6.4150 1.2867 -2.0845 49 1 5.7757 0.0511 -3.1957 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001599231912.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:07:36 Heat of formation + Delta-G solvation = -116.206659 kcal Electronic energy + Delta-G solvation = -30954.461785 eV Core-core repulsion = 26690.627333 eV Total energy + Delta-G solvation = -4263.834452 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.91665 -39.91946 -37.92538 -37.02549 -36.60900 -35.83319 -34.94120 -32.05661 -30.77771 -30.60082 -28.18764 -26.36982 -25.66603 -25.03581 -24.05772 -22.98984 -22.46733 -21.19120 -20.54725 -19.79834 -18.84388 -18.35344 -17.72349 -16.51301 -16.13613 -16.03967 -15.73558 -15.67852 -15.07509 -14.94465 -14.80649 -14.27407 -14.09217 -14.02072 -13.81806 -13.49545 -13.40019 -13.04172 -12.62165 -12.49860 -12.30399 -11.97580 -11.85441 -11.77093 -11.57041 -11.39673 -11.07053 -10.93561 -10.92198 -10.81083 -10.77148 -10.68939 -10.63160 -10.47744 -10.03579 -9.92757 -9.82849 -9.68181 -9.43744 -8.82209 -8.42707 -8.35849 -6.49732 -5.70003 -3.26299 1.76086 2.41042 2.59680 3.18383 3.42954 3.50798 3.57239 3.58897 4.28100 4.42405 4.53296 4.56825 4.68727 4.88863 5.01679 5.20422 5.22405 5.34138 5.43208 5.51355 5.54569 5.65986 5.69237 5.73620 5.73828 5.78562 5.79897 5.98989 6.02197 6.07885 6.12812 6.15300 6.17322 6.28215 6.40235 6.45592 6.62036 6.67844 6.70679 6.83067 7.10404 7.18683 7.54437 7.60611 7.65446 7.91812 8.07782 8.23359 8.61967 9.26098 9.90084 10.45476 11.31565 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.014862 B = 0.002903 C = 0.002678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1883.598782 B = 9641.384164 C =10454.271951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.354 6.354 3 C 0.047 3.953 4 C 0.144 3.856 5 N -0.571 5.571 6 C -0.233 4.233 7 H 0.054 0.946 8 C 0.020 3.980 9 N -0.893 5.893 10 Si 0.893 3.107 11 H -0.291 1.291 12 H -0.292 1.292 13 H -0.279 1.279 14 C 0.177 3.823 15 C -0.140 4.140 16 C 0.114 3.886 17 N -0.595 5.595 18 C 0.545 3.455 19 O -0.550 6.550 20 C -0.153 4.153 21 H 0.140 0.860 22 C -0.112 4.112 23 C -0.143 4.143 24 H 0.149 0.851 25 C 0.513 3.487 26 O -0.514 6.514 27 O -0.510 6.510 28 C 0.104 3.896 29 C -0.132 4.132 30 H 0.028 0.972 31 H 0.074 0.926 32 H 0.026 0.974 33 H 0.023 0.977 34 H 0.026 0.974 35 H 0.103 0.897 36 H 0.039 0.961 37 H 0.252 0.748 38 H 0.046 0.954 39 H 0.065 0.935 40 H 0.068 0.932 41 H 0.062 0.938 42 H 0.084 0.916 43 H 0.120 0.880 44 H 0.114 0.886 45 H 0.412 0.588 46 H 0.079 0.921 47 H 0.065 0.935 48 H 0.075 0.925 49 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.154 6.655 -12.160 14.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.271 6.271 3 C -0.033 4.033 4 C 0.017 3.983 5 N -0.290 5.290 6 C -0.363 4.363 7 H 0.071 0.929 8 C -0.179 4.179 9 N -0.536 5.536 10 Si 0.723 3.277 11 H -0.218 1.218 12 H -0.218 1.218 13 H -0.204 1.204 14 C 0.069 3.931 15 C -0.180 4.180 16 C -0.009 4.009 17 N -0.326 5.326 18 C 0.332 3.668 19 O -0.429 6.429 20 C -0.174 4.174 21 H 0.158 0.842 22 C -0.149 4.149 23 C -0.162 4.162 24 H 0.167 0.833 25 C 0.356 3.644 26 O -0.402 6.402 27 O -0.322 6.322 28 C -0.019 4.019 29 C -0.172 4.172 30 H 0.047 0.953 31 H 0.092 0.908 32 H 0.044 0.956 33 H 0.041 0.959 34 H 0.045 0.955 35 H 0.120 0.880 36 H 0.057 0.943 37 H 0.061 0.939 38 H 0.064 0.936 39 H 0.084 0.916 40 H 0.086 0.914 41 H 0.080 0.920 42 H 0.103 0.897 43 H 0.138 0.862 44 H 0.132 0.868 45 H 0.271 0.729 46 H 0.098 0.902 47 H 0.083 0.917 48 H 0.094 0.906 49 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 1.721 6.379 -12.067 13.757 hybrid contribution 0.060 -0.374 0.043 0.381 sum 1.781 6.005 -12.024 13.558 Atomic orbital electron populations 1.22627 0.84337 1.01439 0.98350 1.88223 1.16449 1.27655 1.94799 1.23456 0.99008 0.84102 0.96697 1.21035 0.87369 0.96541 0.93324 1.43709 1.75216 1.02695 1.07382 1.18674 1.35638 0.81543 1.00449 0.92859 1.25005 0.96484 0.97348 0.99074 1.69947 1.34721 1.35579 1.13355 0.86466 0.78232 0.86153 0.76807 1.21844 1.21798 1.20416 1.20331 0.91153 0.93467 0.88138 1.22407 1.00543 1.00036 0.95044 1.21712 0.80910 0.99528 0.98702 1.48024 1.08377 1.67916 1.08330 1.19339 0.88755 0.76449 0.82223 1.90672 1.50863 1.52185 1.49150 1.22356 0.96769 1.02101 0.96202 0.84191 1.23108 1.04250 0.91263 0.96313 1.21626 0.96223 1.05877 0.92507 0.83333 1.22248 0.85764 0.77118 0.79301 1.90734 1.52003 1.35708 1.61757 1.84508 1.46972 1.71178 1.29497 1.21918 0.90334 1.00431 0.89230 1.22180 0.99552 1.00032 0.95410 0.95340 0.90788 0.95589 0.95936 0.95542 0.87975 0.94301 0.93856 0.93585 0.91625 0.91365 0.92001 0.89733 0.86219 0.86771 0.72924 0.90236 0.91716 0.90602 0.90843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 11.01 101.05 1.11 1.60 16 2 O -0.35 -7.59 10.18 -35.23 -0.36 -7.95 16 3 C 0.05 0.91 6.28 37.16 0.23 1.14 16 4 C 0.14 3.15 5.70 -4.04 -0.02 3.13 16 5 N -0.57 -12.85 2.34 -165.62 -0.39 -13.24 16 6 C -0.23 -5.96 7.60 -15.06 -0.11 -6.07 16 7 H 0.05 1.42 7.09 -52.48 -0.37 1.04 16 8 C 0.02 0.54 4.97 -17.43 -0.09 0.45 16 9 N -0.89 -24.62 11.47 55.49 0.64 -23.98 16 10 Si 0.89 21.77 29.60 -169.99 -5.03 16.74 16 11 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 12 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 13 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 14 C 0.18 3.27 2.60 -67.89 -0.18 3.09 16 15 C -0.14 -2.41 5.38 -26.61 -0.14 -2.55 16 16 C 0.11 1.69 6.43 -3.71 -0.02 1.67 16 17 N -0.59 -8.65 2.98 -173.03 -0.52 -9.16 16 18 C 0.54 8.06 7.48 -10.98 -0.08 7.98 16 19 O -0.55 -9.61 15.67 5.55 0.09 -9.52 16 20 C -0.15 -1.82 4.47 -91.77 -0.41 -2.23 16 21 H 0.14 1.59 6.36 -51.93 -0.33 1.26 16 22 C -0.11 -1.12 9.94 -26.73 -0.27 -1.39 16 23 C -0.14 -1.54 5.81 -91.78 -0.53 -2.07 16 24 H 0.15 1.63 7.67 -51.92 -0.40 1.24 16 25 C 0.51 5.43 8.11 36.01 0.29 5.72 16 26 O -0.51 -6.75 17.02 -18.75 -0.32 -7.07 16 27 O -0.51 -4.04 13.42 -39.23 -0.53 -4.56 16 28 C 0.10 1.40 6.27 -3.93 -0.02 1.37 16 29 C -0.13 -2.28 5.21 -26.83 -0.14 -2.42 16 30 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.10 2.62 5.54 -51.93 -0.29 2.33 16 36 H 0.04 0.78 7.88 -51.93 -0.41 0.37 16 37 H 0.25 6.83 8.31 -40.82 -0.34 6.49 16 38 H 0.05 0.80 7.77 -51.93 -0.40 0.40 16 39 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 40 H 0.07 1.34 7.24 -51.93 -0.38 0.97 16 41 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.08 1.31 7.01 -51.93 -0.36 0.95 16 43 H 0.12 1.20 8.14 -51.93 -0.42 0.78 16 44 H 0.11 0.98 8.14 -51.93 -0.42 0.56 16 45 H 0.41 1.39 9.10 45.56 0.41 1.80 16 46 H 0.08 0.94 5.68 -51.93 -0.30 0.64 16 47 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 48 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 49 H 0.07 1.45 7.62 -51.93 -0.40 1.05 16 LS Contribution 398.09 15.07 6.00 6.00 Total: -1.00 -32.40 398.09 -7.80 -40.21 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: -7.00 Total: 3.14 kcal Atomic # 6 Polarization: 9.79 SS G_CDS: -0.39 Total: 9.41 kcal Atomic # 7 Polarization: -46.12 SS G_CDS: -0.27 Total: -46.38 kcal Atomic # 8 Polarization: -27.99 SS G_CDS: -1.12 Total: -29.10 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.03 Total: 16.74 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -32.40 -7.80 -40.21 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599231912.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.002 kcal (2) G-P(sol) polarization free energy of solvation -32.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds